Mercurial > repos > nml > biohansel_bionumeric_converter
comparison bionumeric_convert.xml @ 0:b000a3130db8 draft
planemo upload commit e5e384ce6c90f595e8d397a7c45ca9c17d4a3e2a
| author | nml |
|---|---|
| date | Mon, 18 Mar 2019 13:15:57 -0400 |
| parents | |
| children | 07dfb8fd47f4 |
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| -1:000000000000 | 0:b000a3130db8 |
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| 1 <tool id="bionumeric_convert" name="biohansel2bionumerics" version="0.1.0"> | |
| 2 <description>compliant results</description> | |
| 3 <requirements> | |
| 4 <requirement type="package" version="0.24.1">pandas</requirement> | |
| 5 </requirements> | |
| 6 <command detect_errors="exit_code"><![CDATA[ | |
| 7 $__tool_directory__/bionumeric_converter.py -f '$Input' -o '$output' | |
| 8 ]]></command> | |
| 9 <inputs> | |
| 10 <param type="data" name="Input" format="tabular"/> | |
| 11 </inputs> | |
| 12 <outputs> | |
| 13 <data name="output" format="csv" from_work_dir="output" label="Output.csv"/> | |
| 14 </outputs> | |
| 15 <tests> | |
| 16 <test> | |
| 17 <param name="Input" value="results.tab"/> | |
| 18 <output name="output" value="Output.csv"/> | |
| 19 </test> | |
| 20 </tests> | |
| 21 <help><![CDATA[ | |
| 22 **What it does** | |
| 23 | |
| 24 This tool is a supplementary script that takes *only* BioHansel output data and converts it into a format compatible with bionumerics. | |
| 25 | |
| 26 **How to run it** | |
| 27 | |
| 28 1. Input any of your BioHansel output files (tech_results.tab, match_results.tab, and results.tab) | |
| 29 2. Click Execute | |
| 30 | |
| 31 **Specific modifications done on the data** | |
| 32 | |
| 33 1. Converts all commas in the output to "/" | |
| 34 2. Shortens BioHansel qc_messages if they are over 150 characters | |
| 35 3. Converts the .tab file to a .csv file | |
| 36 | |
| 37 ]]></help> | |
| 38 <citations> | |
| 39 </citations> | |
| 40 </tool> |