Mercurial > repos > nml > combine_assemblystats
diff combine_stats.xml @ 0:1855203c2e6c draft default tip
planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 132092ff7fe1c4810d1221054419389180b81657
author | nml |
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date | Wed, 08 Nov 2017 16:38:50 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/combine_stats.xml Wed Nov 08 16:38:50 2017 -0500 @@ -0,0 +1,45 @@ +<tool id="combine_stats" name="Combine AssemblyStats" version="1.0"> + <description>Combines List Collection Assembly Statistics </description> + <requirements> + <requirement type="package" version="2.49">perl-getopt-long</requirement> + </requirements> + <command detect_errors="exit_code"><![CDATA[ + perl '$__tool_directory__/combine_stats.pl' + + --output '$result' + #for $f in $texts.keys# --stats '$f=$texts[$f]' #end for# + ]]></command> + <inputs> + <param name="texts" type="data_collection" label="List Collection of Assembly Statistics" help="" optional="false" collection_type="list" /> + </inputs> + <outputs> + <data name="result" format="tabular" ></data> + </outputs> + <tests> + <test> + <param name="texts"> + <collection type="list"> + <element name="first" value="first.txt" /> + <element name="second" value="second.txt" /> + </collection> + </param> + <output name="result" file="results.tabular"/> + </test> + </tests> + <help><![CDATA[ + + **What it does** + + Tool will take one or more https://toolshed.g2.bx.psu.edu/view/nml/assemblystats/ results and combine into a single tabular line file where each result is represented by a single line. + + ]]> + </help> + <citations> + <citation type="bibtex">@ARTICLE{a1, + title = {Combine AssemblyStats}, + author = {Mariam Iskander, Philip Mabon}, + url = {https://github.com/phac-nml/galaxy_tools/} + } + }</citation> + </citations> +</tool>