Mercurial > repos > nml > assemblystats
annotate test-data/Assembly_statistics_-_SRR1002850_SMALL.fasta.tabular @ 1:7556309ffbaf draft default tip
"planemo upload for repository https://github.com/phac-nml/galaxy_tools commit fb4c29f720748f46ff501140f2cd306bab6614f9"
author | nml |
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date | Fri, 29 May 2020 13:51:50 -0400 |
parents | ad2b274663f8 |
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rev | line source |
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0
ad2b274663f8
planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
parents:
diff
changeset
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1 Statistics for contig lengths: |
ad2b274663f8
planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
parents:
diff
changeset
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2 Min contig length: 56 |
ad2b274663f8
planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
parents:
diff
changeset
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3 Max contig length: 726,282 |
ad2b274663f8
planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
parents:
diff
changeset
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4 Mean contig length: 12811.87 |
ad2b274663f8
planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
parents:
diff
changeset
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5 Standard deviation of contig length: 61076.24 |
ad2b274663f8
planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
parents:
diff
changeset
|
6 Median contig length: 331 |
ad2b274663f8
planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
parents:
diff
changeset
|
7 N50 contig length: 203,546 |
ad2b274663f8
planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
parents:
diff
changeset
|
8 |
ad2b274663f8
planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
parents:
diff
changeset
|
9 Statistics for numbers of contigs: |
ad2b274663f8
planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
parents:
diff
changeset
|
10 Number of contigs: 383 |
ad2b274663f8
planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
parents:
diff
changeset
|
11 Number of contigs >=1kb: 109 |
ad2b274663f8
planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
parents:
diff
changeset
|
12 Number of contigs in N50: 6 |
ad2b274663f8
planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
parents:
diff
changeset
|
13 |
ad2b274663f8
planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
parents:
diff
changeset
|
14 Statistics for bases in the contigs: |
ad2b274663f8
planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
parents:
diff
changeset
|
15 Number of bases in all contigs: 4,906,947 |
ad2b274663f8
planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
parents:
diff
changeset
|
16 Number of bases in contigs >=1kb: 4,843,765 |
ad2b274663f8
planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
parents:
diff
changeset
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17 GC Content of contigs: 52.18 % |
ad2b274663f8
planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
parents:
diff
changeset
|
18 |
ad2b274663f8
planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
parents:
diff
changeset
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19 Simple Dinucleotide repeats: |
ad2b274663f8
planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
parents:
diff
changeset
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20 Number of contigs with over 70% dinucleotode repeats: 0.00 % (0 contigs) |
ad2b274663f8
planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
parents:
diff
changeset
|
21 AT: 0.00 % (0 contigs) |
ad2b274663f8
planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
parents:
diff
changeset
|
22 CG: 0.00 % (0 contigs) |
ad2b274663f8
planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
parents:
diff
changeset
|
23 AC: 0.00 % (0 contigs) |
ad2b274663f8
planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
parents:
diff
changeset
|
24 TG: 0.00 % (0 contigs) |
ad2b274663f8
planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
parents:
diff
changeset
|
25 AG: 0.00 % (0 contigs) |
ad2b274663f8
planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
parents:
diff
changeset
|
26 TC: 0.00 % (0 contigs) |
ad2b274663f8
planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
parents:
diff
changeset
|
27 |
ad2b274663f8
planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
parents:
diff
changeset
|
28 Simple mononucleotide repeats: |
ad2b274663f8
planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
parents:
diff
changeset
|
29 Number of contigs with over 50% mononucleotode repeats: 0.00 % (0 contigs) |
ad2b274663f8
planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
parents:
diff
changeset
|
30 AA: 0.00 % (0 contigs) |
ad2b274663f8
planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
parents:
diff
changeset
|
31 TT: 0.00 % (0 contigs) |
ad2b274663f8
planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
parents:
diff
changeset
|
32 CC: 0.00 % (0 contigs) |
ad2b274663f8
planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
parents:
diff
changeset
|
33 GG: 0.00 % (0 contigs) |
ad2b274663f8
planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
nml
parents:
diff
changeset
|
34 |