Mercurial > repos > nml > combine_assemblystats
view combine_stats.xml @ 0:1855203c2e6c draft default tip
planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 132092ff7fe1c4810d1221054419389180b81657
author | nml |
---|---|
date | Wed, 08 Nov 2017 16:38:50 -0500 |
parents | |
children |
line wrap: on
line source
<tool id="combine_stats" name="Combine AssemblyStats" version="1.0"> <description>Combines List Collection Assembly Statistics </description> <requirements> <requirement type="package" version="2.49">perl-getopt-long</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ perl '$__tool_directory__/combine_stats.pl' --output '$result' #for $f in $texts.keys# --stats '$f=$texts[$f]' #end for# ]]></command> <inputs> <param name="texts" type="data_collection" label="List Collection of Assembly Statistics" help="" optional="false" collection_type="list" /> </inputs> <outputs> <data name="result" format="tabular" ></data> </outputs> <tests> <test> <param name="texts"> <collection type="list"> <element name="first" value="first.txt" /> <element name="second" value="second.txt" /> </collection> </param> <output name="result" file="results.tabular"/> </test> </tests> <help><![CDATA[ **What it does** Tool will take one or more https://toolshed.g2.bx.psu.edu/view/nml/assemblystats/ results and combine into a single tabular line file where each result is represented by a single line. ]]> </help> <citations> <citation type="bibtex">@ARTICLE{a1, title = {Combine AssemblyStats}, author = {Mariam Iskander, Philip Mabon}, url = {https://github.com/phac-nml/galaxy_tools/} } }</citation> </citations> </tool>