Mercurial > repos > nml > assemblystats
diff test-data/Assembly_statistics_-_SRR1002850_SMALL.fasta.tabular @ 0:ad2b274663f8 draft
planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
| author | nml |
|---|---|
| date | Tue, 07 Nov 2017 12:28:31 -0500 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/Assembly_statistics_-_SRR1002850_SMALL.fasta.tabular Tue Nov 07 12:28:31 2017 -0500 @@ -0,0 +1,34 @@ +Statistics for contig lengths: + Min contig length: 56 + Max contig length: 726,282 + Mean contig length: 12811.87 + Standard deviation of contig length: 61076.24 + Median contig length: 331 + N50 contig length: 203,546 + +Statistics for numbers of contigs: + Number of contigs: 383 + Number of contigs >=1kb: 109 + Number of contigs in N50: 6 + +Statistics for bases in the contigs: + Number of bases in all contigs: 4,906,947 + Number of bases in contigs >=1kb: 4,843,765 + GC Content of contigs: 52.18 % + +Simple Dinucleotide repeats: + Number of contigs with over 70% dinucleotode repeats: 0.00 % (0 contigs) + AT: 0.00 % (0 contigs) + CG: 0.00 % (0 contigs) + AC: 0.00 % (0 contigs) + TG: 0.00 % (0 contigs) + AG: 0.00 % (0 contigs) + TC: 0.00 % (0 contigs) + +Simple mononucleotide repeats: + Number of contigs with over 50% mononucleotode repeats: 0.00 % (0 contigs) + AA: 0.00 % (0 contigs) + TT: 0.00 % (0 contigs) + CC: 0.00 % (0 contigs) + GG: 0.00 % (0 contigs) +