Mercurial > repos > ning > ebseq
annotate GetAllPatterns.R @ 23:675d21e7fabc draft
Uploaded
| author | ning |
|---|---|
| date | Wed, 20 Mar 2013 00:08:20 -0400 |
| parents | 9cf7a632a73e |
| children |
| rev | line source |
|---|---|
| 5 | 1 sink(file="/tmp/none") |
| 2 sink("/dev/null") | |
| 3 options(warn=-1) | |
| 4 options(echo=F) | |
| 5 | |
| 6 invisible("EBSeq") | |
| 7 suppressMessages(library("EBSeq")) | |
| 8 | |
| 9 args <- commandArgs() | |
| 10 inputfile <- args[6] | |
| 11 outputfile <- args[7] | |
| 12 #PairwisePlots <-args[6] | |
| 13 | |
| 14 print(args) | |
| 15 | |
| 16 Conds=strsplit(inputfile,split=",")[[1]] | |
| 17 | |
| 18 | |
| 19 Out=GetPatterns(Conds) | |
| 20 | |
| 21 | |
| 22 write.table(Out,file=outputfile,quote=F,col.names=T,row.names=T,sep = "\t") | |
| 23 |