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changeset 5:9cf7a632a73e draft

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Uploaded
author ning
date Fri, 15 Mar 2013 18:21:00 -0400
parents d5394f539b07
children cd0637465b05
files GetAllPatterns.R
diffstat 1 files changed, 23 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/GetAllPatterns.R	Fri Mar 15 18:21:00 2013 -0400
@@ -0,0 +1,23 @@
+sink(file="/tmp/none")
+sink("/dev/null")
+options(warn=-1)
+options(echo=F) 
+
+invisible("EBSeq")
+suppressMessages(library("EBSeq"))
+
+args <- commandArgs()
+inputfile <- args[6]
+outputfile <- args[7]
+#PairwisePlots <-args[6]
+
+print(args)
+
+Conds=strsplit(inputfile,split=",")[[1]]
+
+
+Out=GetPatterns(Conds)
+
+
+write.table(Out,file=outputfile,quote=F,col.names=T,row.names=T,sep = "\t")
+