Mercurial > repos > nml > combine_assemblystats
comparison test-data/second.txt @ 0:1855203c2e6c draft default tip
planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 132092ff7fe1c4810d1221054419389180b81657
author | nml |
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date | Wed, 08 Nov 2017 16:38:50 -0500 |
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comparison
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-1:000000000000 | 0:1855203c2e6c |
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1 Statistics for contig lengths: | |
2 Min contig length: 1,134 | |
3 Max contig length: 101,601 | |
4 Mean contig length: 24967.61 | |
5 Standard deviation of contig length: 23081.09 | |
6 Median contig length: 16,588 | |
7 N50 contig length: 44,563 | |
8 | |
9 Statistics for numbers of contigs: | |
10 Number of contigs: 185 | |
11 Number of contigs >=1kb: 185 | |
12 Number of contigs in N50: 37 | |
13 | |
14 Statistics for bases in the contigs: | |
15 Number of bases in all contigs: 4,619,008 | |
16 Number of bases in contigs >=1kb: 4,619,008 | |
17 GC Content of contigs: 47.50 % | |
18 | |
19 Simple Dinucleotide repeats: | |
20 Number of contigs with over 70% dinucleotode repeats: 0.00 % (0 contigs) | |
21 AT: 0.00 % (0 contigs) | |
22 CG: 0.00 % (0 contigs) | |
23 AC: 0.00 % (0 contigs) | |
24 TG: 0.00 % (0 contigs) | |
25 AG: 0.00 % (0 contigs) | |
26 TC: 0.00 % (0 contigs) | |
27 | |
28 Simple mononucleotide repeats: | |
29 Number of contigs with over 50% mononucleotode repeats: 0.00 % (0 contigs) | |
30 AA: 0.00 % (0 contigs) | |
31 TT: 0.00 % (0 contigs) | |
32 CC: 0.00 % (0 contigs) | |
33 GG: 0.00 % (0 contigs) | |
34 |