Mercurial > repos > nml > assemblystats
view test-data/Assembly_statistics_-_SRR1002850_SMALL.fasta.tabular @ 1:7556309ffbaf draft default tip
"planemo upload for repository https://github.com/phac-nml/galaxy_tools commit fb4c29f720748f46ff501140f2cd306bab6614f9"
author | nml |
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date | Fri, 29 May 2020 13:51:50 -0400 |
parents | ad2b274663f8 |
children |
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Statistics for contig lengths: Min contig length: 56 Max contig length: 726,282 Mean contig length: 12811.87 Standard deviation of contig length: 61076.24 Median contig length: 331 N50 contig length: 203,546 Statistics for numbers of contigs: Number of contigs: 383 Number of contigs >=1kb: 109 Number of contigs in N50: 6 Statistics for bases in the contigs: Number of bases in all contigs: 4,906,947 Number of bases in contigs >=1kb: 4,843,765 GC Content of contigs: 52.18 % Simple Dinucleotide repeats: Number of contigs with over 70% dinucleotode repeats: 0.00 % (0 contigs) AT: 0.00 % (0 contigs) CG: 0.00 % (0 contigs) AC: 0.00 % (0 contigs) TG: 0.00 % (0 contigs) AG: 0.00 % (0 contigs) TC: 0.00 % (0 contigs) Simple mononucleotide repeats: Number of contigs with over 50% mononucleotode repeats: 0.00 % (0 contigs) AA: 0.00 % (0 contigs) TT: 0.00 % (0 contigs) CC: 0.00 % (0 contigs) GG: 0.00 % (0 contigs)