annotate GetIg.R @ 23:675d21e7fabc draft

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author ning
date Wed, 20 Mar 2013 00:08:20 -0400
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1 sink(file="/tmp/none")
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2 sink("/dev/null")
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3 options(warn=-1)
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4 options(echo=F)
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6 invisible("EBSeq")
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7 suppressMessages(library("EBSeq"))
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9 args <- commandArgs(trailingOnly = T)
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10 inputfile <- args[1]
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11 outputfile <- args[2]
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13 print(args)
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14
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15 a1=read.csv(inputfile,stringsAsFactors=F,header=F, sep="\t")
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16 Ng=GetNg(a1[[1]],a1[[2]])
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17 Ig=Ng$IsoformNgTrun
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22 write.table(Ig,file=outputfile,quote=F,col.names=F,row.names=F,sep = "\t")
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