Mercurial > repos > nml > biohansel_bionumeric_converter
diff bionumeric_convert.xml @ 0:b000a3130db8 draft
planemo upload commit e5e384ce6c90f595e8d397a7c45ca9c17d4a3e2a
author | nml |
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date | Mon, 18 Mar 2019 13:15:57 -0400 |
parents | |
children | 07dfb8fd47f4 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/bionumeric_convert.xml Mon Mar 18 13:15:57 2019 -0400 @@ -0,0 +1,40 @@ +<tool id="bionumeric_convert" name="biohansel2bionumerics" version="0.1.0"> + <description>compliant results</description> + <requirements> + <requirement type="package" version="0.24.1">pandas</requirement> + </requirements> + <command detect_errors="exit_code"><![CDATA[ + $__tool_directory__/bionumeric_converter.py -f '$Input' -o '$output' + ]]></command> + <inputs> + <param type="data" name="Input" format="tabular"/> + </inputs> + <outputs> + <data name="output" format="csv" from_work_dir="output" label="Output.csv"/> + </outputs> + <tests> + <test> + <param name="Input" value="results.tab"/> + <output name="output" value="Output.csv"/> + </test> + </tests> + <help><![CDATA[ + **What it does** + + This tool is a supplementary script that takes *only* BioHansel output data and converts it into a format compatible with bionumerics. + + **How to run it** + + 1. Input any of your BioHansel output files (tech_results.tab, match_results.tab, and results.tab) + 2. Click Execute + + **Specific modifications done on the data** + + 1. Converts all commas in the output to "/" + 2. Shortens BioHansel qc_messages if they are over 150 characters + 3. Converts the .tab file to a .csv file + + ]]></help> + <citations> + </citations> +</tool> \ No newline at end of file