view test-data/Assembly_statistics_-_SRR1002850_SMALL.fasta.tabular @ 1:7556309ffbaf draft default tip

"planemo upload for repository https://github.com/phac-nml/galaxy_tools commit fb4c29f720748f46ff501140f2cd306bab6614f9"
author nml
date Fri, 29 May 2020 13:51:50 -0400
parents ad2b274663f8
children
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Statistics for contig lengths:
	Min contig length:	56
	Max contig length:	726,282
	Mean contig length:	12811.87
	Standard deviation of contig length:	61076.24
	Median contig length:	331
	N50 contig length:	203,546

Statistics for numbers of contigs:
	Number of contigs:	383
	Number of contigs >=1kb:	109
	Number of contigs in N50:	6

Statistics for bases in the contigs:
	Number of bases in all contigs:	4,906,947
	Number of bases in contigs >=1kb:	4,843,765
	GC Content of contigs:	52.18 %

Simple Dinucleotide repeats:
	Number of contigs with over 70% dinucleotode repeats:	0.00 % (0 contigs)
	AT:	0.00 % (0 contigs)
	CG:	0.00 % (0 contigs)
	AC:	0.00 % (0 contigs)
	TG:	0.00 % (0 contigs)
	AG:	0.00 % (0 contigs)
	TC:	0.00 % (0 contigs)

Simple mononucleotide repeats:
	Number of contigs with over 50% mononucleotode repeats:	0.00 % (0 contigs)
	AA:	0.00 % (0 contigs)
	TT:	0.00 % (0 contigs)
	CC:	0.00 % (0 contigs)
	GG:	0.00 % (0 contigs)