Mercurial > repos > nml > gnali
annotate test-data/results/Nonessential_Gene_Variants.vcf @ 3:02d368ec14cf draft
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
| author | nml |
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| date | Wed, 13 Jan 2021 18:35:15 +0000 |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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1 ##fileformat=VCFv4.2 |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
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2 ##hailversion=0.2.7-c860755b5da3 |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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3 ##FILTER=<ID=AC0,Description="Allele count is zero after filtering out low-confidence genotypes (GQ < 20; DP < 10; and AB < 0.2 for het calls)"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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4 ##FILTER=<ID=InbreedingCoeff,Description="InbreedingCoeff < -0.3"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
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5 ##FILTER=<ID=PASS,Description="Passed all variant filters"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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6 ##FILTER=<ID=RF,Description="Failed random forest filtering thresholds of 0.2634762834546574, 0.22213813189901457 (probabilities of being a true positive variant) for SNPs, indels"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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7 ##INFO=<ID=AC,Number=A,Type=Integer,Description="Alternate allele count for samples"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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8 ##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in samples"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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9 ##INFO=<ID=AF,Number=A,Type=Float,Description="Alternate allele frequency in samples"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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10 ##INFO=<ID=rf_tp_probability,Number=1,Type=Float,Description="Random forest prediction probability for a site being a true variant"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
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11 ##INFO=<ID=FS,Number=1,Type=Float,Description="Phred-scaled p-value of Fisher's exact test for strand bias"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
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12 ##INFO=<ID=InbreedingCoeff,Number=1,Type=Float,Description="Inbreeding coefficient as estimated from the genotype likelihoods per-sample when compared against the Hardy-Weinberg expectation"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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13 ##INFO=<ID=MQ,Number=1,Type=Float,Description="Root mean square of the mapping quality of reads across all samples"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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14 ##INFO=<ID=MQRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of alternate vs. reference read mapping qualities"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
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15 ##INFO=<ID=QD,Number=1,Type=Float,Description="Variant call confidence normalized by depth of sample reads supporting a variant"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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16 ##INFO=<ID=ReadPosRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of alternate vs. reference read position bias"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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17 ##INFO=<ID=SOR,Number=1,Type=Float,Description="Strand bias estimated by the symmetric odds ratio test"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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18 ##INFO=<ID=VQSR_POSITIVE_TRAIN_SITE,Number=0,Type=Flag,Description="Variant was used to build the positive training set of high-quality variants for VQSR"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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19 ##INFO=<ID=VQSR_NEGATIVE_TRAIN_SITE,Number=0,Type=Flag,Description="Variant was used to build the negative training set of low-quality variants for VQSR"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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20 ##INFO=<ID=BaseQRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of alternate vs. reference base qualities"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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21 ##INFO=<ID=ClippingRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of alternate vs. reference number of hard clipped bases"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
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22 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Depth of informative coverage for each sample; reads with MQ=255 or with bad mates are filtered"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
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23 ##INFO=<ID=VQSLOD,Number=1,Type=Float,Description="Log-odds ratio of being a true variant versus being a false positive under the trained VQSR Gaussian mixture model"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
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24 ##INFO=<ID=VQSR_culprit,Number=1,Type=String,Description="Worst-performing annotation in the VQSR Gaussian mixture model"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
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25 ##INFO=<ID=segdup,Number=0,Type=Flag,Description="Variant falls within a segmental duplication region"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
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26 ##INFO=<ID=lcr,Number=0,Type=Flag,Description="Variant falls within a low complexity region"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
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27 ##INFO=<ID=decoy,Number=0,Type=Flag,Description="Variant falls within a reference decoy region"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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28 ##INFO=<ID=nonpar,Number=0,Type=Flag,Description="Variant (on sex chromosome) falls outside a pseudoautosomal region"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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29 ##INFO=<ID=rf_positive_label,Number=0,Type=Flag,Description="Variant was labelled as a positive example for training of random forest model"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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30 ##INFO=<ID=rf_negative_label,Number=0,Type=Flag,Description="Variant was labelled as a negative example for training of random forest model"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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31 ##INFO=<ID=rf_label,Number=1,Type=String,Description="Random forest training label"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
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32 ##INFO=<ID=rf_train,Number=0,Type=Flag,Description="Variant was used in training random forest model"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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33 ##INFO=<ID=transmitted_singleton,Number=0,Type=Flag,Description="Variant was a callset-wide doubleton that was transmitted within a family (i.e., a singleton amongst unrelated sampes in cohort)"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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34 ##INFO=<ID=variant_type,Number=1,Type=String,Description="Variant type (snv, indel, multi-snv, multi-indel, or mixed)"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
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35 ##INFO=<ID=allele_type,Number=A,Type=String,Description="Allele type (snv, ins, del, or mixed)"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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36 ##INFO=<ID=n_alt_alleles,Number=A,Type=Integer,Description="Total number of alternate alleles observed at variant locus"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
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37 ##INFO=<ID=was_mixed,Number=0,Type=Flag,Description="Variant type was mixed"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
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38 ##INFO=<ID=has_star,Number=0,Type=Flag,Description="Variant locus coincides with a spanning deletion (represented by a star) observed elsewhere in the callset"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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39 ##INFO=<ID=pab_max,Number=A,Type=Float,Description="Maximum p-value over callset for binomial test of observed allele balance for a heterozygous genotype, given expectation of AB=0.5"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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40 ##INFO=<ID=gq_hist_alt_bin_freq,Number=A,Type=String,Description="Histogram for GQ in heterozygous individuals; bin edges are: 0|5|10|15|20|25|30|35|40|45|50|55|60|65|70|75|80|85|90|95|100"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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41 ##INFO=<ID=gq_hist_all_bin_freq,Number=A,Type=String,Description="Histogram for GQ; bin edges are: 0|5|10|15|20|25|30|35|40|45|50|55|60|65|70|75|80|85|90|95|100"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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42 ##INFO=<ID=dp_hist_alt_bin_freq,Number=A,Type=String,Description="Histogram for DP in heterozygous individuals; bin edges are: 0|5|10|15|20|25|30|35|40|45|50|55|60|65|70|75|80|85|90|95|100"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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43 ##INFO=<ID=dp_hist_alt_n_larger,Number=A,Type=Integer,Description="Count of DP values falling above highest histogram bin edge"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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44 ##INFO=<ID=dp_hist_all_bin_freq,Number=A,Type=String,Description="Histogram for DP; bin edges are: 0|5|10|15|20|25|30|35|40|45|50|55|60|65|70|75|80|85|90|95|100"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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45 ##INFO=<ID=dp_hist_all_n_larger,Number=A,Type=Integer,Description="Count of DP values falling above highest histogram bin edge"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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46 ##INFO=<ID=ab_hist_alt_bin_freq,Number=A,Type=String,Description="Histogram for AB in heterozygous individuals; bin edges are: 0.00|0.05|0.10|0.15|0.20|0.25|0.30|0.35|0.40|0.45|0.50|0.55|0.60|0.65|0.70|0.75|0.80|0.85|0.90|0.95|1.00"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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47 ##INFO=<ID=AC_nfe_seu,Number=A,Type=Integer,Description="Alternate allele count for samples of Southern European ancestry"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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48 ##INFO=<ID=AN_nfe_seu,Number=1,Type=Integer,Description="Total number of alleles in samples of Southern European ancestry"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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49 ##INFO=<ID=AF_nfe_seu,Number=A,Type=Float,Description="Alternate allele frequency in samples of Southern European ancestry"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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50 ##INFO=<ID=nhomalt_nfe_seu,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Southern European ancestry"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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51 ##INFO=<ID=controls_AC_afr_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of African-American/African ancestry in the controls subset"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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52 ##INFO=<ID=controls_AN_afr_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of African-American/African ancestry in the controls subset"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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53 ##INFO=<ID=controls_AF_afr_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of African-American/African ancestry in the controls subset"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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54 ##INFO=<ID=controls_nhomalt_afr_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of African-American/African ancestry in the controls subset"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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55 ##INFO=<ID=non_topmed_AC_amr,Number=A,Type=Integer,Description="Alternate allele count for samples of Latino ancestry in the non_topmed subset"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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56 ##INFO=<ID=non_topmed_AN_amr,Number=1,Type=Integer,Description="Total number of alleles in samples of Latino ancestry in the non_topmed subset"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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57 ##INFO=<ID=non_topmed_AF_amr,Number=A,Type=Float,Description="Alternate allele frequency in samples of Latino ancestry in the non_topmed subset"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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58 ##INFO=<ID=non_topmed_nhomalt_amr,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Latino ancestry in the non_topmed subset"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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59 ##INFO=<ID=AC_raw,Number=A,Type=Integer,Description="Alternate allele count for samples, before removing low-confidence genotypes"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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60 ##INFO=<ID=AN_raw,Number=1,Type=Integer,Description="Total number of alleles in samples, before removing low-confidence genotypes"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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61 ##INFO=<ID=AF_raw,Number=A,Type=Float,Description="Alternate allele frequency in samples, before removing low-confidence genotypes"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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62 ##INFO=<ID=nhomalt_raw,Number=A,Type=Integer,Description="Count of homozygous individuals in samples, before removing low-confidence genotypes"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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63 ##INFO=<ID=AC_fin_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Finnish ancestry"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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64 ##INFO=<ID=AN_fin_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Finnish ancestry"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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65 ##INFO=<ID=AF_fin_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Finnish ancestry"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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66 ##INFO=<ID=nhomalt_fin_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Finnish ancestry"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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67 ##INFO=<ID=non_neuro_AC_asj_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Ashkenazi Jewish ancestry in the non_neuro subset"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
68 ##INFO=<ID=non_neuro_AN_asj_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Ashkenazi Jewish ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
69 ##INFO=<ID=non_neuro_AF_asj_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Ashkenazi Jewish ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
70 ##INFO=<ID=non_neuro_nhomalt_asj_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Ashkenazi Jewish ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
71 ##INFO=<ID=non_neuro_AC_afr_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of African-American/African ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
72 ##INFO=<ID=non_neuro_AN_afr_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of African-American/African ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
73 ##INFO=<ID=non_neuro_AF_afr_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of African-American/African ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
74 ##INFO=<ID=non_neuro_nhomalt_afr_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of African-American/African ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
75 ##INFO=<ID=AC_afr_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of African-American/African ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
76 ##INFO=<ID=AN_afr_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of African-American/African ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
77 ##INFO=<ID=AF_afr_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of African-American/African ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
78 ##INFO=<ID=nhomalt_afr_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of African-American/African ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
79 ##INFO=<ID=AC_afr,Number=A,Type=Integer,Description="Alternate allele count for samples of African-American/African ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
80 ##INFO=<ID=AN_afr,Number=1,Type=Integer,Description="Total number of alleles in samples of African-American/African ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
81 ##INFO=<ID=AF_afr,Number=A,Type=Float,Description="Alternate allele frequency in samples of African-American/African ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
82 ##INFO=<ID=nhomalt_afr,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of African-American/African ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
83 ##INFO=<ID=non_neuro_AC_afr_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of African-American/African ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
84 ##INFO=<ID=non_neuro_AN_afr_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of African-American/African ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
85 ##INFO=<ID=non_neuro_AF_afr_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of African-American/African ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
86 ##INFO=<ID=non_neuro_nhomalt_afr_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of African-American/African ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
87 ##INFO=<ID=non_topmed_AC_amr_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Latino ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
88 ##INFO=<ID=non_topmed_AN_amr_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Latino ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
89 ##INFO=<ID=non_topmed_AF_amr_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Latino ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
90 ##INFO=<ID=non_topmed_nhomalt_amr_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Latino ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
91 ##INFO=<ID=non_topmed_AC_oth_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Other ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
92 ##INFO=<ID=non_topmed_AN_oth_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Other ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
93 ##INFO=<ID=non_topmed_AF_oth_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Other ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
94 ##INFO=<ID=non_topmed_nhomalt_oth_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Other ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
95 ##INFO=<ID=AC_eas_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of East Asian ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
96 ##INFO=<ID=AN_eas_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of East Asian ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
97 ##INFO=<ID=AF_eas_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of East Asian ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
98 ##INFO=<ID=nhomalt_eas_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of East Asian ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
99 ##INFO=<ID=AC_afr_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of African-American/African ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
100 ##INFO=<ID=AN_afr_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of African-American/African ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
101 ##INFO=<ID=AF_afr_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of African-American/African ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
102 ##INFO=<ID=nhomalt_afr_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of African-American/African ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
103 ##INFO=<ID=non_neuro_AC_female,Number=A,Type=Integer,Description="Alternate allele count for female samples in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
104 ##INFO=<ID=non_neuro_AN_female,Number=1,Type=Integer,Description="Total number of alleles in female samples in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
105 ##INFO=<ID=non_neuro_AF_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
106 ##INFO=<ID=non_neuro_nhomalt_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
107 ##INFO=<ID=controls_AC_afr,Number=A,Type=Integer,Description="Alternate allele count for samples of African-American/African ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
108 ##INFO=<ID=controls_AN_afr,Number=1,Type=Integer,Description="Total number of alleles in samples of African-American/African ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
109 ##INFO=<ID=controls_AF_afr,Number=A,Type=Float,Description="Alternate allele frequency in samples of African-American/African ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
110 ##INFO=<ID=controls_nhomalt_afr,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of African-American/African ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
111 ##INFO=<ID=AC_nfe_onf,Number=A,Type=Integer,Description="Alternate allele count for samples of Other Non-Finnish European ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
112 ##INFO=<ID=AN_nfe_onf,Number=1,Type=Integer,Description="Total number of alleles in samples of Other Non-Finnish European ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
113 ##INFO=<ID=AF_nfe_onf,Number=A,Type=Float,Description="Alternate allele frequency in samples of Other Non-Finnish European ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
114 ##INFO=<ID=nhomalt_nfe_onf,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Other Non-Finnish European ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
115 ##INFO=<ID=controls_AC_fin_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Finnish ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
116 ##INFO=<ID=controls_AN_fin_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Finnish ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
117 ##INFO=<ID=controls_AF_fin_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Finnish ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
118 ##INFO=<ID=controls_nhomalt_fin_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Finnish ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
119 ##INFO=<ID=non_neuro_AC_nfe_nwe,Number=A,Type=Integer,Description="Alternate allele count for samples of North-Western European ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
120 ##INFO=<ID=non_neuro_AN_nfe_nwe,Number=1,Type=Integer,Description="Total number of alleles in samples of North-Western European ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
121 ##INFO=<ID=non_neuro_AF_nfe_nwe,Number=A,Type=Float,Description="Alternate allele frequency in samples of North-Western European ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
122 ##INFO=<ID=non_neuro_nhomalt_nfe_nwe,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of North-Western European ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
123 ##INFO=<ID=AC_fin_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Finnish ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
124 ##INFO=<ID=AN_fin_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Finnish ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
125 ##INFO=<ID=AF_fin_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Finnish ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
126 ##INFO=<ID=nhomalt_fin_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Finnish ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
127 ##INFO=<ID=AC_nfe_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Non-Finnish European ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
128 ##INFO=<ID=AN_nfe_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Non-Finnish European ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
129 ##INFO=<ID=AF_nfe_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Non-Finnish European ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
130 ##INFO=<ID=nhomalt_nfe_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Non-Finnish European ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
131 ##INFO=<ID=AC_amr,Number=A,Type=Integer,Description="Alternate allele count for samples of Latino ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
132 ##INFO=<ID=AN_amr,Number=1,Type=Integer,Description="Total number of alleles in samples of Latino ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
133 ##INFO=<ID=AF_amr,Number=A,Type=Float,Description="Alternate allele frequency in samples of Latino ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
134 ##INFO=<ID=nhomalt_amr,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Latino ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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135 ##INFO=<ID=non_topmed_AC_nfe_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Non-Finnish European ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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136 ##INFO=<ID=non_topmed_AN_nfe_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Non-Finnish European ancestry in the non_topmed subset"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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parents:
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137 ##INFO=<ID=non_topmed_AF_nfe_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Non-Finnish European ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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parents:
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138 ##INFO=<ID=non_topmed_nhomalt_nfe_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Non-Finnish European ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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parents:
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139 ##INFO=<ID=AC_eas,Number=A,Type=Integer,Description="Alternate allele count for samples of East Asian ancestry"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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parents:
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140 ##INFO=<ID=AN_eas,Number=1,Type=Integer,Description="Total number of alleles in samples of East Asian ancestry"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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parents:
diff
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141 ##INFO=<ID=AF_eas,Number=A,Type=Float,Description="Alternate allele frequency in samples of East Asian ancestry"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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parents:
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142 ##INFO=<ID=nhomalt_eas,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of East Asian ancestry"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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parents:
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143 ##INFO=<ID=nhomalt,Number=A,Type=Integer,Description="Count of homozygous individuals in samples"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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144 ##INFO=<ID=non_neuro_AC_nfe_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Non-Finnish European ancestry in the non_neuro subset"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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parents:
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145 ##INFO=<ID=non_neuro_AN_nfe_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Non-Finnish European ancestry in the non_neuro subset"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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146 ##INFO=<ID=non_neuro_AF_nfe_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Non-Finnish European ancestry in the non_neuro subset"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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147 ##INFO=<ID=non_neuro_nhomalt_nfe_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Non-Finnish European ancestry in the non_neuro subset"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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148 ##INFO=<ID=non_neuro_AC_afr,Number=A,Type=Integer,Description="Alternate allele count for samples of African-American/African ancestry in the non_neuro subset"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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149 ##INFO=<ID=non_neuro_AN_afr,Number=1,Type=Integer,Description="Total number of alleles in samples of African-American/African ancestry in the non_neuro subset"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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parents:
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150 ##INFO=<ID=non_neuro_AF_afr,Number=A,Type=Float,Description="Alternate allele frequency in samples of African-American/African ancestry in the non_neuro subset"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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parents:
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151 ##INFO=<ID=non_neuro_nhomalt_afr,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of African-American/African ancestry in the non_neuro subset"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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parents:
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152 ##INFO=<ID=controls_AC_raw,Number=A,Type=Integer,Description="Alternate allele count for samples in the controls subset, before removing low-confidence genotypes"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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parents:
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153 ##INFO=<ID=controls_AN_raw,Number=1,Type=Integer,Description="Total number of alleles in samples in the controls subset, before removing low-confidence genotypes"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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parents:
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154 ##INFO=<ID=controls_AF_raw,Number=A,Type=Float,Description="Alternate allele frequency in samples in the controls subset, before removing low-confidence genotypes"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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parents:
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155 ##INFO=<ID=controls_nhomalt_raw,Number=A,Type=Integer,Description="Count of homozygous individuals in samples in the controls subset, before removing low-confidence genotypes"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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changeset
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156 ##INFO=<ID=controls_AC_male,Number=A,Type=Integer,Description="Alternate allele count for male samples in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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157 ##INFO=<ID=controls_AN_male,Number=1,Type=Integer,Description="Total number of alleles in male samples in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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158 ##INFO=<ID=controls_AF_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples in the controls subset"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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changeset
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159 ##INFO=<ID=controls_nhomalt_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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parents:
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changeset
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160 ##INFO=<ID=non_topmed_AC_male,Number=A,Type=Integer,Description="Alternate allele count for male samples in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
161 ##INFO=<ID=non_topmed_AN_male,Number=1,Type=Integer,Description="Total number of alleles in male samples in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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parents:
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162 ##INFO=<ID=non_topmed_AF_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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163 ##INFO=<ID=non_topmed_nhomalt_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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164 ##INFO=<ID=controls_AC_nfe_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Non-Finnish European ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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165 ##INFO=<ID=controls_AN_nfe_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Non-Finnish European ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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166 ##INFO=<ID=controls_AF_nfe_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Non-Finnish European ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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changeset
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167 ##INFO=<ID=controls_nhomalt_nfe_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Non-Finnish European ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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|
168 ##INFO=<ID=non_neuro_AC_amr,Number=A,Type=Integer,Description="Alternate allele count for samples of Latino ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
169 ##INFO=<ID=non_neuro_AN_amr,Number=1,Type=Integer,Description="Total number of alleles in samples of Latino ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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changeset
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170 ##INFO=<ID=non_neuro_AF_amr,Number=A,Type=Float,Description="Alternate allele frequency in samples of Latino ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
171 ##INFO=<ID=non_neuro_nhomalt_amr,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Latino ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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changeset
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172 ##INFO=<ID=non_neuro_AC_eas_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of East Asian ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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changeset
|
173 ##INFO=<ID=non_neuro_AN_eas_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of East Asian ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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174 ##INFO=<ID=non_neuro_AF_eas_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of East Asian ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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175 ##INFO=<ID=non_neuro_nhomalt_eas_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of East Asian ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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|
176 ##INFO=<ID=AC_asj_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Ashkenazi Jewish ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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177 ##INFO=<ID=AN_asj_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Ashkenazi Jewish ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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178 ##INFO=<ID=AF_asj_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Ashkenazi Jewish ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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179 ##INFO=<ID=nhomalt_asj_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Ashkenazi Jewish ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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180 ##INFO=<ID=controls_AC_nfe_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Non-Finnish European ancestry in the controls subset"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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181 ##INFO=<ID=controls_AN_nfe_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Non-Finnish European ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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182 ##INFO=<ID=controls_AF_nfe_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Non-Finnish European ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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183 ##INFO=<ID=controls_nhomalt_nfe_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Non-Finnish European ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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|
184 ##INFO=<ID=non_neuro_AC_fin,Number=A,Type=Integer,Description="Alternate allele count for samples of Finnish ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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185 ##INFO=<ID=non_neuro_AN_fin,Number=1,Type=Integer,Description="Total number of alleles in samples of Finnish ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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186 ##INFO=<ID=non_neuro_AF_fin,Number=A,Type=Float,Description="Alternate allele frequency in samples of Finnish ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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187 ##INFO=<ID=non_neuro_nhomalt_fin,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Finnish ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
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188 ##INFO=<ID=AC_oth_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Other ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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changeset
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189 ##INFO=<ID=AN_oth_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Other ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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changeset
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190 ##INFO=<ID=AF_oth_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Other ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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changeset
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191 ##INFO=<ID=nhomalt_oth_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Other ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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192 ##INFO=<ID=controls_AC_nfe,Number=A,Type=Integer,Description="Alternate allele count for samples of Non-Finnish European ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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193 ##INFO=<ID=controls_AN_nfe,Number=1,Type=Integer,Description="Total number of alleles in samples of Non-Finnish European ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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changeset
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194 ##INFO=<ID=controls_AF_nfe,Number=A,Type=Float,Description="Alternate allele frequency in samples of Non-Finnish European ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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195 ##INFO=<ID=controls_nhomalt_nfe,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Non-Finnish European ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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changeset
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196 ##INFO=<ID=controls_AC_oth_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Other ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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changeset
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197 ##INFO=<ID=controls_AN_oth_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Other ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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changeset
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198 ##INFO=<ID=controls_AF_oth_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Other ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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199 ##INFO=<ID=controls_nhomalt_oth_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Other ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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changeset
|
200 ##INFO=<ID=controls_AC_asj,Number=A,Type=Integer,Description="Alternate allele count for samples of Ashkenazi Jewish ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
201 ##INFO=<ID=controls_AN_asj,Number=1,Type=Integer,Description="Total number of alleles in samples of Ashkenazi Jewish ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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parents:
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202 ##INFO=<ID=controls_AF_asj,Number=A,Type=Float,Description="Alternate allele frequency in samples of Ashkenazi Jewish ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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203 ##INFO=<ID=controls_nhomalt_asj,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Ashkenazi Jewish ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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204 ##INFO=<ID=non_neuro_AC_amr_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Latino ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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parents:
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205 ##INFO=<ID=non_neuro_AN_amr_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Latino ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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parents:
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206 ##INFO=<ID=non_neuro_AF_amr_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Latino ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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parents:
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207 ##INFO=<ID=non_neuro_nhomalt_amr_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Latino ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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208 ##INFO=<ID=controls_AC_nfe_nwe,Number=A,Type=Integer,Description="Alternate allele count for samples of North-Western European ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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parents:
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209 ##INFO=<ID=controls_AN_nfe_nwe,Number=1,Type=Integer,Description="Total number of alleles in samples of North-Western European ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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210 ##INFO=<ID=controls_AF_nfe_nwe,Number=A,Type=Float,Description="Alternate allele frequency in samples of North-Western European ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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parents:
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211 ##INFO=<ID=controls_nhomalt_nfe_nwe,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of North-Western European ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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212 ##INFO=<ID=AC_nfe_nwe,Number=A,Type=Integer,Description="Alternate allele count for samples of North-Western European ancestry"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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213 ##INFO=<ID=AN_nfe_nwe,Number=1,Type=Integer,Description="Total number of alleles in samples of North-Western European ancestry"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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parents:
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214 ##INFO=<ID=AF_nfe_nwe,Number=A,Type=Float,Description="Alternate allele frequency in samples of North-Western European ancestry"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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215 ##INFO=<ID=nhomalt_nfe_nwe,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of North-Western European ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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216 ##INFO=<ID=controls_AC_nfe_seu,Number=A,Type=Integer,Description="Alternate allele count for samples of Southern European ancestry in the controls subset"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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parents:
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217 ##INFO=<ID=controls_AN_nfe_seu,Number=1,Type=Integer,Description="Total number of alleles in samples of Southern European ancestry in the controls subset"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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218 ##INFO=<ID=controls_AF_nfe_seu,Number=A,Type=Float,Description="Alternate allele frequency in samples of Southern European ancestry in the controls subset"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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parents:
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219 ##INFO=<ID=controls_nhomalt_nfe_seu,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Southern European ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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220 ##INFO=<ID=non_neuro_AC_amr_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Latino ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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parents:
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221 ##INFO=<ID=non_neuro_AN_amr_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Latino ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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222 ##INFO=<ID=non_neuro_AF_amr_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Latino ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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223 ##INFO=<ID=non_neuro_nhomalt_amr_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Latino ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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parents:
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224 ##INFO=<ID=non_neuro_AC_nfe_onf,Number=A,Type=Integer,Description="Alternate allele count for samples of Other Non-Finnish European ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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225 ##INFO=<ID=non_neuro_AN_nfe_onf,Number=1,Type=Integer,Description="Total number of alleles in samples of Other Non-Finnish European ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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parents:
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226 ##INFO=<ID=non_neuro_AF_nfe_onf,Number=A,Type=Float,Description="Alternate allele frequency in samples of Other Non-Finnish European ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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parents:
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227 ##INFO=<ID=non_neuro_nhomalt_nfe_onf,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Other Non-Finnish European ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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228 ##INFO=<ID=non_topmed_AC_eas_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of East Asian ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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229 ##INFO=<ID=non_topmed_AN_eas_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of East Asian ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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230 ##INFO=<ID=non_topmed_AF_eas_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of East Asian ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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231 ##INFO=<ID=non_topmed_nhomalt_eas_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of East Asian ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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232 ##INFO=<ID=controls_AC_amr_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Latino ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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233 ##INFO=<ID=controls_AN_amr_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Latino ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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234 ##INFO=<ID=controls_AF_amr_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Latino ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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235 ##INFO=<ID=controls_nhomalt_amr_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Latino ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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236 ##INFO=<ID=non_neuro_AC_fin_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Finnish ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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237 ##INFO=<ID=non_neuro_AN_fin_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Finnish ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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changeset
|
238 ##INFO=<ID=non_neuro_AF_fin_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Finnish ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
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239 ##INFO=<ID=non_neuro_nhomalt_fin_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Finnish ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
240 ##INFO=<ID=AC_female,Number=A,Type=Integer,Description="Alternate allele count for female samples"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
241 ##INFO=<ID=AN_female,Number=1,Type=Integer,Description="Total number of alleles in female samples"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
242 ##INFO=<ID=AF_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
243 ##INFO=<ID=nhomalt_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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changeset
|
244 ##INFO=<ID=non_neuro_AC_oth_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Other ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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changeset
|
245 ##INFO=<ID=non_neuro_AN_oth_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Other ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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changeset
|
246 ##INFO=<ID=non_neuro_AF_oth_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Other ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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changeset
|
247 ##INFO=<ID=non_neuro_nhomalt_oth_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Other ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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changeset
|
248 ##INFO=<ID=non_topmed_AC_nfe_est,Number=A,Type=Integer,Description="Alternate allele count for samples of Estonian ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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changeset
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249 ##INFO=<ID=non_topmed_AN_nfe_est,Number=1,Type=Integer,Description="Total number of alleles in samples of Estonian ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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changeset
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250 ##INFO=<ID=non_topmed_AF_nfe_est,Number=A,Type=Float,Description="Alternate allele frequency in samples of Estonian ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
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251 ##INFO=<ID=non_topmed_nhomalt_nfe_est,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Estonian ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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changeset
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252 ##INFO=<ID=non_topmed_AC_nfe_nwe,Number=A,Type=Integer,Description="Alternate allele count for samples of North-Western European ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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changeset
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253 ##INFO=<ID=non_topmed_AN_nfe_nwe,Number=1,Type=Integer,Description="Total number of alleles in samples of North-Western European ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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changeset
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254 ##INFO=<ID=non_topmed_AF_nfe_nwe,Number=A,Type=Float,Description="Alternate allele frequency in samples of North-Western European ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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changeset
|
255 ##INFO=<ID=non_topmed_nhomalt_nfe_nwe,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of North-Western European ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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changeset
|
256 ##INFO=<ID=non_topmed_AC_amr_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Latino ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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changeset
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257 ##INFO=<ID=non_topmed_AN_amr_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Latino ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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changeset
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258 ##INFO=<ID=non_topmed_AF_amr_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Latino ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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changeset
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259 ##INFO=<ID=non_topmed_nhomalt_amr_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Latino ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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changeset
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260 ##INFO=<ID=non_topmed_AC_nfe_onf,Number=A,Type=Integer,Description="Alternate allele count for samples of Other Non-Finnish European ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
261 ##INFO=<ID=non_topmed_AN_nfe_onf,Number=1,Type=Integer,Description="Total number of alleles in samples of Other Non-Finnish European ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
262 ##INFO=<ID=non_topmed_AF_nfe_onf,Number=A,Type=Float,Description="Alternate allele frequency in samples of Other Non-Finnish European ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
263 ##INFO=<ID=non_topmed_nhomalt_nfe_onf,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Other Non-Finnish European ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
264 ##INFO=<ID=controls_AC_eas_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of East Asian ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
265 ##INFO=<ID=controls_AN_eas_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of East Asian ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
266 ##INFO=<ID=controls_AF_eas_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of East Asian ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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parents:
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267 ##INFO=<ID=controls_nhomalt_eas_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of East Asian ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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parents:
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268 ##INFO=<ID=controls_AC_oth_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Other ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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parents:
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269 ##INFO=<ID=controls_AN_oth_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Other ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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parents:
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270 ##INFO=<ID=controls_AF_oth_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Other ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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parents:
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271 ##INFO=<ID=controls_nhomalt_oth_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Other ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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parents:
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272 ##INFO=<ID=non_topmed_AC,Number=A,Type=Integer,Description="Alternate allele count for samples in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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parents:
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273 ##INFO=<ID=non_topmed_AN,Number=1,Type=Integer,Description="Total number of alleles in samples in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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parents:
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274 ##INFO=<ID=non_topmed_AF,Number=A,Type=Float,Description="Alternate allele frequency in samples in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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parents:
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275 ##INFO=<ID=non_topmed_nhomalt,Number=A,Type=Integer,Description="Count of homozygous individuals in samples in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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parents:
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276 ##INFO=<ID=controls_AC_fin,Number=A,Type=Integer,Description="Alternate allele count for samples of Finnish ancestry in the controls subset"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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changeset
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277 ##INFO=<ID=controls_AN_fin,Number=1,Type=Integer,Description="Total number of alleles in samples of Finnish ancestry in the controls subset"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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parents:
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278 ##INFO=<ID=controls_AF_fin,Number=A,Type=Float,Description="Alternate allele frequency in samples of Finnish ancestry in the controls subset"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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parents:
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changeset
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279 ##INFO=<ID=controls_nhomalt_fin,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Finnish ancestry in the controls subset"> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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parents:
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changeset
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280 ##INFO=<ID=non_neuro_AC_nfe,Number=A,Type=Integer,Description="Alternate allele count for samples of Non-Finnish European ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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parents:
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changeset
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281 ##INFO=<ID=non_neuro_AN_nfe,Number=1,Type=Integer,Description="Total number of alleles in samples of Non-Finnish European ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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changeset
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282 ##INFO=<ID=non_neuro_AF_nfe,Number=A,Type=Float,Description="Alternate allele frequency in samples of Non-Finnish European ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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changeset
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283 ##INFO=<ID=non_neuro_nhomalt_nfe,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Non-Finnish European ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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changeset
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284 ##INFO=<ID=non_neuro_AC_fin_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Finnish ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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285 ##INFO=<ID=non_neuro_AN_fin_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Finnish ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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changeset
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286 ##INFO=<ID=non_neuro_AF_fin_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Finnish ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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changeset
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287 ##INFO=<ID=non_neuro_nhomalt_fin_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Finnish ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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changeset
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288 ##INFO=<ID=non_topmed_AC_nfe_seu,Number=A,Type=Integer,Description="Alternate allele count for samples of Southern European ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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changeset
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289 ##INFO=<ID=non_topmed_AN_nfe_seu,Number=1,Type=Integer,Description="Total number of alleles in samples of Southern European ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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changeset
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290 ##INFO=<ID=non_topmed_AF_nfe_seu,Number=A,Type=Float,Description="Alternate allele frequency in samples of Southern European ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
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291 ##INFO=<ID=non_topmed_nhomalt_nfe_seu,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Southern European ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
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292 ##INFO=<ID=controls_AC_eas_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of East Asian ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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changeset
|
293 ##INFO=<ID=controls_AN_eas_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of East Asian ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
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294 ##INFO=<ID=controls_AF_eas_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of East Asian ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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changeset
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295 ##INFO=<ID=controls_nhomalt_eas_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of East Asian ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
296 ##INFO=<ID=non_topmed_AC_asj,Number=A,Type=Integer,Description="Alternate allele count for samples of Ashkenazi Jewish ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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changeset
|
297 ##INFO=<ID=non_topmed_AN_asj,Number=1,Type=Integer,Description="Total number of alleles in samples of Ashkenazi Jewish ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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changeset
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298 ##INFO=<ID=non_topmed_AF_asj,Number=A,Type=Float,Description="Alternate allele frequency in samples of Ashkenazi Jewish ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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changeset
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299 ##INFO=<ID=non_topmed_nhomalt_asj,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Ashkenazi Jewish ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
300 ##INFO=<ID=controls_AC_nfe_onf,Number=A,Type=Integer,Description="Alternate allele count for samples of Other Non-Finnish European ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
301 ##INFO=<ID=controls_AN_nfe_onf,Number=1,Type=Integer,Description="Total number of alleles in samples of Other Non-Finnish European ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
302 ##INFO=<ID=controls_AF_nfe_onf,Number=A,Type=Float,Description="Alternate allele frequency in samples of Other Non-Finnish European ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
303 ##INFO=<ID=controls_nhomalt_nfe_onf,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Other Non-Finnish European ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
304 ##INFO=<ID=non_neuro_AC,Number=A,Type=Integer,Description="Alternate allele count for samples in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
305 ##INFO=<ID=non_neuro_AN,Number=1,Type=Integer,Description="Total number of alleles in samples in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
306 ##INFO=<ID=non_neuro_AF,Number=A,Type=Float,Description="Alternate allele frequency in samples in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
307 ##INFO=<ID=non_neuro_nhomalt,Number=A,Type=Integer,Description="Count of homozygous individuals in samples in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
308 ##INFO=<ID=non_topmed_AC_nfe,Number=A,Type=Integer,Description="Alternate allele count for samples of Non-Finnish European ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
309 ##INFO=<ID=non_topmed_AN_nfe,Number=1,Type=Integer,Description="Total number of alleles in samples of Non-Finnish European ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
310 ##INFO=<ID=non_topmed_AF_nfe,Number=A,Type=Float,Description="Alternate allele frequency in samples of Non-Finnish European ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
311 ##INFO=<ID=non_topmed_nhomalt_nfe,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Non-Finnish European ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
312 ##INFO=<ID=non_topmed_AC_raw,Number=A,Type=Integer,Description="Alternate allele count for samples in the non_topmed subset, before removing low-confidence genotypes"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
313 ##INFO=<ID=non_topmed_AN_raw,Number=1,Type=Integer,Description="Total number of alleles in samples in the non_topmed subset, before removing low-confidence genotypes"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
314 ##INFO=<ID=non_topmed_AF_raw,Number=A,Type=Float,Description="Alternate allele frequency in samples in the non_topmed subset, before removing low-confidence genotypes"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
315 ##INFO=<ID=non_topmed_nhomalt_raw,Number=A,Type=Integer,Description="Count of homozygous individuals in samples in the non_topmed subset, before removing low-confidence genotypes"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
316 ##INFO=<ID=non_neuro_AC_nfe_est,Number=A,Type=Integer,Description="Alternate allele count for samples of Estonian ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
317 ##INFO=<ID=non_neuro_AN_nfe_est,Number=1,Type=Integer,Description="Total number of alleles in samples of Estonian ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
318 ##INFO=<ID=non_neuro_AF_nfe_est,Number=A,Type=Float,Description="Alternate allele frequency in samples of Estonian ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
319 ##INFO=<ID=non_neuro_nhomalt_nfe_est,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Estonian ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
320 ##INFO=<ID=non_topmed_AC_oth_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Other ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
321 ##INFO=<ID=non_topmed_AN_oth_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Other ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
322 ##INFO=<ID=non_topmed_AF_oth_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Other ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
323 ##INFO=<ID=non_topmed_nhomalt_oth_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Other ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
324 ##INFO=<ID=AC_nfe_est,Number=A,Type=Integer,Description="Alternate allele count for samples of Estonian ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
325 ##INFO=<ID=AN_nfe_est,Number=1,Type=Integer,Description="Total number of alleles in samples of Estonian ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
326 ##INFO=<ID=AF_nfe_est,Number=A,Type=Float,Description="Alternate allele frequency in samples of Estonian ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
327 ##INFO=<ID=nhomalt_nfe_est,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Estonian ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
328 ##INFO=<ID=non_topmed_AC_afr_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of African-American/African ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
329 ##INFO=<ID=non_topmed_AN_afr_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of African-American/African ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
330 ##INFO=<ID=non_topmed_AF_afr_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of African-American/African ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
331 ##INFO=<ID=non_topmed_nhomalt_afr_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of African-American/African ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
332 ##INFO=<ID=AC_eas_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of East Asian ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
333 ##INFO=<ID=AN_eas_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of East Asian ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
334 ##INFO=<ID=AF_eas_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of East Asian ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
335 ##INFO=<ID=nhomalt_eas_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of East Asian ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
336 ##INFO=<ID=controls_AC_eas,Number=A,Type=Integer,Description="Alternate allele count for samples of East Asian ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
337 ##INFO=<ID=controls_AN_eas,Number=1,Type=Integer,Description="Total number of alleles in samples of East Asian ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
338 ##INFO=<ID=controls_AF_eas,Number=A,Type=Float,Description="Alternate allele frequency in samples of East Asian ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
339 ##INFO=<ID=controls_nhomalt_eas,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of East Asian ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
340 ##INFO=<ID=non_neuro_AC_eas_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of East Asian ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
341 ##INFO=<ID=non_neuro_AN_eas_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of East Asian ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
342 ##INFO=<ID=non_neuro_AF_eas_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of East Asian ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
343 ##INFO=<ID=non_neuro_nhomalt_eas_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of East Asian ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
344 ##INFO=<ID=non_neuro_AC_asj_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Ashkenazi Jewish ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
345 ##INFO=<ID=non_neuro_AN_asj_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Ashkenazi Jewish ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
346 ##INFO=<ID=non_neuro_AF_asj_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Ashkenazi Jewish ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
347 ##INFO=<ID=non_neuro_nhomalt_asj_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Ashkenazi Jewish ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
348 ##INFO=<ID=controls_AC_oth,Number=A,Type=Integer,Description="Alternate allele count for samples of Other ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
349 ##INFO=<ID=controls_AN_oth,Number=1,Type=Integer,Description="Total number of alleles in samples of Other ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
350 ##INFO=<ID=controls_AF_oth,Number=A,Type=Float,Description="Alternate allele frequency in samples of Other ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
351 ##INFO=<ID=controls_nhomalt_oth,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Other ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
352 ##INFO=<ID=AC_nfe,Number=A,Type=Integer,Description="Alternate allele count for samples of Non-Finnish European ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
353 ##INFO=<ID=AN_nfe,Number=1,Type=Integer,Description="Total number of alleles in samples of Non-Finnish European ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
354 ##INFO=<ID=AF_nfe,Number=A,Type=Float,Description="Alternate allele frequency in samples of Non-Finnish European ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
355 ##INFO=<ID=nhomalt_nfe,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Non-Finnish European ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
356 ##INFO=<ID=non_topmed_AC_female,Number=A,Type=Integer,Description="Alternate allele count for female samples in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
357 ##INFO=<ID=non_topmed_AN_female,Number=1,Type=Integer,Description="Total number of alleles in female samples in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
358 ##INFO=<ID=non_topmed_AF_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
359 ##INFO=<ID=non_topmed_nhomalt_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
360 ##INFO=<ID=non_neuro_AC_asj,Number=A,Type=Integer,Description="Alternate allele count for samples of Ashkenazi Jewish ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
361 ##INFO=<ID=non_neuro_AN_asj,Number=1,Type=Integer,Description="Total number of alleles in samples of Ashkenazi Jewish ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
362 ##INFO=<ID=non_neuro_AF_asj,Number=A,Type=Float,Description="Alternate allele frequency in samples of Ashkenazi Jewish ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
363 ##INFO=<ID=non_neuro_nhomalt_asj,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Ashkenazi Jewish ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
364 ##INFO=<ID=non_topmed_AC_eas_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of East Asian ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
365 ##INFO=<ID=non_topmed_AN_eas_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of East Asian ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
366 ##INFO=<ID=non_topmed_AF_eas_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of East Asian ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
367 ##INFO=<ID=non_topmed_nhomalt_eas_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of East Asian ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
368 ##INFO=<ID=non_neuro_AC_raw,Number=A,Type=Integer,Description="Alternate allele count for samples in the non_neuro subset, before removing low-confidence genotypes"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
369 ##INFO=<ID=non_neuro_AN_raw,Number=1,Type=Integer,Description="Total number of alleles in samples in the non_neuro subset, before removing low-confidence genotypes"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
370 ##INFO=<ID=non_neuro_AF_raw,Number=A,Type=Float,Description="Alternate allele frequency in samples in the non_neuro subset, before removing low-confidence genotypes"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
371 ##INFO=<ID=non_neuro_nhomalt_raw,Number=A,Type=Integer,Description="Count of homozygous individuals in samples in the non_neuro subset, before removing low-confidence genotypes"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
372 ##INFO=<ID=non_topmed_AC_eas,Number=A,Type=Integer,Description="Alternate allele count for samples of East Asian ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
373 ##INFO=<ID=non_topmed_AN_eas,Number=1,Type=Integer,Description="Total number of alleles in samples of East Asian ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
374 ##INFO=<ID=non_topmed_AF_eas,Number=A,Type=Float,Description="Alternate allele frequency in samples of East Asian ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
375 ##INFO=<ID=non_topmed_nhomalt_eas,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of East Asian ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
376 ##INFO=<ID=non_topmed_AC_fin_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Finnish ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
377 ##INFO=<ID=non_topmed_AN_fin_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Finnish ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
378 ##INFO=<ID=non_topmed_AF_fin_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Finnish ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
379 ##INFO=<ID=non_topmed_nhomalt_fin_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Finnish ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
380 ##INFO=<ID=AC_fin,Number=A,Type=Integer,Description="Alternate allele count for samples of Finnish ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
381 ##INFO=<ID=AN_fin,Number=1,Type=Integer,Description="Total number of alleles in samples of Finnish ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
382 ##INFO=<ID=AF_fin,Number=A,Type=Float,Description="Alternate allele frequency in samples of Finnish ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
383 ##INFO=<ID=nhomalt_fin,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Finnish ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
384 ##INFO=<ID=AC_nfe_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Non-Finnish European ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
385 ##INFO=<ID=AN_nfe_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Non-Finnish European ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
386 ##INFO=<ID=AF_nfe_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Non-Finnish European ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
387 ##INFO=<ID=nhomalt_nfe_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Non-Finnish European ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
388 ##INFO=<ID=controls_AC_amr_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Latino ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
389 ##INFO=<ID=controls_AN_amr_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Latino ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
390 ##INFO=<ID=controls_AF_amr_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Latino ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
391 ##INFO=<ID=controls_nhomalt_amr_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Latino ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
392 ##INFO=<ID=controls_AC_afr_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of African-American/African ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
393 ##INFO=<ID=controls_AN_afr_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of African-American/African ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
394 ##INFO=<ID=controls_AF_afr_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of African-American/African ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
395 ##INFO=<ID=controls_nhomalt_afr_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of African-American/African ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
396 ##INFO=<ID=controls_AC_amr,Number=A,Type=Integer,Description="Alternate allele count for samples of Latino ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
397 ##INFO=<ID=controls_AN_amr,Number=1,Type=Integer,Description="Total number of alleles in samples of Latino ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
398 ##INFO=<ID=controls_AF_amr,Number=A,Type=Float,Description="Alternate allele frequency in samples of Latino ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
399 ##INFO=<ID=controls_nhomalt_amr,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Latino ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
400 ##INFO=<ID=AC_asj_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Ashkenazi Jewish ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
401 ##INFO=<ID=AN_asj_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Ashkenazi Jewish ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
402 ##INFO=<ID=AF_asj_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Ashkenazi Jewish ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
403 ##INFO=<ID=nhomalt_asj_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Ashkenazi Jewish ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
404 ##INFO=<ID=non_neuro_AC_eas,Number=A,Type=Integer,Description="Alternate allele count for samples of East Asian ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
405 ##INFO=<ID=non_neuro_AN_eas,Number=1,Type=Integer,Description="Total number of alleles in samples of East Asian ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
406 ##INFO=<ID=non_neuro_AF_eas,Number=A,Type=Float,Description="Alternate allele frequency in samples of East Asian ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
407 ##INFO=<ID=non_neuro_nhomalt_eas,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of East Asian ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
408 ##INFO=<ID=non_neuro_AC_male,Number=A,Type=Integer,Description="Alternate allele count for male samples in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
409 ##INFO=<ID=non_neuro_AN_male,Number=1,Type=Integer,Description="Total number of alleles in male samples in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
410 ##INFO=<ID=non_neuro_AF_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
411 ##INFO=<ID=non_neuro_nhomalt_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
412 ##INFO=<ID=AC_asj,Number=A,Type=Integer,Description="Alternate allele count for samples of Ashkenazi Jewish ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
413 ##INFO=<ID=AN_asj,Number=1,Type=Integer,Description="Total number of alleles in samples of Ashkenazi Jewish ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
414 ##INFO=<ID=AF_asj,Number=A,Type=Float,Description="Alternate allele frequency in samples of Ashkenazi Jewish ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
415 ##INFO=<ID=nhomalt_asj,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Ashkenazi Jewish ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
416 ##INFO=<ID=controls_AC_nfe_est,Number=A,Type=Integer,Description="Alternate allele count for samples of Estonian ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
417 ##INFO=<ID=controls_AN_nfe_est,Number=1,Type=Integer,Description="Total number of alleles in samples of Estonian ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
418 ##INFO=<ID=controls_AF_nfe_est,Number=A,Type=Float,Description="Alternate allele frequency in samples of Estonian ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
419 ##INFO=<ID=controls_nhomalt_nfe_est,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Estonian ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
420 ##INFO=<ID=non_topmed_AC_asj_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Ashkenazi Jewish ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
421 ##INFO=<ID=non_topmed_AN_asj_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Ashkenazi Jewish ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
422 ##INFO=<ID=non_topmed_AF_asj_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Ashkenazi Jewish ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
423 ##INFO=<ID=non_topmed_nhomalt_asj_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Ashkenazi Jewish ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
424 ##INFO=<ID=non_topmed_AC_oth,Number=A,Type=Integer,Description="Alternate allele count for samples of Other ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
425 ##INFO=<ID=non_topmed_AN_oth,Number=1,Type=Integer,Description="Total number of alleles in samples of Other ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
426 ##INFO=<ID=non_topmed_AF_oth,Number=A,Type=Float,Description="Alternate allele frequency in samples of Other ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
427 ##INFO=<ID=non_topmed_nhomalt_oth,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Other ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
428 ##INFO=<ID=non_topmed_AC_fin_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Finnish ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
429 ##INFO=<ID=non_topmed_AN_fin_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Finnish ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
430 ##INFO=<ID=non_topmed_AF_fin_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Finnish ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
431 ##INFO=<ID=non_topmed_nhomalt_fin_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Finnish ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
432 ##INFO=<ID=AC_oth,Number=A,Type=Integer,Description="Alternate allele count for samples of Other ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
433 ##INFO=<ID=AN_oth,Number=1,Type=Integer,Description="Total number of alleles in samples of Other ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
434 ##INFO=<ID=AF_oth,Number=A,Type=Float,Description="Alternate allele frequency in samples of Other ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
435 ##INFO=<ID=nhomalt_oth,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Other ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
436 ##INFO=<ID=non_neuro_AC_nfe_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Non-Finnish European ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
437 ##INFO=<ID=non_neuro_AN_nfe_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Non-Finnish European ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
438 ##INFO=<ID=non_neuro_AF_nfe_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Non-Finnish European ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
439 ##INFO=<ID=non_neuro_nhomalt_nfe_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Non-Finnish European ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
440 ##INFO=<ID=controls_AC_female,Number=A,Type=Integer,Description="Alternate allele count for female samples in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
441 ##INFO=<ID=controls_AN_female,Number=1,Type=Integer,Description="Total number of alleles in female samples in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
442 ##INFO=<ID=controls_AF_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
443 ##INFO=<ID=controls_nhomalt_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
444 ##INFO=<ID=non_topmed_AC_fin,Number=A,Type=Integer,Description="Alternate allele count for samples of Finnish ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
445 ##INFO=<ID=non_topmed_AN_fin,Number=1,Type=Integer,Description="Total number of alleles in samples of Finnish ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
446 ##INFO=<ID=non_topmed_AF_fin,Number=A,Type=Float,Description="Alternate allele frequency in samples of Finnish ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
447 ##INFO=<ID=non_topmed_nhomalt_fin,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Finnish ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
448 ##INFO=<ID=non_topmed_AC_nfe_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Non-Finnish European ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
449 ##INFO=<ID=non_topmed_AN_nfe_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Non-Finnish European ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
450 ##INFO=<ID=non_topmed_AF_nfe_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Non-Finnish European ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
451 ##INFO=<ID=non_topmed_nhomalt_nfe_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Non-Finnish European ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
452 ##INFO=<ID=controls_AC_asj_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Ashkenazi Jewish ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
453 ##INFO=<ID=controls_AN_asj_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Ashkenazi Jewish ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
454 ##INFO=<ID=controls_AF_asj_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Ashkenazi Jewish ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
455 ##INFO=<ID=controls_nhomalt_asj_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Ashkenazi Jewish ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
456 ##INFO=<ID=non_topmed_AC_asj_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Ashkenazi Jewish ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
457 ##INFO=<ID=non_topmed_AN_asj_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Ashkenazi Jewish ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
458 ##INFO=<ID=non_topmed_AF_asj_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Ashkenazi Jewish ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
459 ##INFO=<ID=non_topmed_nhomalt_asj_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Ashkenazi Jewish ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
460 ##INFO=<ID=non_neuro_AC_oth,Number=A,Type=Integer,Description="Alternate allele count for samples of Other ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
461 ##INFO=<ID=non_neuro_AN_oth,Number=1,Type=Integer,Description="Total number of alleles in samples of Other ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
462 ##INFO=<ID=non_neuro_AF_oth,Number=A,Type=Float,Description="Alternate allele frequency in samples of Other ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
463 ##INFO=<ID=non_neuro_nhomalt_oth,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Other ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
464 ##INFO=<ID=AC_male,Number=A,Type=Integer,Description="Alternate allele count for male samples"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
465 ##INFO=<ID=AN_male,Number=1,Type=Integer,Description="Total number of alleles in male samples"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
466 ##INFO=<ID=AF_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
467 ##INFO=<ID=nhomalt_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
468 ##INFO=<ID=controls_AC_fin_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Finnish ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
469 ##INFO=<ID=controls_AN_fin_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Finnish ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
470 ##INFO=<ID=controls_AF_fin_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Finnish ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
471 ##INFO=<ID=controls_nhomalt_fin_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Finnish ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
472 ##INFO=<ID=controls_AC_asj_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Ashkenazi Jewish ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
473 ##INFO=<ID=controls_AN_asj_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Ashkenazi Jewish ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
474 ##INFO=<ID=controls_AF_asj_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Ashkenazi Jewish ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
475 ##INFO=<ID=controls_nhomalt_asj_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Ashkenazi Jewish ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
476 ##INFO=<ID=AC_amr_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Latino ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
477 ##INFO=<ID=AN_amr_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Latino ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
478 ##INFO=<ID=AF_amr_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Latino ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
479 ##INFO=<ID=nhomalt_amr_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Latino ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
480 ##INFO=<ID=AC_amr_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Latino ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
481 ##INFO=<ID=AN_amr_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Latino ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
482 ##INFO=<ID=AF_amr_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Latino ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
483 ##INFO=<ID=nhomalt_amr_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Latino ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
484 ##INFO=<ID=AC_oth_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Other ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
485 ##INFO=<ID=AN_oth_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Other ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
486 ##INFO=<ID=AF_oth_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Other ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
487 ##INFO=<ID=nhomalt_oth_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Other ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
488 ##INFO=<ID=non_neuro_AC_nfe_seu,Number=A,Type=Integer,Description="Alternate allele count for samples of Southern European ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
489 ##INFO=<ID=non_neuro_AN_nfe_seu,Number=1,Type=Integer,Description="Total number of alleles in samples of Southern European ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
490 ##INFO=<ID=non_neuro_AF_nfe_seu,Number=A,Type=Float,Description="Alternate allele frequency in samples of Southern European ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
491 ##INFO=<ID=non_neuro_nhomalt_nfe_seu,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Southern European ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
492 ##INFO=<ID=non_topmed_AC_afr_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of African-American/African ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
493 ##INFO=<ID=non_topmed_AN_afr_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of African-American/African ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
494 ##INFO=<ID=non_topmed_AF_afr_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of African-American/African ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
495 ##INFO=<ID=non_topmed_nhomalt_afr_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of African-American/African ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
496 ##INFO=<ID=non_topmed_AC_afr,Number=A,Type=Integer,Description="Alternate allele count for samples of African-American/African ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
497 ##INFO=<ID=non_topmed_AN_afr,Number=1,Type=Integer,Description="Total number of alleles in samples of African-American/African ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
498 ##INFO=<ID=non_topmed_AF_afr,Number=A,Type=Float,Description="Alternate allele frequency in samples of African-American/African ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
499 ##INFO=<ID=non_topmed_nhomalt_afr,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of African-American/African ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
500 ##INFO=<ID=controls_AC,Number=A,Type=Integer,Description="Alternate allele count for samples in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
501 ##INFO=<ID=controls_AN,Number=1,Type=Integer,Description="Total number of alleles in samples in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
502 ##INFO=<ID=controls_AF,Number=A,Type=Float,Description="Alternate allele frequency in samples in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
503 ##INFO=<ID=controls_nhomalt,Number=A,Type=Integer,Description="Count of homozygous individuals in samples in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
504 ##INFO=<ID=non_neuro_AC_oth_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Other ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
505 ##INFO=<ID=non_neuro_AN_oth_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Other ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
506 ##INFO=<ID=non_neuro_AF_oth_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Other ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
507 ##INFO=<ID=non_neuro_nhomalt_oth_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Other ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
508 ##INFO=<ID=non_topmed_faf95_amr,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of Latino ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
509 ##INFO=<ID=non_topmed_faf99_amr,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of Latino ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
510 ##INFO=<ID=faf95_afr,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of African-American/African ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
511 ##INFO=<ID=faf99_afr,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of African-American/African ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
512 ##INFO=<ID=controls_faf95_afr,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of African-American/African ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
513 ##INFO=<ID=controls_faf99_afr,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of African-American/African ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
514 ##INFO=<ID=faf95_amr,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of Latino ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
515 ##INFO=<ID=faf99_amr,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of Latino ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
516 ##INFO=<ID=faf95_eas,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of East Asian ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
517 ##INFO=<ID=faf99_eas,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of East Asian ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
518 ##INFO=<ID=faf95,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
519 ##INFO=<ID=faf99,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
520 ##INFO=<ID=non_neuro_faf95_afr,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of African-American/African ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
521 ##INFO=<ID=non_neuro_faf99_afr,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of African-American/African ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
522 ##INFO=<ID=non_neuro_faf95_amr,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of Latino ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
523 ##INFO=<ID=non_neuro_faf99_amr,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of Latino ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
524 ##INFO=<ID=controls_faf95_nfe,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of Non-Finnish European ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
525 ##INFO=<ID=controls_faf99_nfe,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of Non-Finnish European ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
526 ##INFO=<ID=non_topmed_faf95,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
527 ##INFO=<ID=non_topmed_faf99,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
528 ##INFO=<ID=non_neuro_faf95_nfe,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of Non-Finnish European ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
529 ##INFO=<ID=non_neuro_faf99_nfe,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of Non-Finnish European ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
530 ##INFO=<ID=non_neuro_faf95,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
531 ##INFO=<ID=non_neuro_faf99,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
532 ##INFO=<ID=non_topmed_faf95_nfe,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of Non-Finnish European ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
533 ##INFO=<ID=non_topmed_faf99_nfe,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of Non-Finnish European ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
534 ##INFO=<ID=controls_faf95_eas,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of East Asian ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
535 ##INFO=<ID=controls_faf99_eas,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of East Asian ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
536 ##INFO=<ID=faf95_nfe,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of Non-Finnish European ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
537 ##INFO=<ID=faf99_nfe,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of Non-Finnish European ancestry"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
538 ##INFO=<ID=non_topmed_faf95_eas,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of East Asian ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
539 ##INFO=<ID=non_topmed_faf99_eas,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of East Asian ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
540 ##INFO=<ID=controls_faf95_amr,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of Latino ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
541 ##INFO=<ID=controls_faf99_amr,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of Latino ancestry in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
542 ##INFO=<ID=non_neuro_faf95_eas,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of East Asian ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
543 ##INFO=<ID=non_neuro_faf99_eas,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of East Asian ancestry in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
544 ##INFO=<ID=non_topmed_faf95_afr,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of African-American/African ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
545 ##INFO=<ID=non_topmed_faf99_afr,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of African-American/African ancestry in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
546 ##INFO=<ID=controls_faf95,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
547 ##INFO=<ID=controls_faf99,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
548 ##INFO=<ID=controls_popmax,Number=A,Type=String,Description="Population with maximum AF in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
549 ##INFO=<ID=controls_AC_popmax,Number=A,Type=Integer,Description="Allele count in the population with the maximum AF in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
550 ##INFO=<ID=controls_AN_popmax,Number=A,Type=Integer,Description="Total number of alleles in the population with the maximum AF in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
551 ##INFO=<ID=controls_AF_popmax,Number=A,Type=Float,Description="Maximum allele frequency across populations (excluding samples of Ashkenazi, Finnish, and indeterminate ancestry) in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
552 ##INFO=<ID=controls_nhomalt_popmax,Number=A,Type=Integer,Description="Count of homozygous individuals in the population with the maximum allele frequency in the controls subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
553 ##INFO=<ID=popmax,Number=A,Type=String,Description="Population with maximum AF"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
554 ##INFO=<ID=AC_popmax,Number=A,Type=Integer,Description="Allele count in the population with the maximum AF"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
555 ##INFO=<ID=AN_popmax,Number=A,Type=Integer,Description="Total number of alleles in the population with the maximum AF"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
556 ##INFO=<ID=AF_popmax,Number=A,Type=Float,Description="Maximum allele frequency across populations (excluding samples of Ashkenazi, Finnish, and indeterminate ancestry)"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
557 ##INFO=<ID=nhomalt_popmax,Number=A,Type=Integer,Description="Count of homozygous individuals in the population with the maximum allele frequency"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
558 ##INFO=<ID=age_hist_het_bin_freq,Number=A,Type=String,Description="Histogram of ages of heterozygous individuals; bin edges are: 30.0|35.0|40.0|45.0|50.0|55.0|60.0|65.0|70.0|75.0|80.0; total number of individuals of any genotype bin: 2522|623|663|923|1363|1666|1254|1001|640|362|154|70"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
559 ##INFO=<ID=age_hist_het_n_smaller,Number=A,Type=Integer,Description="Count of age values falling below lowest histogram bin edge for heterozygous individuals"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
560 ##INFO=<ID=age_hist_het_n_larger,Number=A,Type=Integer,Description="Count of age values falling above highest histogram bin edge for heterozygous individuals"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
561 ##INFO=<ID=age_hist_hom_bin_freq,Number=A,Type=String,Description="Histogram of ages of homozygous alternate individuals; bin edges are: 30.0|35.0|40.0|45.0|50.0|55.0|60.0|65.0|70.0|75.0|80.0; total number of individuals of any genotype bin: 2522|623|663|923|1363|1666|1254|1001|640|362|154|70"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
562 ##INFO=<ID=age_hist_hom_n_smaller,Number=A,Type=Integer,Description="Count of age values falling below lowest histogram bin edge for homozygous alternate individuals"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
563 ##INFO=<ID=age_hist_hom_n_larger,Number=A,Type=Integer,Description="Count of age values falling above highest histogram bin edge for homozygous alternate individuals"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
564 ##INFO=<ID=non_neuro_popmax,Number=A,Type=String,Description="Population with maximum AF in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
565 ##INFO=<ID=non_neuro_AC_popmax,Number=A,Type=Integer,Description="Allele count in the population with the maximum AF in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
566 ##INFO=<ID=non_neuro_AN_popmax,Number=A,Type=Integer,Description="Total number of alleles in the population with the maximum AF in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
567 ##INFO=<ID=non_neuro_AF_popmax,Number=A,Type=Float,Description="Maximum allele frequency across populations (excluding samples of Ashkenazi, Finnish, and indeterminate ancestry) in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
568 ##INFO=<ID=non_neuro_nhomalt_popmax,Number=A,Type=Integer,Description="Count of homozygous individuals in the population with the maximum allele frequency in the non_neuro subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
569 ##INFO=<ID=non_topmed_popmax,Number=A,Type=String,Description="Population with maximum AF in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
570 ##INFO=<ID=non_topmed_AC_popmax,Number=A,Type=Integer,Description="Allele count in the population with the maximum AF in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
571 ##INFO=<ID=non_topmed_AN_popmax,Number=A,Type=Integer,Description="Total number of alleles in the population with the maximum AF in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
572 ##INFO=<ID=non_topmed_AF_popmax,Number=A,Type=Float,Description="Maximum allele frequency across populations (excluding samples of Ashkenazi, Finnish, and indeterminate ancestry) in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
573 ##INFO=<ID=non_topmed_nhomalt_popmax,Number=A,Type=Integer,Description="Count of homozygous individuals in the population with the maximum allele frequency in the non_topmed subset"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
574 ##INFO=<ID=vep,Number=.,Type=String,Description="Consequence annotations from Ensembl VEP. Format: Allele|Consequence|IMPACT|SYMBOL|Gene|Feature_type|Feature|BIOTYPE|EXON|INTRON|HGVSc|HGVSp|cDNA_position|CDS_position|Protein_position|Amino_acids|Codons|Existing_variation|ALLELE_NUM|DISTANCE|STRAND|FLAGS|VARIANT_CLASS|MINIMISED|SYMBOL_SOURCE|HGNC_ID|CANONICAL|TSL|APPRIS|CCDS|ENSP|SWISSPROT|TREMBL|UNIPARC|GENE_PHENO|SIFT|PolyPhen|DOMAINS|HGVS_OFFSET|GMAF|AFR_MAF|AMR_MAF|EAS_MAF|EUR_MAF|SAS_MAF|AA_MAF|EA_MAF|ExAC_MAF|ExAC_Adj_MAF|ExAC_AFR_MAF|ExAC_AMR_MAF|ExAC_EAS_MAF|ExAC_FIN_MAF|ExAC_NFE_MAF|ExAC_OTH_MAF|ExAC_SAS_MAF|CLIN_SIG|SOMATIC|PHENO|PUBMED|MOTIF_NAME|MOTIF_POS|HIGH_INF_POS|MOTIF_SCORE_CHANGE|LoF|LoF_filter|LoF_flags|LoF_info"> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
575 ##contig=<ID=1,length=249250621,assembly=gnomAD_GRCh37> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
576 ##contig=<ID=2,length=243199373,assembly=gnomAD_GRCh37> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
577 ##contig=<ID=3,length=198022430,assembly=gnomAD_GRCh37> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
578 ##contig=<ID=4,length=191154276,assembly=gnomAD_GRCh37> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
579 ##contig=<ID=5,length=180915260,assembly=gnomAD_GRCh37> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
580 ##contig=<ID=6,length=171115067,assembly=gnomAD_GRCh37> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
581 ##contig=<ID=7,length=159138663,assembly=gnomAD_GRCh37> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
582 ##contig=<ID=8,length=146364022,assembly=gnomAD_GRCh37> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
583 ##contig=<ID=9,length=141213431,assembly=gnomAD_GRCh37> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
584 ##contig=<ID=10,length=135534747,assembly=gnomAD_GRCh37> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
585 ##contig=<ID=11,length=135006516,assembly=gnomAD_GRCh37> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
586 ##contig=<ID=12,length=133851895,assembly=gnomAD_GRCh37> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
587 ##contig=<ID=13,length=115169878,assembly=gnomAD_GRCh37> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
588 ##contig=<ID=14,length=107349540,assembly=gnomAD_GRCh37> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
589 ##contig=<ID=15,length=102531392,assembly=gnomAD_GRCh37> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
590 ##contig=<ID=16,length=90354753,assembly=gnomAD_GRCh37> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
591 ##contig=<ID=17,length=81195210,assembly=gnomAD_GRCh37> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
592 ##contig=<ID=18,length=78077248,assembly=gnomAD_GRCh37> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
593 ##contig=<ID=19,length=59128983,assembly=gnomAD_GRCh37> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
594 ##contig=<ID=20,length=63025520,assembly=gnomAD_GRCh37> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
595 ##contig=<ID=21,length=48129895,assembly=gnomAD_GRCh37> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
596 ##contig=<ID=22,length=51304566,assembly=gnomAD_GRCh37> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
597 ##contig=<ID=X,length=155270560,assembly=gnomAD_GRCh37> |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
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598 ##contig=<ID=Y,length=59373566,assembly=gnomAD_GRCh37> |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
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599 #CHROM POS ID REF ALT QUAL FILTER INFO |
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02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
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parents:
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changeset
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600 3 46414935 rs938517991 AT A 9974.16 PASS AC=2;AN=250946;AF=7.96984e-06;rf_tp_probability=7.30763e-01;FS=6.15000e-01;InbreedingCoeff=3.17000e-02;MQ=5.14700e+01;MQRankSum=2.82000e-01;QD=2.79400e+01;ReadPosRankSum=-6.86000e-01;SOR=6.59000e-01;BaseQRankSum=-1.73300e+00;ClippingRankSum=-2.84000e-01;DP=8634492;VQSLOD=1.82000e+00;VQSR_culprit=FS;segdup;variant_type=indel;allele_type=del;n_alt_alleles=1;gq_hist_alt_bin_freq=0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|1;gq_hist_all_bin_freq=31|39|36|114|142|101|239|274|152|334|372|207|850|196|647|369|1084|164|1324|119070;dp_hist_alt_bin_freq=0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0;dp_hist_alt_n_larger=1;dp_hist_all_bin_freq=26|124|288|371|677|862|7327|47694|38309|14081|5588|3216|1941|1338|875|614|486|350|301|238;dp_hist_all_n_larger=1042;ab_hist_alt_bin_freq=0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0;AC_nfe_seu=0;AN_nfe_seu=11470;AF_nfe_seu=0.00000e+00;nhomalt_nfe_seu=0;controls_AC_afr_male=0;controls_AN_afr_male=2924;controls_AF_afr_male=0.00000e+00;controls_nhomalt_afr_male=0;non_neuro_AC_eas_kor=0;non_neuro_AN_eas_kor=3816;non_neuro_AF_eas_kor=0.00000e+00;non_neuro_nhomalt_eas_kor=0;non_topmed_AC_amr=0;non_topmed_AN_amr=34444;non_topmed_AF_amr=0.00000e+00;non_topmed_nhomalt_amr=0;non_cancer_AC_asj_female=0;non_cancer_AN_asj_female=4594;non_cancer_AF_asj_female=0.00000e+00;non_cancer_nhomalt_asj_female=0;AC_raw=2;AN_raw=251490;AF_raw=7.95260e-06;nhomalt_raw=1;AC_fin_female=0;AN_fin_female=10346;AF_fin_female=0.00000e+00;nhomalt_fin_female=0;non_cancer_AC_oth_female=0;non_cancer_AN_oth_female=2672;non_cancer_AF_oth_female=0.00000e+00;non_cancer_nhomalt_oth_female=0;AC_nfe_bgr=0;AN_nfe_bgr=2670;AF_nfe_bgr=0.00000e+00;nhomalt_nfe_bgr=0;non_neuro_AC_asj_female=0;non_neuro_AN_asj_female=3084;non_neuro_AF_asj_female=0.00000e+00;non_neuro_nhomalt_asj_female=0;AC_sas_male=0;AN_sas_male=23072;AF_sas_male=0.00000e+00;nhomalt_sas_male=0;non_neuro_AC_afr_male=0;non_neuro_AN_afr_male=6164;non_neuro_AF_afr_male=0.00000e+00;non_neuro_nhomalt_afr_male=0;AC_afr_male=0;AN_afr_male=6186;AF_afr_male=0.00000e+00;nhomalt_afr_male=0;AC_afr=0;AN_afr=16192;AF_afr=0.00000e+00;nhomalt_afr=0;controls_AC_nfe_swe=0;controls_AN_nfe_swe=12810;controls_AF_nfe_swe=0.00000e+00;controls_nhomalt_nfe_swe=0;non_neuro_AC_afr_female=0;non_neuro_AN_afr_female=9990;non_neuro_AF_afr_female=0.00000e+00;non_neuro_nhomalt_afr_female=0;non_topmed_AC_amr_female=0;non_topmed_AN_amr_female=20188;non_topmed_AF_amr_female=0.00000e+00;non_topmed_nhomalt_amr_female=0;non_cancer_AC_female=2;non_cancer_AN_female=107412;non_cancer_AF_female=1.86199e-05;non_cancer_nhomalt_female=1;non_cancer_AC_nfe_onf=0;non_cancer_AN_nfe_onf=24540;non_cancer_AF_nfe_onf=0.00000e+00;non_cancer_nhomalt_nfe_onf=0;non_cancer_AC_male=0;non_cancer_AN_male=129014;non_cancer_AF_male=0.00000e+00;non_cancer_nhomalt_male=0;non_topmed_AC_oth_female=0;non_topmed_AN_oth_female=2870;non_topmed_AF_oth_female=0.00000e+00;non_topmed_nhomalt_oth_female=0;AC_eas_female=0;AN_eas_female=9328;AF_eas_female=0.00000e+00;nhomalt_eas_female=0;non_cancer_AC_sas_female=0;non_cancer_AN_sas_female=7494;non_cancer_AF_sas_female=0.00000e+00;non_cancer_nhomalt_sas_female=0;AC_afr_female=0;AN_afr_female=10006;AF_afr_female=0.00000e+00;nhomalt_afr_female=0;AC_sas=0;AN_sas=30616;AF_sas=0.00000e+00;nhomalt_sas=0;non_neuro_AC_female=2;non_neuro_AN_female=95468;non_neuro_AF_female=2.09494e-05;non_neuro_nhomalt_female=1;controls_AC_afr=0;controls_AN_afr=7164;controls_AF_afr=0.00000e+00;controls_nhomalt_afr=0;non_neuro_AC_eas_jpn=0;non_neuro_AN_eas_jpn=150;non_neuro_AF_eas_jpn=0.00000e+00;non_neuro_nhomalt_eas_jpn=0;AC_nfe_onf=0;AN_nfe_onf=30864;AF_nfe_onf=0.00000e+00;nhomalt_nfe_onf=0;non_cancer_AC_amr_male=0;non_cancer_AN_amr_male=14166;non_cancer_AF_amr_male=0.00000e+00;non_cancer_nhomalt_amr_male=0;controls_AC_fin_male=0;controls_AN_fin_male=6904;controls_AF_fin_male=0.00000e+00;controls_nhomalt_fin_male=0;non_neuro_AC_nfe_nwe=2;non_neuro_AN_nfe_nwe=35284;non_neuro_AF_nfe_nwe=5.66829e-05;non_neuro_nhomalt_nfe_nwe=1;AC_fin_male=0;AN_fin_male=11254;AF_fin_male=0.00000e+00;nhomalt_fin_male=0;AC_nfe_female=2;AN_nfe_female=49966;AF_nfe_female=4.00272e-05;nhomalt_nfe_female=1;AC_amr=0;AN_amr=34578;AF_amr=0.00000e+00;nhomalt_amr=0;non_topmed_AC_nfe_male=0;non_topmed_AN_nfe_male=62670;non_topmed_AF_nfe_male=0.00000e+00;non_topmed_nhomalt_nfe_male=0;non_neuro_AC_sas=0;non_neuro_AN_sas=30608;non_neuro_AF_sas=0.00000e+00;non_neuro_nhomalt_sas=0;non_cancer_AC_fin_male=0;non_cancer_AN_fin_male=11250;non_cancer_AF_fin_male=0.00000e+00;non_cancer_nhomalt_fin_male=0;non_cancer_AC_nfe_seu=0;non_cancer_AN_nfe_seu=10580;non_cancer_AF_nfe_seu=0.00000e+00;non_cancer_nhomalt_nfe_seu=0;AC_eas=0;AN_eas=18394;AF_eas=0.00000e+00;nhomalt_eas=0;nhomalt=1;non_neuro_AC_nfe_female=2;non_neuro_AN_nfe_female=39740;non_neuro_AF_nfe_female=5.03271e-05;non_neuro_nhomalt_nfe_female=1;non_neuro_AC_afr=0;non_neuro_AN_afr=16154;non_neuro_AF_afr=0.00000e+00;non_neuro_nhomalt_afr=0;controls_AC_raw=2;controls_AN_raw=109408;controls_AF_raw=1.82802e-05;controls_nhomalt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r=0.00000e+00;non_neuro_faf99_afr=0.00000e+00;non_cancer_faf95_eas=0.00000e+00;non_cancer_faf99_eas=0.00000e+00;non_neuro_faf95_amr=0.00000e+00;non_neuro_faf99_amr=0.00000e+00;non_topmed_faf95_sas=0.00000e+00;non_topmed_faf99_sas=0.00000e+00;controls_faf95_nfe=7.75000e-06;controls_faf99_nfe=7.90000e-06;non_cancer_faf95_afr=0.00000e+00;non_cancer_faf99_afr=0.00000e+00;non_cancer_faf95_amr=0.00000e+00;non_cancer_faf99_amr=0.00000e+00;non_topmed_faf95=1.36000e-06;non_topmed_faf99=5.10000e-07;non_neuro_faf95_nfe=3.71000e-06;non_neuro_faf99_nfe=3.39000e-06;non_neuro_faf95=1.60000e-06;non_neuro_faf99=1.60000e-06;non_topmed_faf95_nfe=2.98000e-06;non_topmed_faf99_nfe=3.12000e-06;controls_faf95_eas=0.00000e+00;controls_faf99_eas=0.00000e+00;controls_faf95_sas=0.00000e+00;controls_faf99_sas=0.00000e+00;faf95_nfe=2.93000e-06;faf99_nfe=3.10000e-06;non_topmed_faf95_eas=0.00000e+00;non_topmed_faf99_eas=0.00000e+00;controls_faf95_amr=0.00000e+00;controls_faf99_amr=0.00000e+00;non_neuro_faf95_eas=0.00000e+00;non_neuro_faf99_eas=0.00000e+00;non_cancer_faf95_nfe=3.24000e-06;non_cancer_faf99_nfe=3.21000e-06;non_cancer_faf95=1.41000e-06;non_cancer_faf99=5.30000e-07;non_cancer_faf95_sas=0.00000e+00;non_cancer_faf99_sas=0.00000e+00;non_topmed_faf95_afr=0.00000e+00;non_topmed_faf99_afr=0.00000e+00;controls_faf95=3.04000e-06;controls_faf99=3.14000e-06;popmax=nfe;AC_popmax=2;AN_popmax=113380;AF_popmax=1.76398e-05;nhomalt_popmax=1;age_hist_het_bin_freq=0|0|0|0|0|0|0|0|0|0;age_hist_het_n_smaller=0;age_hist_het_n_larger=0;age_hist_hom_bin_freq=0|0|0|0|0|0|0|0|0|0;age_hist_hom_n_smaller=0;age_hist_hom_n_larger=0;non_topmed_popmax=nfe;non_topmed_AC_popmax=2;non_topmed_AN_popmax=111300;non_topmed_AF_popmax=1.79695e-05;non_topmed_nhomalt_popmax=1;non_neuro_popmax=nfe;non_neuro_AC_popmax=2;non_neuro_AN_popmax=89416;non_neuro_AF_popmax=2.23674e-05;non_neuro_nhomalt_popmax=1;non_cancer_popmax=nfe;non_cancer_AC_popmax=2;non_cancer_AN_popmax=102380;non_cancer_AF_popmax=1.95351e-05;non_cancer_nhomalt_popmax=1;controls_popmax=nfe;controls_AC_popmax=2;controls_AN_popmax=42750;controls_AF_popmax=4.67836e-05;controls_nhomalt_popmax=1;vep=-|frameshift_variant|HIGH|CCR5|ENSG00000160791|Transcript|ENST00000292303|protein_coding|2/2||ENST00000292303.4:c.546delT|ENSP00000292303.4:p.Pro183HisfsTer14|689|543|181|H/X|caT/ca||1||1||deletion|1|HGNC|1606||||CCDS2739.1|ENSP00000292303|P51681|Q9UBT9&Q9P1T4&Q5KSY4&Q5EKN0&Q38L21&J7HJP8&E7BJ57&B8LFP0&B8LFN8&A1A490|UPI000000D955|1|||Prints_domain:PR01110&Superfamily_domains:SSF81321&Gene3D:1.20.1070.10&Pfam_domain:PF00001&hmmpanther:PTHR24227&hmmpanther:PTHR24227:SF45&PROSITE_profiles:PS50262|3||||||||||||||||||||||||||HC|||GERP_DIST:922.109800000004&BP_DIST:516&PERCENTILE:0.512747875354108&DIST_FROM_LAST_EXON:-553&50_BP_RULE:FAIL&PHYLOCSF_TOO_SHORT,-|frameshift_variant|HIGH|CCR5|ENSG00000160791|Transcript|ENST00000343801|protein_coding|3/3||ENST00000343801.4:c.546delT|ENSP00000343985.4:p.Pro183HisfsTer14|900|543|181|H/X|caT/ca||1||1||deletion|1|HGNC|1606|YES|||CCDS2739.1|ENSP00000343985|P51681|Q9UBT9&Q9P1T4&Q5KSY4&Q5EKN0&Q38L21&J7HJP8&E7BJ57&B8LFP0&B8LFN8&A1A490|UPI000000D955|1|||PROSITE_profiles:PS50262&hmmpanther:PTHR24227:SF45&hmmpanther:PTHR24227&Gene3D:1.20.1070.10&Pfam_domain:PF00001&Superfamily_domains:SSF81321&Prints_domain:PR01110|3||||||||||||||||||||||||||HC|||GERP_DIST:922.109800000004&BP_DIST:516&PERCENTILE:0.512747875354108&DIST_FROM_LAST_EXON:-553&50_BP_RULE:FAIL&PHYLOCSF_TOO_SHORT,-|frameshift_variant|HIGH|CCR5|ENSG00000160791|Transcript|ENST00000445772|protein_coding|1/1||ENST00000445772.1:c.546delT|ENSP00000404881.1:p.Pro183HisfsTer14|776|543|181|H/X|caT/ca||1||1||deletion|1|HGNC|1606||||CCDS2739.1|ENSP00000404881|P51681|Q9UBT9&Q9P1T4&Q5KSY4&Q5EKN0&Q38L21&J7HJP8&E7BJ57&B8LFP0&B8LFN8&A1A490|UPI000000D955|1|||PROSITE_profiles:PS50262&hmmpanther:PTHR24227:SF45&hmmpanther:PTHR24227&Pfam_domain:PF00001&Gene3D:1.20.1070.10&Superfamily_domains:SSF81321&Prints_domain:PR01110|3||||||||||||||||||||||||||HC||SINGLE_EXON|GERP_DIST:922.109800000004&BP_DIST:516&PERCENTILE:0.512747875354108&DIST_FROM_LAST_EXON:-775&50_BP_RULE:FAIL&PHYLOCSF_TOO_SHORT,-|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-24F11.2|ENSG00000223552|Transcript|ENST00000451485|antisense||2/3|ENST00000451485.1:n.392-2028delA||||||||1||-1||deletion|1|Clone_based_vega_gene||YES||||||||||||||||||||||||||||||||||||||||| |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
601 3 46414943 rs775750898 TACAGTCAGTATCAATTCTGGAAGAATTTCCAG T 74264261.52 PASS AC=18640;AN=251006;AF=7.42612e-02;rf_tp_probability=7.40136e-01;FS=1.76900e+00;InbreedingCoeff=2.78000e-02;MQ=5.34100e+01;MQRankSum=-6.57200e+00;QD=1.49000e+01;ReadPosRankSum=-3.87000e-01;SOR=6.17000e-01;VQSR_POSITIVE_TRAIN_SITE;BaseQRankSum=1.27000e+00;ClippingRankSum=-4.00000e-03;DP=12360054;VQSLOD=1.54000e+00;VQSR_culprit=MQRankSum;segdup;rf_positive_label;rf_label=TP;rf_train;variant_type=mixed;allele_type=del;n_alt_alleles=2;was_mixed;pab_max=1.00000e+00;gq_hist_alt_bin_freq=0|2|3|3|0|1|1|4|4|8|6|4|9|5|14|9|10|13|11|17651;gq_hist_all_bin_freq=35|21|18|41|68|50|96|142|88|187|181|97|371|113|317|193|524|127|739|122337;dp_hist_alt_bin_freq=4|21|30|42|78|135|195|326|396|549|644|740|684|801|667|616|514|449|410|378;dp_hist_alt_n_larger=10079;dp_hist_all_bin_freq=24|119|259|384|577|783|6619|44130|35571|12320|4446|2614|1673|1467|1079|894|716|585|532|480;dp_hist_all_n_larger=10476;ab_hist_alt_bin_freq=0|1|9|46|240|959|2896|6505|4575|1107|318|50|13|6|0|4|0|2|11|42;AC_nfe_seu=765;AN_nfe_seu=11476;AF_nfe_seu=6.66609e-02;nhomalt_nfe_seu=31;controls_AC_afr_male=40;controls_AN_afr_male=2924;controls_AF_afr_male=1.36799e-02;controls_nhomalt_afr_male=1;non_neuro_AC_eas_kor=0;non_neuro_AN_eas_kor=3814;non_neuro_AF_eas_kor=0.00000e+00;non_neuro_nhomalt_eas_kor=0;non_topmed_AC_amr=1012;non_topmed_AN_amr=34446;non_topmed_AF_amr=2.93793e-02;non_topmed_nhomalt_amr=10;non_cancer_AC_asj_female=577;non_cancer_AN_asj_female=4592;non_cancer_AF_asj_female=1.25653e-01;non_cancer_nhomalt_asj_female=43;AC_raw=18732;AN_raw=251490;AF_raw=7.44841e-02;nhomalt_raw=974;AC_fin_female=1378;AN_fin_female=10336;AF_fin_female=1.33320e-01;nhomalt_fin_female=87;non_cancer_AC_oth_female=195;non_cancer_AN_oth_female=2672;non_cancer_AF_oth_female=7.29790e-02;non_cancer_nhomalt_oth_female=10;AC_nfe_bgr=173;AN_nfe_bgr=2670;AF_nfe_bgr=6.47940e-02;nhomalt_nfe_bgr=7;non_neuro_AC_asj_female=393;non_neuro_AN_asj_female=3086;non_neuro_AF_asj_female=1.27349e-01;non_neuro_nhomalt_asj_female=28;AC_sas_male=391;AN_sas_male=23066;AF_sas_male=1.69514e-02;nhomalt_sas_male=5;non_neuro_AC_afr_male=106;non_neuro_AN_afr_male=6162;non_neuro_AF_afr_male=1.72022e-02;non_neuro_nhomalt_afr_male=2;AC_afr_male=107;AN_afr_male=6184;AF_afr_male=1.73027e-02;nhomalt_afr_male=2;AC_afr=311;AN_afr=16196;AF_afr=1.92023e-02;nhomalt_afr=2;controls_AC_nfe_swe=1578;controls_AN_nfe_swe=12810;controls_AF_nfe_swe=1.23185e-01;controls_nhomalt_nfe_swe=78;non_neuro_AC_afr_female=203;non_neuro_AN_afr_female=9996;non_neuro_AF_afr_female=2.03081e-02;non_neuro_nhomalt_afr_female=0;non_topmed_AC_amr_female=568;non_topmed_AN_amr_female=20190;non_topmed_AF_amr_female=2.81327e-02;non_topmed_nhomalt_amr_female=5;non_cancer_AC_female=7819;non_cancer_AN_female=107454;non_cancer_AF_female=7.27660e-02;non_cancer_nhomalt_female=408;non_cancer_AC_nfe_onf=2601;non_cancer_AN_nfe_onf=24572;non_cancer_AF_nfe_onf=1.05852e-01;non_cancer_nhomalt_nfe_onf=132;non_cancer_AC_male=9543;non_cancer_AN_male=129014;non_cancer_AF_male=7.39687e-02;non_cancer_nhomalt_male=504;non_topmed_AC_oth_female=210;non_topmed_AN_oth_female=2870;non_topmed_AF_oth_female=7.31707e-02;non_topmed_nhomalt_oth_female=11;AC_eas_female=0;AN_eas_female=9326;AF_eas_female=0.00000e+00;nhomalt_eas_female=0;non_cancer_AC_sas_female=98;non_cancer_AN_sas_female=7494;non_cancer_AF_sas_female=1.30771e-02;non_cancer_nhomalt_sas_female=0;AC_afr_female=204;AN_afr_female=10012;AF_afr_female=2.03755e-02;nhomalt_afr_female=0;AC_sas=489;AN_sas=30610;AF_sas=1.59752e-02;nhomalt_sas=5;non_neuro_AC_female=6734;non_neuro_AN_female=95514;non_neuro_AF_female=7.05028e-02;non_neuro_nhomalt_female=351;controls_AC_afr=111;controls_AN_afr=7164;controls_AF_afr=1.54941e-02;controls_nhomalt_afr=1;non_neuro_AC_eas_jpn=0;non_neuro_AN_eas_jpn=150;non_neuro_AF_eas_jpn=0.00000e+00;non_neuro_nhomalt_eas_jpn=0;AC_nfe_onf=3264;AN_nfe_onf=30904;AF_nfe_onf=1.05617e-01;nhomalt_nfe_onf=163;non_cancer_AC_amr_male=434;non_cancer_AN_amr_male=14166;non_cancer_AF_amr_male=3.06367e-02;non_cancer_nhomalt_amr_male=5;controls_AC_fin_male=899;controls_AN_fin_male=6890;controls_AF_fin_male=1.30479e-01;controls_nhomalt_fin_male=59;non_neuro_AC_nfe_nwe=4096;non_neuro_AN_nfe_nwe=35318;non_neuro_AF_nfe_nwe=1.15975e-01;non_neuro_nhomalt_nfe_nwe=236;AC_fin_male=1503;AN_fin_male=11244;AF_fin_male=1.33671e-01;nhomalt_fin_male=105;AC_nfe_female=5454;AN_nfe_female=50030;AF_nfe_female=1.09015e-01;nhomalt_nfe_female=293;AC_amr=1014;AN_amr=34580;AF_amr=2.93233e-02;nhomalt_amr=10;non_topmed_AC_nfe_male=6681;non_topmed_AN_nfe_male=62690;non_topmed_AF_nfe_male=1.06572e-01;non_topmed_nhomalt_nfe_male=350;non_neuro_AC_sas=489;non_neuro_AN_sas=30602;non_neuro_AF_sas=1.59793e-02;non_neuro_nhomalt_sas=5;non_cancer_AC_fin_male=1503;non_cancer_AN_fin_male=11240;non_cancer_AF_fin_male=1.33719e-01;non_cancer_nhomalt_fin_male=105;non_cancer_AC_nfe_seu=709;non_cancer_AN_nfe_seu=10584;non_cancer_AF_nfe_seu=6.69879e-02;non_cancer_nhomalt_nfe_seu=28;AC_eas=2;AN_eas=18392;AF_eas=1.08743e-04;nhomalt_eas=0;nhomalt=966;non_neuro_AC_nfe_female=4371;non_neuro_AN_nfe_female=39790;non_neuro_AF_nfe_female=1.09852e-01;non_neuro_nhomalt_nfe_female=241;non_neuro_AC_afr=309;non_neuro_AN_afr=16158;non_neuro_AF_afr=1.91237e-02;non_neuro_nhomalt_afr=2;controls_AC_raw=7712;controls_AN_raw=109408;controls_AF_raw=7.04884e-02;controls_nhomalt_raw=398;non_cancer_AC_eas=0;non_cancer_AN_eas=17690;non_cancer_AF_eas=0.00000e+00;non_cancer_nhomalt_eas=0;non_cancer_AC_amr_female=559;non_cancer_AN_amr_female=20082;non_cancer_AF_amr_female=2.78359e-02;non_cancer_nhomalt_amr_female=5;non_neuro_AC_nfe_swe=1812;non_neuro_AN_nfe_swe=14776;non_neuro_AF_nfe_swe=1.22631e-01;non_neuro_nhomalt_nfe_swe=97;controls_AC_male=4146;controls_AN_male=58070;controls_AF_male=7.13966e-02;controls_nhomalt_male=212;non_topmed_AC_male=10003;non_topmed_AN_male=133316;non_topmed_AF_male=7.50323e-02;non_topmed_nhomalt_male=520;controls_AC_eas_jpn=0;controls_AN_eas_jpn=114;controls_AF_eas_jpn=0.00000e+00;controls_nhomalt_eas_jpn=0;controls_AC_nfe_female=2070;controls_AN_nfe_female=19146;controls_AF_nfe_female=1.08117e-01;controls_nhomalt_nfe_female=111;non_neuro_AC_amr=848;non_neuro_AN_amr=30516;non_neuro_AF_amr=2.77887e-02;non_neuro_nhomalt_amr=9;non_neuro_AC_eas_female=0;non_neuro_AN_eas_female=6840;non_neuro_AF_eas_female=0.00000e+00;non_neuro_nhomalt_eas_female=0;AC_asj_male=682;AN_asj_male=5172;AF_asj_male=1.31864e-01;nhomalt_asj_male=41;controls_AC_nfe_male=2576;controls_AN_nfe_male=23610;controls_AF_nfe_male=1.09106e-01;controls_nhomalt_nfe_male=138;non_neuro_AC_fin=2261;non_neuro_AN_fin=16666;non_neuro_AF_fin=1.35665e-01;non_neuro_nhomalt_fin=155;non_topmed_AC_sas=489;non_topmed_AN_sas=30610;non_topmed_AF_sas=1.59752e-02;non_topmed_nhomalt_sas=5;non_cancer_AC_nfe_female=4823;non_cancer_AN_nfe_female=44172;non_cancer_AF_nfe_female=1.09187e-01;non_cancer_nhomalt_nfe_female=263;AC_oth_female=214;AN_oth_female=2918;AF_oth_female=7.33379e-02;nhomalt_oth_female=11;non_cancer_AC_asj=1236;non_cancer_AN_asj=9560;non_cancer_AF_asj=1.29289e-01;non_cancer_nhomalt_asj=82;AC_nfe_swe=3166;AN_nfe_swe=26128;AF_nfe_swe=1.21173e-01;nhomalt_nfe_swe=167;controls_AC_nfe=4646;controls_AN_nfe=42756;controls_AF_nfe=1.08663e-01;controls_nhomalt_nfe=249;controls_AC_oth_female=75;controls_AN_oth_female=986;controls_AF_oth_female=7.60649e-02;controls_nhomalt_oth_female=5;controls_AC_asj=299;controls_AN_asj=2320;controls_AF_asj=1.28879e-01;controls_nhomalt_asj=13;non_neuro_AC_amr_male=368;non_neuro_AN_amr_male=12252;non_neuro_AF_amr_male=3.00359e-02;non_neuro_nhomalt_amr_male=4;controls_AC_nfe_nwe=1658;controls_AN_nfe_nwe=14442;controls_AF_nfe_nwe=1.14804e-01;controls_nhomalt_nfe_nwe=102;AC_nfe_nwe=4816;AN_nfe_nwe=42042;AF_nfe_nwe=1.14552e-01;nhomalt_nfe_nwe=278;controls_AC_nfe_seu=324;controls_AN_nfe_seu=4760;controls_AF_nfe_seu=6.80672e-02;controls_nhomalt_nfe_seu=13;controls_AC_sas_female=63;controls_AN_sas_female=4214;controls_AF_sas_female=1.49502e-02;controls_nhomalt_sas_female=0;non_neuro_AC_amr_female=480;non_neuro_AN_amr_female=18264;non_neuro_AF_amr_female=2.62812e-02;non_neuro_nhomalt_amr_female=5;non_cancer_AC_eas_jpn=0;non_cancer_AN_eas_jpn=124;non_cancer_AF_eas_jpn=0.00000e+00;non_cancer_nhomalt_eas_jpn=0;non_neuro_AC_nfe_onf=2954;non_neuro_AN_nfe_onf=27774;non_neuro_AF_nfe_onf=1.06358e-01;non_neuro_nhomalt_nfe_onf=153;non_topmed_AC_eas_male=2;non_topmed_AN_eas_male=9062;non_topmed_AF_eas_male=2.20702e-04;non_topmed_nhomalt_eas_male=0;AC_eas_jpn=0;AN_eas_jpn=152;AF_eas_jpn=0.00000e+00;nhomalt_eas_jpn=0;non_cancer_AC_afr_male=90;non_cancer_AN_afr_male=5670;non_cancer_AF_afr_male=1.58730e-02;non_cancer_nhomalt_afr_male=2;non_cancer_AC_afr=282;non_cancer_AN_afr=14842;non_cancer_AF_afr=1.90001e-02;non_cancer_nhomalt_afr=2;controls_AC_amr_female=254;controls_AN_amr_female=10224;controls_AF_amr_female=2.48435e-02;controls_nhomalt_amr_female=1;non_neuro_AC_fin_male=1228;non_neuro_AN_fin_male=9054;non_neuro_AF_fin_male=1.35631e-01;non_neuro_nhomalt_fin_male=85;AC_female=8532;AN_female=115328;AF_female=7.39803e-02;nhomalt_female=441;non_neuro_AC_nfe_bgr=27;non_neuro_AN_nfe_bgr=452;non_neuro_AF_nfe_bgr=5.97345e-02;non_neuro_nhomalt_nfe_bgr=2;non_neuro_AC_oth_male=170;non_neuro_AN_oth_male=2472;non_neuro_AF_oth_male=6.87702e-02;non_neuro_nhomalt_oth_male=9;non_topmed_AC_nfe_est=18;non_topmed_AN_nfe_est=238;non_topmed_AF_nfe_est=7.56303e-02;non_topmed_nhomalt_nfe_est=0;non_topmed_AC_nfe_nwe=4720;non_topmed_AN_nfe_nwe=40928;non_topmed_AF_nfe_nwe=1.15324e-01;non_topmed_nhomalt_nfe_nwe=275;non_topmed_AC_amr_male=444;non_topmed_AN_amr_male=14256;non_topmed_AF_amr_male=3.11448e-02;non_topmed_nhomalt_amr_male=5;non_cancer_AC_amr=993;non_cancer_AN_amr=34248;non_cancer_AF_amr=2.89944e-02;non_cancer_nhomalt_amr=10;non_topmed_AC_nfe_swe=3161;non_topmed_AN_nfe_swe=26066;non_topmed_AF_nfe_swe=1.21269e-01;non_topmed_nhomalt_nfe_swe=167;non_topmed_AC_nfe_onf=3196;non_topmed_AN_nfe_onf=30108;non_topmed_AF_nfe_onf=1.06151e-01;non_topmed_nhomalt_nfe_onf=157;controls_AC_eas_kor=0;controls_AN_eas_kor=1886;controls_AF_eas_kor=0.00000e+00;controls_nhomalt_eas_kor=0;non_topmed_AC_eas_oea=2;non_topmed_AN_eas_oea=14420;non_topmed_AF_eas_oea=1.38696e-04;non_topmed_nhomalt_eas_oea=0;controls_AC_eas_male=0;controls_AN_eas_male=4258;controls_AF_eas_male=0.00000e+00;controls_nhomalt_eas_male=0;controls_AC_oth_male=64;controls_AN_oth_male=928;controls_AF_oth_male=6.89655e-02;controls_nhomalt_oth_male=4;non_topmed_AC=18352;non_topmed_AN=244418;non_topmed_AF=7.50845e-02;non_topmed_nhomalt=954;controls_AC_fin=1741;controls_AN_fin=13326;controls_AF_fin=1.30647e-01;controls_nhomalt_fin=117;AC_eas_kor=0;AN_eas_kor=3816;AF_eas_kor=0.00000e+00;nhomalt_eas_kor=0;non_neuro_AC_nfe=9628;non_neuro_AN_nfe=89466;non_neuro_AF_nfe=1.07616e-01;non_neuro_nhomalt_nfe=515;non_neuro_AC_fin_female=1033;non_neuro_AN_fin_female=7612;non_neuro_AF_fin_female=1.35707e-01;non_neuro_nhomalt_fin_female=70;non_cancer_AC_nfe_male=6256;non_cancer_AN_nfe_male=58274;non_cancer_AF_nfe_male=1.07355e-01;non_cancer_nhomalt_nfe_male=334;controls_AC_eas_oea=0;controls_AN_eas_oea=7044;controls_AF_eas_oea=0.00000e+00;controls_nhomalt_eas_oea=0;non_topmed_AC_nfe_seu=761;non_topmed_AN_nfe_seu=11382;non_topmed_AF_nfe_seu=6.68600e-02;non_topmed_nhomalt_nfe_seu=31;controls_AC_eas_female=0;controls_AN_eas_female=4786;controls_AF_eas_female=0.00000e+00;controls_nhomalt_eas_female=0;non_topmed_AC_asj=1289;non_topmed_AN_asj=9986;non_topmed_AF_asj=1.29081e-01;non_topmed_nhomalt_asj=85;controls_AC_nfe_onf=1032;controls_AN_nfe_onf=9996;controls_AF_nfe_onf=1.03241e-01;controls_nhomalt_nfe_onf=51;non_neuro_AC=14661;non_neuro_AN=207888;non_neuro_AF=7.05236e-02;non_neuro_nhomalt=750;AC_eas_oea=2;AN_eas_oea=14424;AF_eas_oea=1.38658e-04;nhomalt_eas_oea=0;non_topmed_AC_nfe=12028;non_topmed_AN_nfe=111384;non_topmed_AF_nfe=1.07987e-01;non_topmed_nhomalt_nfe=637;non_cancer_AC_oth=406;non_cancer_AN_oth=5598;non_cancer_AF_oth=7.25259e-02;non_cancer_nhomalt_oth=24;non_topmed_AC_raw=18438;non_topmed_AN_raw=244872;non_topmed_AF_raw=7.52965e-02;non_topmed_nhomalt_raw=962;non_neuro_AC_nfe_est=17;non_neuro_AN_nfe_est=216;non_neuro_AF_nfe_est=7.87037e-02;non_neuro_nhomalt_nfe_est=0;non_topmed_AC_oth_male=225;non_topmed_AN_oth_male=3176;non_topmed_AF_oth_male=7.08438e-02;non_topmed_nhomalt_oth_male=13;non_cancer_AC_oth_male=211;non_cancer_AN_oth_male=2926;non_cancer_AF_oth_male=7.21121e-02;non_cancer_nhomalt_oth_male=14;AC_nfe_est=19;AN_nfe_est=242;AF_nfe_est=7.85124e-02;nhomalt_nfe_est=0;non_cancer_AC_afr_female=192;non_cancer_AN_afr_female=9172;non_cancer_AF_afr_female=2.09333e-02;non_cancer_nhomalt_afr_female=0;non_topmed_AC_afr_male=78;non_topmed_AN_afr_male=4686;non_topmed_AF_afr_male=1.66453e-02;non_topmed_nhomalt_afr_male=1;AC_eas_male=2;AN_eas_male=9066;AF_eas_male=2.20604e-04;nhomalt_eas_male=0;controls_AC_eas=0;controls_AN_eas=9044;controls_AF_eas=0.00000e+00;controls_nhomalt_eas=0;non_neuro_AC_eas_male=2;non_neuro_AN_eas_male=6574;non_neuro_AF_eas_male=3.04229e-04;non_neuro_nhomalt_eas_male=0;non_cancer_AC_nfe_nwe=4512;non_cancer_AN_nfe_nwe=39322;non_cancer_AF_nfe_nwe=1.14745e-01;non_cancer_nhomalt_nfe_nwe=266;controls_AC_sas=257;controls_AN_sas=15686;controls_AF_sas=1.63840e-02;controls_nhomalt_sas=4;non_neuro_AC_sas_male=391;non_neuro_AN_sas_male=23060;non_neuro_AF_sas_male=1.69558e-02;non_neuro_nhomalt_sas_male=5;non_neuro_AC_asj_male=405;non_neuro_AN_asj_male=3124;non_neuro_AF_asj_male=1.29641e-01;non_neuro_nhomalt_asj_male=20;non_cancer_AC_nfe_bgr=166;non_cancer_AN_nfe_bgr=2526;non_cancer_AF_nfe_bgr=6.57165e-02;non_cancer_nhomalt_nfe_bgr=7;controls_AC_oth=139;controls_AN_oth=1914;controls_AF_oth=7.26228e-02;controls_nhomalt_oth=9;non_cancer_AC_eas_female=0;non_cancer_AN_eas_female=8946;non_cancer_AF_eas_female=0.00000e+00;non_cancer_nhomalt_eas_female=0;AC_nfe=12203;AN_nfe=113462;AF_nfe=1.07551e-01;nhomalt_nfe=646;non_topmed_AC_female=8349;non_topmed_AN_female=111102;non_topmed_AF_female=7.51472e-02;non_topmed_nhomalt_female=434;non_neuro_AC_asj=798;non_neuro_AN_asj=6210;non_neuro_AF_asj=1.28502e-01;non_neuro_nhomalt_asj=48;non_topmed_AC_eas_female=0;non_topmed_AN_eas_female=9326;non_topmed_AF_eas_female=0.00000e+00;non_topmed_nhomalt_eas_female=0;non_neuro_AC_raw=14725;non_neuro_AN_raw=208132;non_neuro_AF_raw=7.07484e-02;non_neuro_nhomalt_raw=754;non_topmed_AC_eas=2;non_topmed_AN_eas=18388;non_topmed_AF_eas=1.08767e-04;non_topmed_nhomalt_eas=0;non_topmed_AC_fin_male=1503;non_topmed_AN_fin_male=11244;non_topmed_AF_fin_male=1.33671e-01;non_topmed_nhomalt_fin_male=105;non_cancer_AC_asj_male=659;non_cancer_AN_asj_male=4968;non_cancer_AF_asj_male=1.32649e-01;non_cancer_nhomalt_asj_male=39;AC_fin=2881;AN_fin=21580;AF_fin=1.33503e-01;nhomalt_fin=192;AC_nfe_male=6749;AN_nfe_male=63432;AF_nfe_male=1.06397e-01;nhomalt_nfe_male=353;non_topmed_AC_eas_kor=0;non_topmed_AN_eas_kor=3816;non_topmed_AF_eas_kor=0.00000e+00;non_topmed_nhomalt_eas_kor=0;controls_AC_amr_male=222;controls_AN_amr_male=6882;controls_AF_amr_male=3.22581e-02;controls_nhomalt_amr_male=1;non_neuro_AC_eas_oea=2;non_neuro_AN_eas_oea=9450;non_neuro_AF_eas_oea=2.11640e-04;non_neuro_nhomalt_eas_oea=0;AC_sas_female=98;AN_sas_female=7544;AF_sas_female=1.29905e-02;nhomalt_sas_female=0;controls_AC_afr_female=71;controls_AN_afr_female=4240;controls_AF_afr_female=1.67453e-02;controls_nhomalt_afr_female=0;controls_AC_amr=476;controls_AN_amr=17106;controls_AF_amr=2.78265e-02;controls_nhomalt_amr=2;non_topmed_AC_eas_jpn=0;non_topmed_AN_eas_jpn=152;non_topmed_AF_eas_jpn=0.00000e+00;non_topmed_nhomalt_eas_jpn=0;AC_asj_female=614;AN_asj_female=4896;AF_asj_female=1.25408e-01;nhomalt_asj_female=45;non_topmed_AC_nfe_bgr=172;non_topmed_AN_nfe_bgr=2662;non_topmed_AF_nfe_bgr=6.46131e-02;non_topmed_nhomalt_nfe_bgr=7;non_cancer_AC_nfe_est=11;non_cancer_AN_nfe_est=158;non_cancer_AF_nfe_est=6.96203e-02;non_cancer_nhomalt_nfe_est=0;non_neuro_AC_eas=2;non_neuro_AN_eas=13414;non_neuro_AF_eas=1.49098e-04;non_neuro_nhomalt_eas=0;non_cancer_AC_nfe=11079;non_cancer_AN_nfe=102446;non_cancer_AF_nfe=1.08145e-01;non_cancer_nhomalt_nfe=597;non_neuro_AC_male=7927;non_neuro_AN_male=112374;non_neuro_AF_male=7.05412e-02;non_neuro_nhomalt_male=399;non_neuro_AC_sas_female=98;non_neuro_AN_sas_female=7542;non_neuro_AF_sas_female=1.29939e-02;non_neuro_nhomalt_sas_female=0;AC_asj=1296;AN_asj=10068;AF_asj=1.28725e-01;nhomalt_asj=86;controls_AC_nfe_est=7;controls_AN_nfe_est=70;controls_AF_nfe_est=1.00000e-01;controls_nhomalt_nfe_est=0;non_topmed_AC_asj_female=610;non_topmed_AN_asj_female=4850;non_topmed_AF_asj_female=1.25773e-01;non_topmed_nhomalt_asj_female=44;non_cancer_AC_nfe_swe=3080;non_cancer_AN_nfe_swe=25284;non_cancer_AF_nfe_swe=1.21816e-01;non_cancer_nhomalt_nfe_swe=164;non_cancer_AC=17362;non_cancer_AN=236468;non_cancer_AF=7.34222e-02;non_cancer_nhomalt=912;non_topmed_AC_oth=435;non_topmed_AN_oth=6046;non_topmed_AF_oth=7.19484e-02;non_topmed_nhomalt_oth=24;non_topmed_AC_fin_female=1378;non_topmed_AN_fin_female=10334;non_topmed_AF_fin_female=1.33346e-01;non_topmed_nhomalt_fin_female=87;non_cancer_AC_fin_female=1375;non_cancer_AN_fin_female=10324;non_cancer_AF_fin_female=1.33185e-01;non_cancer_nhomalt_fin_female=87;AC_oth=444;AN_oth=6118;AF_oth=7.25727e-02;nhomalt_oth=25;non_neuro_AC_nfe_male=5257;non_neuro_AN_nfe_male=49676;non_neuro_AF_nfe_male=1.05826e-01;non_neuro_nhomalt_nfe_male=274;controls_AC_female=3523;controls_AN_female=51246;controls_AF_female=6.87468e-02;controls_nhomalt_female=183;non_cancer_AC_fin=2878;non_cancer_AN_fin=21564;non_cancer_AF_fin=1.33463e-01;non_cancer_nhomalt_fin=192;non_topmed_AC_fin=2881;non_topmed_AN_fin=21578;non_topmed_AF_fin=1.33516e-01;non_topmed_nhomalt_fin=192;non_cancer_AC_eas_oea=0;non_cancer_AN_eas_oea=13794;non_cancer_AF_eas_oea=0.00000e+00;non_cancer_nhomalt_eas_oea=0;non_topmed_AC_nfe_female=5347;non_topmed_AN_nfe_female=48694;non_topmed_AF_nfe_female=1.09808e-01;non_topmed_nhomalt_nfe_female=287;non_cancer_AC_sas_male=390;non_cancer_AN_sas_male=23026;non_cancer_AF_sas_male=1.69374e-02;non_cancer_nhomalt_sas_male=5;controls_AC_asj_male=151;controls_AN_asj_male=1106;controls_AF_asj_male=1.36528e-01;controls_nhomalt_asj_male=5;non_cancer_AC_raw=17454;non_cancer_AN_raw=236952;non_cancer_AF_raw=7.36605e-02;non_cancer_nhomalt_raw=920;non_cancer_AC_eas_male=0;non_cancer_AN_eas_male=8744;non_cancer_AF_eas_male=0.00000e+00;non_cancer_nhomalt_eas_male=0;non_topmed_AC_asj_male=679;non_topmed_AN_asj_male=5136;non_topmed_AF_asj_male=1.32204e-01;non_topmed_nhomalt_asj_male=41;non_neuro_AC_oth=326;non_neuro_AN_oth=4856;non_neuro_AF_oth=6.71334e-02;non_neuro_nhomalt_oth=16;AC_male=10108;AN_male=135678;AF_male=7.44999e-02;nhomalt_male=525;controls_AC_fin_female=842;controls_AN_fin_female=6436;controls_AF_fin_female=1.30827e-01;controls_nhomalt_fin_female=58;controls_AC_nfe_bgr=47;controls_AN_nfe_bgr=678;controls_AF_nfe_bgr=6.93215e-02;controls_nhomalt_nfe_bgr=5;controls_AC_asj_female=148;controls_AN_asj_female=1214;controls_AF_asj_female=1.21911e-01;controls_nhomalt_asj_female=8;AC_amr_male=444;AN_amr_male=14314;AF_amr_male=3.10186e-02;nhomalt_amr_male=5;AC_amr_female=570;AN_amr_female=20266;AF_amr_female=2.81259e-02;nhomalt_amr_female=5;non_topmed_AC_sas_male=391;non_topmed_AN_sas_male=23066;non_topmed_AF_sas_male=1.69514e-02;non_topmed_nhomalt_sas_male=5;AC_oth_male=230;AN_oth_male=3200;AF_oth_male=7.18750e-02;nhomalt_oth_male=14;non_cancer_AC_sas=488;non_cancer_AN_sas=30520;non_cancer_AF_sas=1.59895e-02;non_cancer_nhomalt_sas=5;non_neuro_AC_nfe_seu=722;non_neuro_AN_nfe_seu=10930;non_neuro_AF_nfe_seu=6.60567e-02;non_neuro_nhomalt_nfe_seu=27;non_cancer_AC_eas_kor=0;non_cancer_AN_eas_kor=3772;non_cancer_AF_eas_kor=0.00000e+00;non_cancer_nhomalt_eas_kor=0;non_topmed_AC_afr_female=138;non_topmed_AN_afr_female=7294;non_topmed_AF_afr_female=1.89197e-02;non_topmed_nhomalt_afr_female=0;controls_AC_sas_male=194;controls_AN_sas_male=11472;controls_AF_sas_male=1.69107e-02;controls_nhomalt_sas_male=4;non_topmed_AC_sas_female=98;non_topmed_AN_sas_female=7544;non_topmed_AF_sas_female=1.29905e-02;non_topmed_nhomalt_sas_female=0;non_topmed_AC_afr=216;non_topmed_AN_afr=11980;non_topmed_AF_afr=1.80301e-02;non_topmed_nhomalt_afr=1;controls_AC=7669;controls_AN=109316;controls_AF=7.01544e-02;controls_nhomalt=395;non_neuro_AC_oth_female=156;non_neuro_AN_oth_female=2384;non_neuro_AF_oth_female=6.54362e-02;non_neuro_nhomalt_oth_female=7;non_topmed_faf95_amr=2.78769e-02;non_topmed_faf99_amr=2.78761e-02;faf95_afr=1.74470e-02;faf99_afr=1.74462e-02;faf95_sas=1.48048e-02;faf99_sas=1.48054e-02;controls_faf95_afr=1.31569e-02;controls_faf99_afr=1.31561e-02;faf95_amr=2.78245e-02;faf99_amr=2.78245e-02;non_neuro_faf95_sas=1.48086e-02;non_neuro_faf99_sas=1.48091e-02;faf95_eas=1.89700e-05;faf99_eas=1.87100e-05;faf95=7.33687e-02;faf99=7.33685e-02;non_neuro_faf95_afr=1.73698e-02;non_neuro_faf99_afr=1.73699e-02;non_cancer_faf95_eas=0.00000e+00;non_cancer_faf99_eas=0.00000e+00;non_neuro_faf95_amr=2.62377e-02;non_neuro_faf99_amr=2.62373e-02;non_topmed_faf95_sas=1.48048e-02;non_topmed_faf99_sas=1.48054e-02;controls_faf95_nfe=1.06054e-01;controls_faf99_nfe=1.06054e-01;non_cancer_faf95_afr=1.71776e-02;non_cancer_faf99_afr=1.71775e-02;non_cancer_faf95_amr=2.74972e-02;non_cancer_faf99_amr=2.74971e-02;non_topmed_faf95=7.41745e-02;non_topmed_faf99=7.41745e-02;non_neuro_faf95_nfe=1.05818e-01;non_neuro_faf99_nfe=1.05818e-01;non_neuro_faf95=6.95677e-02;non_neuro_faf99=6.95678e-02;non_topmed_faf95_nfe=1.06372e-01;non_topmed_faf99_nfe=1.06372e-01;controls_faf95_eas=0.00000e+00;controls_faf99_eas=0.00000e+00;controls_faf95_sas=1.47398e-02;controls_faf99_sas=1.47392e-02;faf95_nfe=1.05955e-01;faf99_nfe=1.05954e-01;non_topmed_faf95_eas=1.89700e-05;non_topmed_faf99_eas=1.87200e-05;controls_faf95_amr=2.57616e-02;controls_faf99_amr=2.57616e-02;non_neuro_faf95_eas=2.56000e-05;non_neuro_faf99_eas=2.61900e-05;non_cancer_faf95_nfe=1.06459e-01;non_cancer_faf99_nfe=1.06460e-01;non_cancer_faf95=7.25077e-02;non_cancer_faf99=7.25074e-02;non_cancer_faf95_sas=1.48178e-02;non_cancer_faf99_sas=1.48178e-02;non_topmed_faf95_afr=1.60601e-02;non_topmed_faf99_afr=1.60602e-02;controls_faf95=6.88418e-02;controls_faf99=6.88419e-02;popmax=nfe;AC_popmax=12203;AN_popmax=113462;AF_popmax=1.07551e-01;nhomalt_popmax=646;age_hist_het_bin_freq=538|568|947|1020|1303|1317|1252|1208|802|575;age_hist_het_n_smaller=340;age_hist_het_n_larger=336;age_hist_hom_bin_freq=24|28|31|65|67|77|76|64|53|34;age_hist_hom_n_smaller=14;age_hist_hom_n_larger=17;non_topmed_popmax=nfe;non_topmed_AC_popmax=12028;non_topmed_AN_popmax=111384;non_topmed_AF_popmax=1.07987e-01;non_topmed_nhomalt_popmax=637;non_neuro_popmax=nfe;non_neuro_AC_popmax=9628;non_neuro_AN_popmax=89466;non_neuro_AF_popmax=1.07616e-01;non_neuro_nhomalt_popmax=515;non_cancer_popmax=nfe;non_cancer_AC_popmax=11079;non_cancer_AN_popmax=102446;non_cancer_AF_popmax=1.08145e-01;non_cancer_nhomalt_popmax=597;controls_popmax=nfe;controls_AC_popmax=4646;controls_AN_popmax=42756;controls_AF_popmax=1.08663e-01;controls_nhomalt_popmax=249;vep=-|frameshift_variant|HIGH|CCR5|ENSG00000160791|Transcript|ENST00000292303|protein_coding|2/2||ENST00000292303.4:c.554_585delGTCAGTATCAATTCTGGAAGAATTTCCAGACA|ENSP00000292303.4:p.Ser185IlefsTer32|697-728|551-582|184-194|YSQYQFWKNFQ/X|tACAGTCAGTATCAATTCTGGAAGAATTTCCAG/t|rs562091107&COSM1423390|1||1||deletion|1|HGNC|1606||||CCDS2739.1|ENSP00000292303|P51681|Q9UBT9&Q9P1T4&Q5KSY4&Q5EKN0&Q38L21&J7HJP8&E7BJ57&B8LFP0&B8LFN8&A1A490|UPI000000D955|1|||Prints_domain:PR01110&Prints_domain:PR01110&Superfamily_domains:SSF81321&Gene3D:1.20.1070.10&Pfam_domain:PF00001&hmmpanther:PTHR24227&hmmpanther:PTHR24227:SF45&PROSITE_profiles:PS50262|3|-:0.0292||-:0.003|-:0.0317|-:0|-:0.1103|-:0.0092|-:0.0136|-:0.0847||||||||||0&1|0&1||||||HC|||GERP_DIST:923.849800000004&BP_DIST:508&PERCENTILE:0.54957507082153&DIST_FROM_LAST_EXON:-561&50_BP_RULE:FAIL&PHYLOCSF_TOO_SHORT,-|frameshift_variant|HIGH|CCR5|ENSG00000160791|Transcript|ENST00000343801|protein_coding|3/3||ENST00000343801.4:c.554_585delGTCAGTATCAATTCTGGAAGAATTTCCAGACA|ENSP00000343985.4:p.Ser185IlefsTer32|908-939|551-582|184-194|YSQYQFWKNFQ/X|tACAGTCAGTATCAATTCTGGAAGAATTTCCAG/t|rs562091107&COSM1423390|1||1||deletion|1|HGNC|1606|YES|||CCDS2739.1|ENSP00000343985|P51681|Q9UBT9&Q9P1T4&Q5KSY4&Q5EKN0&Q38L21&J7HJP8&E7BJ57&B8LFP0&B8LFN8&A1A490|UPI000000D955|1|||PROSITE_profiles:PS50262&hmmpanther:PTHR24227:SF45&hmmpanther:PTHR24227&Gene3D:1.20.1070.10&Pfam_domain:PF00001&Superfamily_domains:SSF81321&Prints_domain:PR01110&Prints_domain:PR01110|3|-:0.0292||-:0.003|-:0.0317|-:0|-:0.1103|-:0.0092|-:0.0136|-:0.0847||||||||||0&1|0&1||||||HC|||GERP_DIST:923.849800000004&BP_DIST:508&PERCENTILE:0.54957507082153&DIST_FROM_LAST_EXON:-561&50_BP_RULE:FAIL&PHYLOCSF_TOO_SHORT,-|frameshift_variant|HIGH|CCR5|ENSG00000160791|Transcript|ENST00000445772|protein_coding|1/1||ENST00000445772.1:c.554_585delGTCAGTATCAATTCTGGAAGAATTTCCAGACA|ENSP00000404881.1:p.Ser185IlefsTer32|784-815|551-582|184-194|YSQYQFWKNFQ/X|tACAGTCAGTATCAATTCTGGAAGAATTTCCAG/t|rs562091107&COSM1423390|1||1||deletion|1|HGNC|1606||||CCDS2739.1|ENSP00000404881|P51681|Q9UBT9&Q9P1T4&Q5KSY4&Q5EKN0&Q38L21&J7HJP8&E7BJ57&B8LFP0&B8LFN8&A1A490|UPI000000D955|1|||PROSITE_profiles:PS50262&hmmpanther:PTHR24227:SF45&hmmpanther:PTHR24227&Pfam_domain:PF00001&Gene3D:1.20.1070.10&Superfamily_domains:SSF81321&Prints_domain:PR01110&Prints_domain:PR01110|3|-:0.0292||-:0.003|-:0.0317|-:0|-:0.1103|-:0.0092|-:0.0136|-:0.0847||||||||||0&1|0&1||||||HC||SINGLE_EXON|GERP_DIST:923.849800000004&BP_DIST:508&PERCENTILE:0.54957507082153&DIST_FROM_LAST_EXON:-783&50_BP_RULE:FAIL&PHYLOCSF_TOO_SHORT,-|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-24F11.2|ENSG00000223552|Transcript|ENST00000451485|antisense||2/3|ENST00000451485.1:n.392-2067_392-2036delCTGGAAATTCTTCCAGAATTGATACTGACTGT|||||||rs562091107&COSM1423390|1||-1||deletion|1|Clone_based_vega_gene||YES|||||||||||||-:0.0292||-:0.003|-:0.0317|-:0|-:0.1103|-:0.0092|-:0.0136|-:0.0847||||||||||0&1|0&1||||||||| |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
602 3 46415066 rs146972949 C T 120238.89 PASS AC=34;AN=250848;AF=1.35540e-04;rf_tp_probability=5.71787e-01;FS=0.00000e+00;InbreedingCoeff=2.70000e-02;MQ=5.96200e+01;MQRankSum=4.44000e-01;QD=1.41100e+01;ReadPosRankSum=6.86000e-01;SOR=6.72000e-01;BaseQRankSum=1.19000e+00;ClippingRankSum=5.40000e-02;DP=7944597;VQSLOD=4.98000e+00;VQSR_culprit=FS;segdup;variant_type=snv;allele_type=snv;n_alt_alleles=1;pab_max=1.00000e+00;gq_hist_alt_bin_freq=0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|33;gq_hist_all_bin_freq=75|33|37|87|171|158|463|783|639|1574|2076|1396|5239|1099|4118|1503|4855|520|4327|96594;dp_hist_alt_bin_freq=0|0|0|1|0|1|1|0|1|0|2|0|0|0|1|1|1|2|3|1;dp_hist_alt_n_larger=18;dp_hist_all_bin_freq=27|162|825|2720|6977|7997|12060|37575|33207|13569|4666|2275|1179|781|457|305|215|140|119|89;dp_hist_all_n_larger=403;ab_hist_alt_bin_freq=0|0|0|0|0|0|1|1|6|10|12|1|1|0|0|0|0|0|0|0;AC_nfe_seu=0;AN_nfe_seu=11474;AF_nfe_seu=0.00000e+00;nhomalt_nfe_seu=0;controls_AC_afr_male=2;controls_AN_afr_male=2924;controls_AF_afr_male=6.83995e-04;controls_nhomalt_afr_male=0;non_neuro_AC_eas_kor=0;non_neuro_AN_eas_kor=3808;non_neuro_AF_eas_kor=0.00000e+00;non_neuro_nhomalt_eas_kor=0;non_topmed_AC_amr=3;non_topmed_AN_amr=34382;non_topmed_AF_amr=8.72550e-05;non_topmed_nhomalt_amr=0;non_cancer_AC_asj_female=0;non_cancer_AN_asj_female=4572;non_cancer_AF_asj_female=0.00000e+00;non_cancer_nhomalt_asj_female=0;AC_raw=34;AN_raw=251494;AF_raw=1.35192e-04;nhomalt_raw=1;AC_fin_female=0;AN_fin_female=10338;AF_fin_female=0.00000e+00;nhomalt_fin_female=0;non_cancer_AC_oth_female=0;non_cancer_AN_oth_female=2676;non_cancer_AF_oth_female=0.00000e+00;non_cancer_nhomalt_oth_female=0;AC_nfe_bgr=0;AN_nfe_bgr=2668;AF_nfe_bgr=0.00000e+00;nhomalt_nfe_bgr=0;non_neuro_AC_asj_female=0;non_neuro_AN_asj_female=3068;non_neuro_AF_asj_female=0.00000e+00;non_neuro_nhomalt_asj_female=0;AC_sas_male=0;AN_sas_male=23036;AF_sas_male=0.00000e+00;nhomalt_sas_male=0;non_neuro_AC_afr_male=10;non_neuro_AN_afr_male=6164;non_neuro_AF_afr_male=1.62232e-03;non_neuro_nhomalt_afr_male=0;AC_afr_male=10;AN_afr_male=6186;AF_afr_male=1.61655e-03;nhomalt_afr_male=0;AC_afr=23;AN_afr=16252;AF_afr=1.41521e-03;nhomalt_afr=0;controls_AC_nfe_swe=2;controls_AN_nfe_swe=12802;controls_AF_nfe_swe=1.56226e-04;controls_nhomalt_nfe_swe=1;non_neuro_AC_afr_female=13;non_neuro_AN_afr_female=10050;non_neuro_AF_afr_female=1.29353e-03;non_neuro_nhomalt_afr_female=0;non_topmed_AC_amr_female=3;non_topmed_AN_amr_female=20150;non_topmed_AF_amr_female=1.48883e-04;non_topmed_nhomalt_amr_female=0;non_cancer_AC_female=18;non_cancer_AN_female=107406;non_cancer_AF_female=1.67588e-04;non_cancer_nhomalt_female=1;non_cancer_AC_nfe_onf=2;non_cancer_AN_nfe_onf=24546;non_cancer_AF_nfe_onf=8.14797e-05;non_cancer_nhomalt_nfe_onf=0;non_cancer_AC_male=13;non_cancer_AN_male=128906;non_cancer_AF_male=1.00849e-04;non_cancer_nhomalt_male=0;non_topmed_AC_oth_female=0;non_topmed_AN_oth_female=2872;non_topmed_AF_oth_female=0.00000e+00;non_topmed_nhomalt_oth_female=0;AC_eas_female=0;AN_eas_female=9324;AF_eas_female=0.00000e+00;nhomalt_eas_female=0;non_cancer_AC_sas_female=0;non_cancer_AN_sas_female=7480;non_cancer_AF_sas_female=0.00000e+00;non_cancer_nhomalt_sas_female=0;AC_afr_female=13;AN_afr_female=10066;AF_afr_female=1.29148e-03;nhomalt_afr_female=0;AC_sas=0;AN_sas=30566;AF_sas=0.00000e+00;nhomalt_sas=0;non_neuro_AC_female=20;non_neuro_AN_female=95468;non_neuro_AF_female=2.09494e-04;non_neuro_nhomalt_female=1;controls_AC_afr=9;controls_AN_afr=7164;controls_AF_afr=1.25628e-03;controls_nhomalt_afr=0;non_neuro_AC_eas_jpn=0;non_neuro_AN_eas_jpn=150;non_neuro_AF_eas_jpn=0.00000e+00;non_neuro_nhomalt_eas_jpn=0;AC_nfe_onf=2;AN_nfe_onf=30878;AF_nfe_onf=6.47710e-05;nhomalt_nfe_onf=0;non_cancer_AC_amr_male=0;non_cancer_AN_amr_male=14142;non_cancer_AF_amr_male=0.00000e+00;non_cancer_nhomalt_amr_male=0;controls_AC_fin_male=0;controls_AN_fin_male=6914;controls_AF_fin_male=0.00000e+00;controls_nhomalt_fin_male=0;non_neuro_AC_nfe_nwe=3;non_neuro_AN_nfe_nwe=35264;non_neuro_AF_nfe_nwe=8.50726e-05;non_neuro_nhomalt_nfe_nwe=0;AC_fin_male=0;AN_fin_male=11252;AF_fin_male=0.00000e+00;nhomalt_fin_male=0;AC_nfe_female=4;AN_nfe_female=49998;AF_nfe_female=8.00032e-05;nhomalt_nfe_female=1;AC_amr=3;AN_amr=34516;AF_amr=8.69162e-05;nhomalt_amr=0;non_topmed_AC_nfe_male=4;non_topmed_AN_nfe_male=62676;non_topmed_AF_nfe_male=6.38203e-05;non_topmed_nhomalt_nfe_male=0;non_neuro_AC_sas=0;non_neuro_AN_sas=30558;non_neuro_AF_sas=0.00000e+00;non_neuro_nhomalt_sas=0;non_cancer_AC_fin_male=0;non_cancer_AN_fin_male=11248;non_cancer_AF_fin_male=0.00000e+00;non_cancer_nhomalt_fin_male=0;non_cancer_AC_nfe_seu=0;non_cancer_AN_nfe_seu=10582;non_cancer_AF_nfe_seu=0.00000e+00;non_cancer_nhomalt_nfe_seu=0;AC_eas=0;AN_eas=18382;AF_eas=0.00000e+00;nhomalt_eas=0;nhomalt=1;non_neuro_AC_nfe_female=4;non_neuro_AN_nfe_female=39730;non_neuro_AF_nfe_female=1.00680e-04;non_neuro_nhomalt_nfe_female=1;non_neuro_AC_afr=23;non_neuro_AN_afr=16214;non_neuro_AF_afr=1.41853e-03;non_neuro_nhomalt_afr=0;controls_AC_raw=14;controls_AN_raw=109408;controls_AF_raw=1.27961e-04;controls_nhomalt_raw=1;non_cancer_AC_eas=0;non_cancer_AN_eas=17682;non_cancer_AF_eas=0.00000e+00;non_cancer_nhomalt_eas=0;non_cancer_AC_amr_female=3;non_cancer_AN_amr_female=20042;non_cancer_AF_amr_female=1.49686e-04;non_cancer_nhomalt_amr_female=0;non_neuro_AC_nfe_swe=2;non_neuro_AN_nfe_swe=14768;non_neuro_AF_nfe_swe=1.35428e-04;non_neuro_nhomalt_nfe_swe=1;controls_AC_male=3;controls_AN_male=58020;controls_AF_male=5.17063e-05;controls_nhomalt_male=0;non_topmed_AC_male=13;non_topmed_AN_male=133200;non_topmed_AF_male=9.75976e-05;non_topmed_nhomalt_male=0;controls_AC_eas_jpn=0;controls_AN_eas_jpn=114;controls_AF_eas_jpn=0.00000e+00;controls_nhomalt_eas_jpn=0;controls_AC_nfe_female=2;controls_AN_nfe_female=19108;controls_AF_nfe_female=1.04668e-04;controls_nhomalt_nfe_female=1;non_neuro_AC_amr=3;non_neuro_AN_amr=30450;non_neuro_AF_amr=9.85222e-05;non_neuro_nhomalt_amr=0;non_neuro_AC_eas_female=0;non_neuro_AN_eas_female=6840;non_neuro_AF_eas_female=0.00000e+00;non_neuro_nhomalt_eas_female=0;AC_asj_male=0;AN_asj_male=5140;AF_asj_male=0.00000e+00;nhomalt_asj_male=0;controls_AC_nfe_male=1;controls_AN_nfe_male=23584;controls_AF_nfe_male=4.24016e-05;controls_nhomalt_nfe_male=0;non_neuro_AC_fin=0;non_neuro_AN_fin=16722;non_neuro_AF_fin=0.00000e+00;non_neuro_nhomalt_fin=0;non_topmed_AC_sas=0;non_topmed_AN_sas=30566;non_topmed_AF_sas=0.00000e+00;non_topmed_nhomalt_sas=0;non_cancer_AC_nfe_female=4;non_cancer_AN_nfe_female=44140;non_cancer_AF_nfe_female=9.06208e-05;non_cancer_nhomalt_nfe_female=1;AC_oth_female=0;AN_oth_female=2922;AF_oth_female=0.00000e+00;nhomalt_oth_female=0;non_cancer_AC_asj=0;non_cancer_AN_asj=9508;non_cancer_AF_asj=0.00000e+00;non_cancer_nhomalt_asj=0;AC_nfe_swe=2;AN_nfe_swe=26120;AF_nfe_swe=7.65697e-05;nhomalt_nfe_swe=1;controls_AC_nfe=3;controls_AN_nfe=42692;controls_AF_nfe=7.02708e-05;controls_nhomalt_nfe=1;controls_AC_oth_female=0;controls_AN_oth_female=986;controls_AF_oth_female=0.00000e+00;controls_nhomalt_oth_female=0;controls_AC_asj=0;controls_AN_asj=2302;controls_AF_asj=0.00000e+00;controls_nhomalt_asj=0;non_neuro_AC_amr_male=0;non_neuro_AN_amr_male=12228;non_neuro_AF_amr_male=0.00000e+00;non_neuro_nhomalt_amr_male=0;controls_AC_nfe_nwe=0;controls_AN_nfe_nwe=14410;controls_AF_nfe_nwe=0.00000e+00;controls_nhomalt_nfe_nwe=0;AC_nfe_nwe=4;AN_nfe_nwe=42036;AF_nfe_nwe=9.51565e-05;nhomalt_nfe_nwe=0;controls_AC_nfe_seu=0;controls_AN_nfe_seu=4758;controls_AF_nfe_seu=0.00000e+00;controls_nhomalt_nfe_seu=0;controls_AC_sas_female=0;controls_AN_sas_female=4208;controls_AF_sas_female=0.00000e+00;controls_nhomalt_sas_female=0;non_neuro_AC_amr_female=3;non_neuro_AN_amr_female=18222;non_neuro_AF_amr_female=1.64636e-04;non_neuro_nhomalt_amr_female=0;non_cancer_AC_eas_jpn=0;non_cancer_AN_eas_jpn=124;non_cancer_AF_eas_jpn=0.00000e+00;non_cancer_nhomalt_eas_jpn=0;non_neuro_AC_nfe_onf=2;non_neuro_AN_nfe_onf=27730;non_neuro_AF_nfe_onf=7.21241e-05;non_neuro_nhomalt_nfe_onf=0;non_topmed_AC_eas_male=0;non_topmed_AN_eas_male=9054;non_topmed_AF_eas_male=0.00000e+00;non_topmed_nhomalt_eas_male=0;AC_eas_jpn=0;AN_eas_jpn=152;AF_eas_jpn=0.00000e+00;nhomalt_eas_jpn=0;non_cancer_AC_afr_male=9;non_cancer_AN_afr_male=5672;non_cancer_AF_afr_male=1.58674e-03;non_cancer_nhomalt_afr_male=0;non_cancer_AC_afr=20;non_cancer_AN_afr=14898;non_cancer_AF_afr=1.34246e-03;non_cancer_nhomalt_afr=0;controls_AC_amr_female=2;controls_AN_amr_female=10196;controls_AF_amr_female=1.96155e-04;controls_nhomalt_amr_female=0;non_neuro_AC_fin_male=0;non_neuro_AN_fin_male=9078;non_neuro_AF_fin_male=0.00000e+00;non_neuro_nhomalt_fin_male=0;AC_female=20;AN_female=115280;AF_female=1.73491e-04;nhomalt_female=1;non_neuro_AC_nfe_bgr=0;non_neuro_AN_nfe_bgr=450;non_neuro_AF_nfe_bgr=0.00000e+00;non_neuro_nhomalt_nfe_bgr=0;non_neuro_AC_oth_male=0;non_neuro_AN_oth_male=2460;non_neuro_AF_oth_male=0.00000e+00;non_neuro_nhomalt_oth_male=0;non_topmed_AC_nfe_est=0;non_topmed_AN_nfe_est=238;non_topmed_AF_nfe_est=0.00000e+00;non_topmed_nhomalt_nfe_est=0;non_topmed_AC_nfe_nwe=4;non_topmed_AN_nfe_nwe=40918;non_topmed_AF_nfe_nwe=9.77565e-05;non_topmed_nhomalt_nfe_nwe=0;non_topmed_AC_amr_male=0;non_topmed_AN_amr_male=14232;non_topmed_AF_amr_male=0.00000e+00;non_topmed_nhomalt_amr_male=0;non_cancer_AC_amr=3;non_cancer_AN_amr=34184;non_cancer_AF_amr=8.77604e-05;non_cancer_nhomalt_amr=0;non_topmed_AC_nfe_swe=2;non_topmed_AN_nfe_swe=26058;non_topmed_AF_nfe_swe=7.67519e-05;non_topmed_nhomalt_nfe_swe=1;non_topmed_AC_nfe_onf=2;non_topmed_AN_nfe_onf=30078;non_topmed_AF_nfe_onf=6.64938e-05;non_topmed_nhomalt_nfe_onf=0;controls_AC_eas_kor=0;controls_AN_eas_kor=1882;controls_AF_eas_kor=0.00000e+00;controls_nhomalt_eas_kor=0;non_topmed_AC_eas_oea=0;non_topmed_AN_eas_oea=14416;non_topmed_AF_eas_oea=0.00000e+00;non_topmed_nhomalt_eas_oea=0;controls_AC_eas_male=0;controls_AN_eas_male=4254;controls_AF_eas_male=0.00000e+00;controls_nhomalt_eas_male=0;controls_AC_oth_male=0;controls_AN_oth_male=928;controls_AF_oth_male=0.00000e+00;controls_nhomalt_oth_male=0;non_topmed_AC=28;non_topmed_AN=244232;non_topmed_AF=1.14645e-04;non_topmed_nhomalt=1;controls_AC_fin=0;controls_AN_fin=13384;controls_AF_fin=0.00000e+00;controls_nhomalt_fin=0;AC_eas_kor=0;AN_eas_kor=3810;AF_eas_kor=0.00000e+00;nhomalt_eas_kor=0;non_neuro_AC_nfe=7;non_neuro_AN_nfe=89354;non_neuro_AF_nfe=7.83401e-05;non_neuro_nhomalt_nfe=1;non_neuro_AC_fin_female=0;non_neuro_AN_fin_female=7644;non_neuro_AF_fin_female=0.00000e+00;non_neuro_nhomalt_fin_female=0;non_cancer_AC_nfe_male=4;non_cancer_AN_nfe_male=58262;non_cancer_AF_nfe_male=6.86554e-05;non_cancer_nhomalt_nfe_male=0;controls_AC_eas_oea=0;controls_AN_eas_oea=7044;controls_AF_eas_oea=0.00000e+00;controls_nhomalt_eas_oea=0;non_topmed_AC_nfe_seu=0;non_topmed_AN_nfe_seu=11378;non_topmed_AF_nfe_seu=0.00000e+00;non_topmed_nhomalt_nfe_seu=0;controls_AC_eas_female=0;controls_AN_eas_female=4786;controls_AF_eas_female=0.00000e+00;controls_nhomalt_eas_female=0;non_topmed_AC_asj=0;non_topmed_AN_asj=9934;non_topmed_AF_asj=0.00000e+00;non_topmed_nhomalt_asj=0;controls_AC_nfe_onf=1;controls_AN_nfe_onf=9974;controls_AF_nfe_onf=1.00261e-04;controls_nhomalt_nfe_onf=0;non_neuro_AC=33;non_neuro_AN=207724;non_neuro_AF=1.58865e-04;non_neuro_nhomalt=1;AC_eas_oea=0;AN_eas_oea=14420;AF_eas_oea=0.00000e+00;nhomalt_eas_oea=0;non_topmed_AC_nfe=8;non_topmed_AN_nfe=111330;non_topmed_AF_nfe=7.18584e-05;non_topmed_nhomalt_nfe=1;non_cancer_AC_oth=0;non_cancer_AN_oth=5588;non_cancer_AF_oth=0.00000e+00;non_cancer_nhomalt_oth=0;non_topmed_AC_raw=28;non_topmed_AN_raw=244876;non_topmed_AF_raw=1.14344e-04;non_topmed_nhomalt_raw=1;non_neuro_AC_nfe_est=0;non_neuro_AN_nfe_est=216;non_neuro_AF_nfe_est=0.00000e+00;non_neuro_nhomalt_nfe_est=0;non_topmed_AC_oth_male=0;non_topmed_AN_oth_male=3160;non_topmed_AF_oth_male=0.00000e+00;non_topmed_nhomalt_oth_male=0;non_cancer_AC_oth_male=0;non_cancer_AN_oth_male=2912;non_cancer_AF_oth_male=0.00000e+00;non_cancer_nhomalt_oth_male=0;AC_nfe_est=0;AN_nfe_est=242;AF_nfe_est=0.00000e+00;nhomalt_nfe_est=0;non_cancer_AC_afr_female=11;non_cancer_AN_afr_female=9226;non_cancer_AF_afr_female=1.19228e-03;non_cancer_nhomalt_afr_female=0;non_topmed_AC_afr_male=9;non_topmed_AN_afr_male=4686;non_topmed_AF_afr_male=1.92061e-03;non_topmed_nhomalt_afr_male=0;AC_eas_male=0;AN_eas_male=9058;AF_eas_male=0.00000e+00;nhomalt_eas_male=0;controls_AC_eas=0;controls_AN_eas=9040;controls_AF_eas=0.00000e+00;controls_nhomalt_eas=0;non_neuro_AC_eas_male=0;non_neuro_AN_eas_male=6566;non_neuro_AF_eas_male=0.00000e+00;non_neuro_nhomalt_eas_male=0;non_cancer_AC_nfe_nwe=4;non_cancer_AN_nfe_nwe=39316;non_cancer_AF_nfe_nwe=1.01740e-04;non_cancer_nhomalt_nfe_nwe=0;controls_AC_sas=0;controls_AN_sas=15664;controls_AF_sas=0.00000e+00;controls_nhomalt_sas=0;non_neuro_AC_sas_male=0;non_neuro_AN_sas_male=23030;non_neuro_AF_sas_male=0.00000e+00;non_neuro_nhomalt_sas_male=0;non_neuro_AC_asj_male=0;non_neuro_AN_asj_male=3106;non_neuro_AF_asj_male=0.00000e+00;non_neuro_nhomalt_asj_male=0;non_cancer_AC_nfe_bgr=0;non_cancer_AN_nfe_bgr=2524;non_cancer_AF_nfe_bgr=0.00000e+00;non_cancer_nhomalt_nfe_bgr=0;controls_AC_oth=0;controls_AN_oth=1914;controls_AF_oth=0.00000e+00;controls_nhomalt_oth=0;non_cancer_AC_eas_female=0;non_cancer_AN_eas_female=8944;non_cancer_AF_eas_female=0.00000e+00;non_cancer_nhomalt_eas_female=0;AC_nfe=8;AN_nfe=113418;AF_nfe=7.05355e-05;nhomalt_nfe=1;non_topmed_AC_female=15;non_topmed_AN_female=111032;non_topmed_AF_female=1.35096e-04;non_topmed_nhomalt_female=1;non_neuro_AC_asj=0;non_neuro_AN_asj=6174;non_neuro_AF_asj=0.00000e+00;non_neuro_nhomalt_asj=0;non_topmed_AC_eas_female=0;non_topmed_AN_eas_female=9324;non_topmed_AF_eas_female=0.00000e+00;non_topmed_nhomalt_eas_female=0;non_neuro_AC_raw=33;non_neuro_AN_raw=208134;non_neuro_AF_raw=1.58552e-04;non_neuro_nhomalt_raw=1;non_topmed_AC_eas=0;non_topmed_AN_eas=18378;non_topmed_AF_eas=0.00000e+00;non_topmed_nhomalt_eas=0;non_topmed_AC_fin_male=0;non_topmed_AN_fin_male=11252;non_topmed_AF_fin_male=0.00000e+00;non_topmed_nhomalt_fin_male=0;non_cancer_AC_asj_male=0;non_cancer_AN_asj_male=4936;non_cancer_AF_asj_male=0.00000e+00;non_cancer_nhomalt_asj_male=0;AC_fin=0;AN_fin=21590;AF_fin=0.00000e+00;nhomalt_fin=0;AC_nfe_male=4;AN_nfe_male=63420;AF_nfe_male=6.30716e-05;nhomalt_nfe_male=0;non_topmed_AC_eas_kor=0;non_topmed_AN_eas_kor=3810;non_topmed_AF_eas_kor=0.00000e+00;non_topmed_nhomalt_eas_kor=0;controls_AC_amr_male=0;controls_AN_amr_male=6866;controls_AF_amr_male=0.00000e+00;controls_nhomalt_amr_male=0;non_neuro_AC_eas_oea=0;non_neuro_AN_eas_oea=9448;non_neuro_AF_eas_oea=0.00000e+00;non_neuro_nhomalt_eas_oea=0;AC_sas_female=0;AN_sas_female=7530;AF_sas_female=0.00000e+00;nhomalt_sas_female=0;controls_AC_afr_female=7;controls_AN_afr_female=4240;controls_AF_afr_female=1.65094e-03;controls_nhomalt_afr_female=0;controls_AC_amr=2;controls_AN_amr=17062;controls_AF_amr=1.17220e-04;controls_nhomalt_amr=0;non_topmed_AC_eas_jpn=0;non_topmed_AN_eas_jpn=152;non_topmed_AF_eas_jpn=0.00000e+00;non_topmed_nhomalt_eas_jpn=0;AC_asj_female=0;AN_asj_female=4876;AF_asj_female=0.00000e+00;nhomalt_asj_female=0;non_topmed_AC_nfe_bgr=0;non_topmed_AN_nfe_bgr=2660;non_topmed_AF_nfe_bgr=0.00000e+00;non_topmed_nhomalt_nfe_bgr=0;non_cancer_AC_nfe_est=0;non_cancer_AN_nfe_est=158;non_cancer_AF_nfe_est=0.00000e+00;non_cancer_nhomalt_nfe_est=0;non_neuro_AC_eas=0;non_neuro_AN_eas=13406;non_neuro_AF_eas=0.00000e+00;non_neuro_nhomalt_eas=0;non_cancer_AC_nfe=8;non_cancer_AN_nfe=102402;non_cancer_AF_nfe=7.81235e-05;non_cancer_nhomalt_nfe=1;non_neuro_AC_male=13;non_neuro_AN_male=112256;non_neuro_AF_male=1.15807e-04;non_neuro_nhomalt_male=0;non_neuro_AC_sas_female=0;non_neuro_AN_sas_female=7528;non_neuro_AF_sas_female=0.00000e+00;non_neuro_nhomalt_sas_female=0;AC_asj=0;AN_asj=10016;AF_asj=0.00000e+00;nhomalt_asj=0;controls_AC_nfe_est=0;controls_AN_nfe_est=70;controls_AF_nfe_est=0.00000e+00;controls_nhomalt_nfe_est=0;non_topmed_AC_asj_female=0;non_topmed_AN_asj_female=4830;non_topmed_AF_asj_female=0.00000e+00;non_topmed_nhomalt_asj_female=0;non_cancer_AC_nfe_swe=2;non_cancer_AN_nfe_swe=25276;non_cancer_AF_nfe_swe=7.91264e-05;non_cancer_nhomalt_nfe_swe=1;non_cancer_AC=31;non_cancer_AN=236312;non_cancer_AF=1.31183e-04;non_cancer_nhomalt=1;non_topmed_AC_oth=0;non_topmed_AN_oth=6032;non_topmed_AF_oth=0.00000e+00;non_topmed_nhomalt_oth=0;non_topmed_AC_fin_female=0;non_topmed_AN_fin_female=10336;non_topmed_AF_fin_female=0.00000e+00;non_topmed_nhomalt_fin_female=0;non_cancer_AC_fin_female=0;non_cancer_AN_fin_female=10326;non_cancer_AF_fin_female=0.00000e+00;non_cancer_nhomalt_fin_female=0;AC_oth=0;AN_oth=6108;AF_oth=0.00000e+00;nhomalt_oth=0;non_neuro_AC_nfe_male=3;non_neuro_AN_nfe_male=49624;non_neuro_AF_nfe_male=6.04546e-05;non_neuro_nhomalt_nfe_male=0;controls_AC_female=11;controls_AN_female=51202;controls_AF_female=2.14835e-04;controls_nhomalt_female=1;non_cancer_AC_fin=0;non_cancer_AN_fin=21574;non_cancer_AF_fin=0.00000e+00;non_cancer_nhomalt_fin=0;non_topmed_AC_fin=0;non_topmed_AN_fin=21588;non_topmed_AF_fin=0.00000e+00;non_topmed_nhomalt_fin=0;non_cancer_AC_eas_oea=0;non_cancer_AN_eas_oea=13792;non_cancer_AF_eas_oea=0.00000e+00;non_cancer_nhomalt_eas_oea=0;non_topmed_AC_nfe_female=4;non_topmed_AN_nfe_female=48654;non_topmed_AF_nfe_female=8.22132e-05;non_topmed_nhomalt_nfe_female=1;non_cancer_AC_sas_male=0;non_cancer_AN_sas_male=22996;non_cancer_AF_sas_male=0.00000e+00;non_cancer_nhomalt_sas_male=0;controls_AC_asj_male=0;controls_AN_asj_male=1094;controls_AF_asj_male=0.00000e+00;controls_nhomalt_asj_male=0;non_cancer_AC_raw=31;non_cancer_AN_raw=236956;non_cancer_AF_raw=1.30826e-04;non_cancer_nhomalt_raw=1;non_cancer_AC_eas_male=0;non_cancer_AN_eas_male=8738;non_cancer_AF_eas_male=0.00000e+00;non_cancer_nhomalt_eas_male=0;non_topmed_AC_asj_male=0;non_topmed_AN_asj_male=5104;non_topmed_AF_asj_male=0.00000e+00;non_topmed_nhomalt_asj_male=0;non_neuro_AC_oth=0;non_neuro_AN_oth=4846;non_neuro_AF_oth=0.00000e+00;non_neuro_nhomalt_oth=0;AC_male=14;AN_male=135568;AF_male=1.03269e-04;nhomalt_male=0;controls_AC_fin_female=0;controls_AN_fin_female=6470;controls_AF_fin_female=0.00000e+00;controls_nhomalt_fin_female=0;controls_AC_nfe_bgr=0;controls_AN_nfe_bgr=678;controls_AF_nfe_bgr=0.00000e+00;controls_nhomalt_nfe_bgr=0;controls_AC_asj_female=0;controls_AN_asj_female=1208;controls_AF_asj_female=0.00000e+00;controls_nhomalt_asj_female=0;AC_amr_male=0;AN_amr_male=14290;AF_amr_male=0.00000e+00;nhomalt_amr_male=0;AC_amr_female=3;AN_amr_female=20226;AF_amr_female=1.48324e-04;nhomalt_amr_female=0;non_topmed_AC_sas_male=0;non_topmed_AN_sas_male=23036;non_topmed_AF_sas_male=0.00000e+00;non_topmed_nhomalt_sas_male=0;AC_oth_male=0;AN_oth_male=3186;AF_oth_male=0.00000e+00;nhomalt_oth_male=0;non_cancer_AC_sas=0;non_cancer_AN_sas=30476;non_cancer_AF_sas=0.00000e+00;non_cancer_nhomalt_sas=0;non_neuro_AC_nfe_seu=0;non_neuro_AN_nfe_seu=10926;non_neuro_AF_nfe_seu=0.00000e+00;non_neuro_nhomalt_nfe_seu=0;non_cancer_AC_eas_kor=0;non_cancer_AN_eas_kor=3766;non_cancer_AF_eas_kor=0.00000e+00;non_cancer_nhomalt_eas_kor=0;non_topmed_AC_afr_female=8;non_topmed_AN_afr_female=7336;non_topmed_AF_afr_female=1.09051e-03;non_topmed_nhomalt_afr_female=0;controls_AC_sas_male=0;controls_AN_sas_male=11456;controls_AF_sas_male=0.00000e+00;controls_nhomalt_sas_male=0;non_topmed_AC_sas_female=0;non_topmed_AN_sas_female=7530;non_topmed_AF_sas_female=0.00000e+00;non_topmed_nhomalt_sas_female=0;non_topmed_AC_afr=17;non_topmed_AN_afr=12022;non_topmed_AF_afr=1.41407e-03;non_topmed_nhomalt_afr=0;controls_AC=14;controls_AN=109222;controls_AF=1.28179e-04;controls_nhomalt=1;non_neuro_AC_oth_female=0;non_neuro_AN_oth_female=2386;non_neuro_AF_oth_female=0.00000e+00;non_neuro_nhomalt_oth_female=0;non_topmed_faf95_amr=2.31200e-05;non_topmed_faf99_amr=2.34100e-05;faf95_afr=9.66830e-04;faf99_afr=9.67200e-04;faf95_sas=0.00000e+00;faf99_sas=0.00000e+00;controls_faf95_afr=6.54730e-04;controls_faf99_afr=6.54620e-04;faf95_amr=2.30300e-05;faf99_amr=2.33800e-05;non_neuro_faf95_sas=0.00000e+00;non_neuro_faf99_sas=0.00000e+00;faf95_eas=0.00000e+00;faf99_eas=0.00000e+00;faf95=9.94300e-05;faf99=9.89300e-05;non_neuro_faf95_afr=9.69030e-04;non_neuro_faf99_afr=9.69050e-04;non_cancer_faf95_eas=0.00000e+00;non_cancer_faf99_eas=0.00000e+00;non_neuro_faf95_amr=2.61000e-05;non_neuro_faf99_amr=2.62300e-05;non_topmed_faf95_sas=0.00000e+00;non_topmed_faf99_sas=0.00000e+00;controls_faf95_nfe=1.86300e-05;controls_faf99_nfe=1.81600e-05;non_cancer_faf95_afr=8.89330e-04;non_cancer_faf99_afr=8.89190e-04;non_cancer_faf95_amr=2.32600e-05;non_cancer_faf99_amr=2.34400e-05;non_topmed_faf95=8.13900e-05;non_topmed_faf99=8.13100e-05;non_neuro_faf95_nfe=3.64900e-05;non_neuro_faf99_nfe=3.58700e-05;non_neuro_faf95=1.15840e-04;non_neuro_faf99=1.15450e-04;non_topmed_faf95_nfe=3.48400e-05;non_topmed_faf99_nfe=3.52700e-05;controls_faf95_eas=0.00000e+00;controls_faf99_eas=0.00000e+00;controls_faf95_sas=0.00000e+00;controls_faf99_sas=0.00000e+00;faf95_nfe=3.42700e-05;faf99_nfe=3.48600e-05;non_topmed_faf95_eas=0.00000e+00;non_topmed_faf99_eas=0.00000e+00;controls_faf95_amr=2.03600e-05;controls_faf99_amr=2.02400e-05;non_neuro_faf95_eas=0.00000e+00;non_neuro_faf99_eas=0.00000e+00;non_cancer_faf95_nfe=3.85200e-05;non_cancer_faf99_nfe=3.82000e-05;non_cancer_faf95=9.48900e-05;non_cancer_faf99=9.47500e-05;non_cancer_faf95_sas=0.00000e+00;non_cancer_faf99_sas=0.00000e+00;non_topmed_faf95_afr=9.00250e-04;non_topmed_faf99_afr=9.00830e-04;controls_faf95=7.72000e-05;controls_faf99=7.69900e-05;popmax=afr;AC_popmax=23;AN_popmax=16252;AF_popmax=1.41521e-03;nhomalt_popmax=0;age_hist_het_bin_freq=2|0|2|3|5|4|1|3|3|1;age_hist_het_n_smaller=3;age_hist_het_n_larger=0;age_hist_hom_bin_freq=0|0|0|0|0|0|1|0|0|0;age_hist_hom_n_smaller=0;age_hist_hom_n_larger=0;non_topmed_popmax=afr;non_topmed_AC_popmax=17;non_topmed_AN_popmax=12022;non_topmed_AF_popmax=1.41407e-03;non_topmed_nhomalt_popmax=0;non_neuro_popmax=afr;non_neuro_AC_popmax=23;non_neuro_AN_popmax=16214;non_neuro_AF_popmax=1.41853e-03;non_neuro_nhomalt_popmax=0;non_cancer_popmax=afr;non_cancer_AC_popmax=20;non_cancer_AN_popmax=14898;non_cancer_AF_popmax=1.34246e-03;non_cancer_nhomalt_popmax=0;controls_popmax=afr;controls_AC_popmax=9;controls_AN_popmax=7164;controls_AF_popmax=1.25628e-03;controls_nhomalt_popmax=0;vep=T|stop_gained|HIGH|CCR5|ENSG00000160791|Transcript|ENST00000292303|protein_coding|2/2||ENST00000292303.4:c.673C>T|ENSP00000292303.4:p.Arg225Ter|819|673|225|R/*|Cga/Tga|CM104769&rs146972949&COSM3781819|1||1||SNV|1|HGNC|1606||||CCDS2739.1|ENSP00000292303|P51681|Q9UBT9&Q9P1T4&Q5KSY4&Q5EKN0&Q38L21&J7HJP8&E7BJ57&B8LFP0&B8LFN8&A1A490|UPI000000D955|1|||Superfamily_domains:SSF81321&Gene3D:1.20.1070.10&Pfam_domain:PF00001&hmmpanther:PTHR24227&hmmpanther:PTHR24227:SF45&PROSITE_profiles:PS50262||T:0.0004|T:0|T:0.0015|T:0|T:0|T:0|T:0|T:0.0016|T:0|T:0.0001728|T:1.812e-04|T:0.00154|T:0.0001815|T:0|T:0|T:5.999e-05|T:0||0&0&1|1&0&1||||||HC|||GERP_DIST:708.009800000002&BP_DIST:386&PERCENTILE:0.635505193578848&DIST_FROM_LAST_EXON:-683&50_BP_RULE:FAIL&PHYLOCSF_TOO_SHORT,T|stop_gained|HIGH|CCR5|ENSG00000160791|Transcript|ENST00000343801|protein_coding|3/3||ENST00000343801.4:c.673C>T|ENSP00000343985.4:p.Arg225Ter|1030|673|225|R/*|Cga/Tga|CM104769&rs146972949&COSM3781819|1||1||SNV|1|HGNC|1606|YES|||CCDS2739.1|ENSP00000343985|P51681|Q9UBT9&Q9P1T4&Q5KSY4&Q5EKN0&Q38L21&J7HJP8&E7BJ57&B8LFP0&B8LFN8&A1A490|UPI000000D955|1|||PROSITE_profiles:PS50262&hmmpanther:PTHR24227:SF45&hmmpanther:PTHR24227&Gene3D:1.20.1070.10&Pfam_domain:PF00001&Superfamily_domains:SSF81321||T:0.0004|T:0|T:0.0015|T:0|T:0|T:0|T:0|T:0.0016|T:0|T:0.0001728|T:1.812e-04|T:0.00154|T:0.0001815|T:0|T:0|T:5.999e-05|T:0||0&0&1|1&0&1||||||HC|||GERP_DIST:708.009800000002&BP_DIST:386&PERCENTILE:0.635505193578848&DIST_FROM_LAST_EXON:-683&50_BP_RULE:FAIL&PHYLOCSF_TOO_SHORT,T|stop_gained|HIGH|CCR5|ENSG00000160791|Transcript|ENST00000445772|protein_coding|1/1||ENST00000445772.1:c.673C>T|ENSP00000404881.1:p.Arg225Ter|906|673|225|R/*|Cga/Tga|CM104769&rs146972949&COSM3781819|1||1||SNV|1|HGNC|1606||||CCDS2739.1|ENSP00000404881|P51681|Q9UBT9&Q9P1T4&Q5KSY4&Q5EKN0&Q38L21&J7HJP8&E7BJ57&B8LFP0&B8LFN8&A1A490|UPI000000D955|1|||PROSITE_profiles:PS50262&hmmpanther:PTHR24227:SF45&hmmpanther:PTHR24227&Pfam_domain:PF00001&Gene3D:1.20.1070.10&Superfamily_domains:SSF81321||T:0.0004|T:0|T:0.0015|T:0|T:0|T:0|T:0|T:0.0016|T:0|T:0.0001728|T:1.812e-04|T:0.00154|T:0.0001815|T:0|T:0|T:5.999e-05|T:0||0&0&1|1&0&1||||||HC||SINGLE_EXON|GERP_DIST:708.009800000002&BP_DIST:386&PERCENTILE:0.635505193578848&DIST_FROM_LAST_EXON:-905&50_BP_RULE:FAIL&PHYLOCSF_TOO_SHORT,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-24F11.2|ENSG00000223552|Transcript|ENST00000451485|antisense||2/3|ENST00000451485.1:n.392-2158G>A|||||||CM104769&rs146972949&COSM3781819|1||-1||SNV|1|Clone_based_vega_gene||YES|||||||||||||T:0.0004|T:0|T:0.0015|T:0|T:0|T:0|T:0|T:0.0016|T:0|T:0.0001728|T:1.812e-04|T:0.00154|T:0.0001815|T:0|T:0|T:5.999e-05|T:0||0&0&1|1&0&1||||||||| |
|
02d368ec14cf
"planemo upload for repository https://github.com/phac-nml/gnali/ commit 48745557cc8e603b61ba1a78308f72562f559e59"
nml
parents:
diff
changeset
|
603 3 46414943 rs775750898 TACAGTCAGTATCAATTCTGGAAGAATTTCCAG T 1947603.90 PASS AC=2427;AN=31348;AF=7.74212e-02;rf_tp_probability=9.53514e-01;FS=0.00000e+00;InbreedingCoeff=6.00000e-03;MQ=6.03900e+01;MQRankSum=4.52000e-01;QD=1.69200e+01;ReadPosRankSum=-2.90000e-02;SOR=6.82000e-01;VQSR_POSITIVE_TRAIN_SITE;BaseQRankSum=3.50000e-01;ClippingRankSum=-2.60000e-02;DP=651449;VQSLOD=8.95000e-01;VQSR_culprit=MQRankSum;segdup;rf_positive_label;rf_label=TP;rf_train;variant_type=indel;allele_type=del;n_alt_alleles=1;pab_max=1.00000e+00;gq_hist_alt_bin_freq=0|2|0|0|1|1|0|0|2|1|1|4|2|8|10|10|6|10|13|2273;gq_hist_all_bin_freq=0|4|2|7|11|13|42|105|122|293|508|378|1311|490|1227|629|1675|339|1590|6962;dp_hist_alt_bin_freq=0|1|7|103|272|429|467|464|288|169|81|42|9|2|5|1|1|0|0|1;dp_hist_alt_n_larger=2;dp_hist_all_bin_freq=0|6|133|855|2413|3283|3682|4026|918|231|85|47|12|5|7|1|1|0|0|1;dp_hist_all_n_larger=2;ab_hist_alt_bin_freq=0|0|3|13|33|112|269|379|528|329|325|143|68|17|3|0|1|3|4|11;AC_nfe_seu=4;AN_nfe_seu=106;AF_nfe_seu=3.77358e-02;nhomalt_nfe_seu=0;controls_AC_afr_male=26;controls_AN_afr_male=1408;controls_AF_afr_male=1.84659e-02;controls_nhomalt_afr_male=0;non_topmed_AC_amr=22;non_topmed_AN_amr=810;non_topmed_AF_amr=2.71605e-02;non_topmed_nhomalt_amr=1;AC_raw=2447;AN_raw=31416;AF_raw=7.78902e-02;nhomalt_raw=103;AC_fin_female=271;AN_fin_female=1838;AF_fin_female=1.47443e-01;nhomalt_fin_female=20;non_neuro_AC_asj_female=5;non_neuro_AN_asj_female=60;non_neuro_AF_asj_female=8.33333e-02;non_neuro_nhomalt_asj_female=0;non_neuro_AC_afr_male=26;non_neuro_AN_afr_male=1608;non_neuro_AF_afr_male=1.61692e-02;non_neuro_nhomalt_afr_male=0;AC_afr_male=101;AN_afr_male=5026;AF_afr_male=2.00955e-02;nhomalt_afr_male=1;AC_afr=168;AN_afr=8706;AF_afr=1.92970e-02;nhomalt_afr=1;non_neuro_AC_afr_female=29;non_neuro_AN_afr_female=1780;non_neuro_AF_afr_female=1.62921e-02;non_neuro_nhomalt_afr_female=0;non_topmed_AC_amr_female=8;non_topmed_AN_amr_female=394;non_topmed_AF_amr_female=2.03046e-02;non_topmed_nhomalt_amr_female=0;non_topmed_AC_oth_female=53;non_topmed_AN_oth_female=546;non_topmed_AF_oth_female=9.70696e-02;non_topmed_nhomalt_oth_female=3;AC_eas_female=0;AN_eas_female=538;AF_eas_female=0.00000e+00;nhomalt_eas_female=0;AC_afr_female=67;AN_afr_female=3680;AF_afr_female=1.82065e-02;nhomalt_afr_female=0;non_neuro_AC_female=807;non_neuro_AN_female=9576;non_neuro_AF_female=8.42732e-02;non_neuro_nhomalt_female=31;controls_AC_afr=45;controls_AN_afr=2574;controls_AF_afr=1.74825e-02;controls_nhomalt_afr=0;AC_nfe_onf=190;AN_nfe_onf=2136;AF_nfe_onf=8.89513e-02;nhomalt_nfe_onf=8;controls_AC_fin_male=74;controls_AN_fin_male=606;controls_AF_fin_male=1.22112e-01;controls_nhomalt_fin_male=6;non_neuro_AC_nfe_nwe=800;non_neuro_AN_nfe_nwe=7682;non_neuro_AF_nfe_nwe=1.04140e-01;non_neuro_nhomalt_nfe_nwe=21;AC_fin_male=207;AN_fin_male=1630;AF_fin_male=1.26994e-01;nhomalt_fin_male=16;AC_nfe_female=730;AN_nfe_female=6792;AF_nfe_female=1.07479e-01;nhomalt_nfe_female=27;AC_amr=23;AN_amr=848;AF_amr=2.71226e-02;nhomalt_amr=1;non_topmed_AC_nfe_male=572;non_topmed_AN_nfe_male=5458;non_topmed_AF_nfe_male=1.04800e-01;non_topmed_nhomalt_nfe_male=23;AC_eas=0;AN_eas=1558;AF_eas=0.00000e+00;nhomalt_eas=0;nhomalt=102;non_neuro_AC_nfe_female=641;non_neuro_AN_nfe_female=5970;non_neuro_AF_nfe_female=1.07370e-01;non_neuro_nhomalt_nfe_female=22;non_neuro_AC_afr=55;non_neuro_AN_afr=3388;non_neuro_AF_afr=1.62338e-02;non_neuro_nhomalt_afr=0;controls_AC_raw=885;controls_AN_raw=10884;controls_AF_raw=8.13120e-02;controls_nhomalt_raw=41;controls_AC_male=464;controls_AN_male=5854;controls_AF_male=7.92620e-02;controls_nhomalt_male=24;non_topmed_AC_male=946;non_topmed_AN_male=13976;non_topmed_AF_male=6.76875e-02;non_topmed_nhomalt_male=43;controls_AC_nfe_female=281;controls_AN_nfe_female=2572;controls_AF_nfe_female=1.09253e-01;controls_nhomalt_nfe_female=9;non_neuro_AC_amr=15;non_neuro_AN_amr=554;non_neuro_AF_amr=2.70758e-02;non_neuro_nhomalt_amr=0;non_neuro_AC_eas_female=0;non_neuro_AN_eas_female=538;non_neuro_AF_eas_female=0.00000e+00;non_neuro_nhomalt_eas_female=0;AC_asj_male=30;AN_asj_male=210;AF_asj_male=1.42857e-01;nhomalt_asj_male=2;controls_AC_nfe_male=332;controls_AN_nfe_male=2932;controls_AF_nfe_male=1.13233e-01;controls_nhomalt_nfe_male=16;non_neuro_AC_fin=163;non_neuro_AN_fin=1160;non_neuro_AF_fin=1.40517e-01;non_neuro_nhomalt_fin=13;AC_oth_female=56;AN_oth_female=562;AF_oth_female=9.96441e-02;nhomalt_oth_female=3;controls_AC_nfe=613;controls_AN_nfe=5504;controls_AF_nfe=1.11374e-01;controls_nhomalt_nfe=25;controls_AC_oth_female=23;controls_AN_oth_female=226;controls_AF_oth_female=1.01770e-01;controls_nhomalt_oth_female=2;controls_AC_asj=3;controls_AN_asj=38;controls_AF_asj=7.89474e-02;controls_nhomalt_asj=0;non_neuro_AC_amr_male=7;non_neuro_AN_amr_male=244;non_neuro_AF_amr_male=2.86885e-02;non_neuro_nhomalt_amr_male=0;controls_AC_nfe_nwe=88;controls_AN_nfe_nwe=922;controls_AF_nfe_nwe=9.54447e-02;controls_nhomalt_nfe_nwe=1;AC_nfe_nwe=891;AN_nfe_nwe=8576;AF_nfe_nwe=1.03895e-01;nhomalt_nfe_nwe=24;controls_AC_nfe_seu=2;controls_AN_nfe_seu=56;controls_AF_nfe_seu=3.57143e-02;controls_nhomalt_nfe_seu=0;non_neuro_AC_amr_female=8;non_neuro_AN_amr_female=310;non_neuro_AF_amr_female=2.58065e-02;non_neuro_nhomalt_amr_female=0;non_neuro_AC_nfe_onf=156;non_neuro_AN_nfe_onf=1722;non_neuro_AF_nfe_onf=9.05923e-02;non_neuro_nhomalt_nfe_onf=6;non_topmed_AC_eas_male=0;non_topmed_AN_eas_male=1000;non_topmed_AF_eas_male=0.00000e+00;non_topmed_nhomalt_eas_male=0;controls_AC_amr_female=3;controls_AN_amr_female=120;controls_AF_amr_female=2.50000e-02;controls_nhomalt_amr_female=0;non_neuro_AC_fin_male=74;non_neuro_AN_fin_male=606;non_neuro_AF_fin_male=1.22112e-01;non_neuro_nhomalt_fin_male=6;AC_female=1138;AN_female=13904;AF_female=8.18470e-02;nhomalt_female=50;non_neuro_AC_oth_male=36;non_neuro_AN_oth_male=368;non_neuro_AF_oth_male=9.78261e-02;non_neuro_nhomalt_oth_male=2;non_topmed_AC_nfe_est=533;non_topmed_AN_nfe_est=4552;non_topmed_AF_nfe_est=1.17091e-01;non_topmed_nhomalt_nfe_est=25;non_topmed_AC_nfe_nwe=521;non_topmed_AN_nfe_nwe=4884;non_topmed_AF_nfe_nwe=1.06675e-01;non_topmed_nhomalt_nfe_nwe=14;non_topmed_AC_amr_male=14;non_topmed_AN_amr_male=416;non_topmed_AF_amr_male=3.36538e-02;non_topmed_nhomalt_amr_male=1;non_topmed_AC_nfe_onf=132;non_topmed_AN_nfe_onf=1514;non_topmed_AF_nfe_onf=8.71863e-02;non_topmed_nhomalt_nfe_onf=7;controls_AC_eas_male=0;controls_AN_eas_male=572;controls_AF_eas_male=0.00000e+00;controls_nhomalt_eas_male=0;controls_AC_oth_male=26;controls_AN_oth_male=196;controls_AF_oth_male=1.32653e-01;controls_nhomalt_oth_male=2;non_topmed_AC=1966;non_topmed_AN=26546;non_topmed_AF=7.40601e-02;non_topmed_nhomalt=89;controls_AC_fin=161;controls_AN_fin=1158;controls_AF_fin=1.39033e-01;controls_nhomalt_fin=12;non_neuro_AC_nfe=1440;non_neuro_AN_nfe=13586;non_neuro_AF_nfe=1.05991e-01;non_neuro_nhomalt_nfe=49;non_neuro_AC_fin_female=89;non_neuro_AN_fin_female=554;non_neuro_AF_fin_female=1.60650e-01;non_neuro_nhomalt_fin_female=7;non_topmed_AC_nfe_seu=4;non_topmed_AN_nfe_seu=106;non_topmed_AF_nfe_seu=3.77358e-02;non_topmed_nhomalt_nfe_seu=0;controls_AC_eas_female=0;controls_AN_eas_female=342;controls_AF_eas_female=0.00000e+00;controls_nhomalt_eas_female=0;non_topmed_AC_asj=15;non_topmed_AN_asj=138;non_topmed_AF_asj=1.08696e-01;non_topmed_nhomalt_asj=0;controls_AC_nfe_onf=46;controls_AN_nfe_onf=440;controls_AF_nfe_onf=1.04545e-01;controls_nhomalt_nfe_onf=2;non_neuro_AC=1774;non_neuro_AN=21224;non_neuro_AF=8.35846e-02;non_neuro_nhomalt=68;non_topmed_AC_nfe=1190;non_topmed_AN_nfe=11056;non_topmed_AF_nfe=1.07634e-01;non_topmed_nhomalt_nfe=46;non_topmed_AC_raw=1983;non_topmed_AN_raw=26608;non_topmed_AF_raw=7.45265e-02;non_topmed_nhomalt_raw=90;non_neuro_AC_nfe_est=482;non_neuro_AN_nfe_est=4128;non_neuro_AF_nfe_est=1.16764e-01;non_neuro_nhomalt_nfe_est=22;non_topmed_AC_oth_male=41;non_topmed_AN_oth_male=464;non_topmed_AF_oth_male=8.83621e-02;non_topmed_nhomalt_oth_male=2;AC_nfe_est=536;AN_nfe_est=4574;AF_nfe_est=1.17184e-01;nhomalt_nfe_est=25;non_topmed_AC_afr_male=100;non_topmed_AN_afr_male=4932;non_topmed_AF_afr_male=2.02758e-02;non_topmed_nhomalt_afr_male=1;AC_eas_male=0;AN_eas_male=1020;AF_eas_male=0.00000e+00;nhomalt_eas_male=0;controls_AC_eas=0;controls_AN_eas=914;controls_AF_eas=0.00000e+00;controls_nhomalt_eas=0;non_neuro_AC_eas_male=0;non_neuro_AN_eas_male=1020;non_neuro_AF_eas_male=0.00000e+00;non_neuro_nhomalt_eas_male=0;non_neuro_AC_asj_male=25;non_neuro_AN_asj_male=186;non_neuro_AF_asj_male=1.34409e-01;non_neuro_nhomalt_asj_male=2;controls_AC_oth=49;controls_AN_oth=422;controls_AF_oth=1.16114e-01;controls_nhomalt_oth=4;AC_nfe=1621;AN_nfe=15392;AF_nfe=1.05314e-01;nhomalt_nfe=57;non_topmed_AC_female=1020;non_topmed_AN_female=12570;non_topmed_AF_female=8.11456e-02;non_topmed_nhomalt_female=46;non_neuro_AC_asj=30;non_neuro_AN_asj=246;non_neuro_AF_asj=1.21951e-01;non_neuro_nhomalt_asj=2;non_topmed_AC_eas_female=0;non_topmed_AN_eas_female=520;non_topmed_AF_eas_female=0.00000e+00;non_topmed_nhomalt_eas_female=0;non_neuro_AC_raw=1791;non_neuro_AN_raw=21272;non_neuro_AF_raw=8.41952e-02;non_neuro_nhomalt_raw=69;non_topmed_AC_eas=0;non_topmed_AN_eas=1520;non_topmed_AF_eas=0.00000e+00;non_topmed_nhomalt_eas=0;non_topmed_AC_fin_male=207;non_topmed_AN_fin_male=1630;non_topmed_AF_fin_male=1.26994e-01;non_topmed_nhomalt_fin_male=16;AC_fin=478;AN_fin=3468;AF_fin=1.37832e-01;nhomalt_fin=36;AC_nfe_male=891;AN_nfe_male=8600;AF_nfe_male=1.03605e-01;nhomalt_nfe_male=30;controls_AC_amr_male=4;controls_AN_amr_male=126;controls_AF_amr_male=3.17460e-02;controls_nhomalt_amr_male=0;controls_AC_afr_female=19;controls_AN_afr_female=1166;controls_AF_afr_female=1.62950e-02;controls_nhomalt_afr_female=0;controls_AC_amr=7;controls_AN_amr=246;controls_AF_amr=2.84553e-02;controls_nhomalt_amr=0;AC_asj_female=5;AN_asj_female=80;AF_asj_female=6.25000e-02;nhomalt_asj_female=0;non_neuro_AC_eas=0;non_neuro_AN_eas=1558;non_neuro_AF_eas=0.00000e+00;non_neuro_nhomalt_eas=0;non_neuro_AC_male=967;non_neuro_AN_male=11648;non_neuro_AF_male=8.30185e-02;non_neuro_nhomalt_male=37;AC_asj=35;AN_asj=290;AF_asj=1.20690e-01;nhomalt_asj=2;controls_AC_nfe_est=477;controls_AN_nfe_est=4086;controls_AF_nfe_est=1.16740e-01;controls_nhomalt_nfe_est=22;non_topmed_AC_asj_female=3;non_topmed_AN_asj_female=62;non_topmed_AF_asj_female=4.83871e-02;non_topmed_nhomalt_asj_female=0;non_topmed_AC_oth=94;non_topmed_AN_oth=1010;non_topmed_AF_oth=9.30693e-02;non_topmed_nhomalt_oth=5;non_topmed_AC_fin_female=271;non_topmed_AN_fin_female=1838;non_topmed_AF_fin_female=1.47443e-01;non_topmed_nhomalt_fin_female=20;AC_oth=102;AN_oth=1086;AF_oth=9.39227e-02;nhomalt_oth=5;non_neuro_AC_nfe_male=799;non_neuro_AN_nfe_male=7616;non_neuro_AF_nfe_male=1.04911e-01;non_neuro_nhomalt_nfe_male=27;controls_AC_female=414;controls_AN_female=5002;controls_AF_female=8.27669e-02;controls_nhomalt_female=17;non_topmed_AC_fin=478;non_topmed_AN_fin=3468;non_topmed_AF_fin=1.37832e-01;non_topmed_nhomalt_fin=36;non_topmed_AC_nfe_female=618;non_topmed_AN_nfe_female=5598;non_topmed_AF_nfe_female=1.10397e-01;non_topmed_nhomalt_nfe_female=23;controls_AC_asj_male=2;controls_AN_asj_male=14;controls_AF_asj_male=1.42857e-01;controls_nhomalt_asj_male=0;non_topmed_AC_asj_male=12;non_topmed_AN_asj_male=76;non_topmed_AF_asj_male=1.57895e-01;non_topmed_nhomalt_asj_male=0;non_neuro_AC_oth=71;non_neuro_AN_oth=732;non_neuro_AF_oth=9.69945e-02;non_neuro_nhomalt_oth=4;AC_male=1289;AN_male=17444;AF_male=7.38936e-02;nhomalt_male=52;controls_AC_fin_female=87;controls_AN_fin_female=552;controls_AF_fin_female=1.57609e-01;controls_nhomalt_fin_female=6;controls_AC_asj_female=1;controls_AN_asj_female=24;controls_AF_asj_female=4.16667e-02;controls_nhomalt_asj_female=0;AC_amr_male=14;AN_amr_male=434;AF_amr_male=3.22581e-02;nhomalt_amr_male=1;AC_amr_female=9;AN_amr_female=414;AF_amr_female=2.17391e-02;nhomalt_amr_female=0;AC_oth_male=46;AN_oth_male=524;AF_oth_male=8.77863e-02;nhomalt_oth_male=2;non_neuro_AC_nfe_seu=2;non_neuro_AN_nfe_seu=54;non_neuro_AF_nfe_seu=3.70370e-02;non_neuro_nhomalt_nfe_seu=0;non_topmed_AC_afr_female=67;non_topmed_AN_afr_female=3612;non_topmed_AF_afr_female=1.85493e-02;non_topmed_nhomalt_afr_female=0;non_topmed_AC_afr=167;non_topmed_AN_afr=8544;non_topmed_AF_afr=1.95459e-02;non_topmed_nhomalt_afr=1;controls_AC=878;controls_AN=10856;controls_AF=8.08769e-02;controls_nhomalt=41;non_neuro_AC_oth_female=35;non_neuro_AN_oth_female=364;non_neuro_AF_oth_female=9.61538e-02;non_neuro_nhomalt_oth_female=2;non_topmed_faf95_amr=1.83865e-02;non_topmed_faf99_amr=1.83872e-02;faf95_afr=1.69148e-02;faf99_afr=1.69145e-02;controls_faf95_afr=1.34271e-02;controls_faf99_afr=1.34270e-02;faf95_amr=1.85367e-02;faf99_amr=1.85368e-02;faf95_eas=0.00000e+00;faf99_eas=0.00000e+00;faf95=7.48535e-02;faf99=7.48541e-02;non_neuro_faf95_afr=1.28081e-02;non_neuro_faf99_afr=1.28087e-02;non_neuro_faf95_amr=1.66897e-02;non_neuro_faf99_amr=1.66898e-02;controls_faf95_nfe=1.04079e-01;controls_faf99_nfe=1.04079e-01;non_topmed_faf95=7.13334e-02;non_topmed_faf99=7.13338e-02;non_neuro_faf95_nfe=1.01439e-01;non_neuro_faf99_nfe=1.01439e-01;non_neuro_faf95=8.03470e-02;non_neuro_faf99=8.03471e-02;non_topmed_faf95_nfe=1.02553e-01;non_topmed_faf99_nfe=1.02553e-01;controls_faf95_eas=0.00000e+00;controls_faf99_eas=0.00000e+00;faf95_nfe=1.01049e-01;faf99_nfe=1.01049e-01;non_topmed_faf95_eas=0.00000e+00;non_topmed_faf99_eas=0.00000e+00;controls_faf95_amr=1.33541e-02;controls_faf99_amr=1.33544e-02;non_neuro_faf95_eas=0.00000e+00;non_neuro_faf99_eas=0.00000e+00;non_topmed_faf95_afr=1.71260e-02;non_topmed_faf99_afr=1.71258e-02;controls_faf95=7.64398e-02;controls_faf99=7.64402e-02;controls_popmax=nfe;controls_AC_popmax=613;controls_AN_popmax=5504;controls_AF_popmax=1.11374e-01;controls_nhomalt_popmax=25;popmax=nfe;AC_popmax=1621;AN_popmax=15392;AF_popmax=1.05314e-01;nhomalt_popmax=57;age_hist_het_bin_freq=105|106|166|234|289|221|173|108|56|15;age_hist_het_n_smaller=251;age_hist_het_n_larger=7;age_hist_hom_bin_freq=3|3|5|12|10|10|8|8|4|0;age_hist_hom_n_smaller=12;age_hist_hom_n_larger=1;non_neuro_popmax=nfe;non_neuro_AC_popmax=1440;non_neuro_AN_popmax=13586;non_neuro_AF_popmax=1.05991e-01;non_neuro_nhomalt_popmax=49;non_topmed_popmax=nfe;non_topmed_AC_popmax=1190;non_topmed_AN_popmax=11056;non_topmed_AF_popmax=1.07634e-01;non_topmed_nhomalt_popmax=46;vep=-|frameshift_variant|HIGH|CCR5|ENSG00000160791|Transcript|ENST00000292303|protein_coding|2/2||ENST00000292303.4:c.554_585delGTCAGTATCAATTCTGGAAGAATTTCCAGACA|ENSP00000292303.4:p.Ser185IlefsTer32|697-728|551-582|184-194|YSQYQFWKNFQ/X|tACAGTCAGTATCAATTCTGGAAGAATTTCCAG/t|rs562091107&COSM1423390|1||1||deletion|1|HGNC|1606||||CCDS2739.1|ENSP00000292303|P51681|Q9UBT9&Q9P1T4&Q5KSY4&Q5EKN0&Q38L21&J7HJP8&E7BJ57&B8LFP0&B8LFN8&A1A490|UPI000000D955|1|||Prints_domain:PR01110&Prints_domain:PR01110&Superfamily_domains:SSF81321&Gene3D:1.20.1070.10&Pfam_domain:PF00001&hmmpanther:PTHR24227&hmmpanther:PTHR24227:SF45&PROSITE_profiles:PS50262|3|-:0.0292||-:0.003|-:0.0317|-:0|-:0.1103|-:0.0092|-:0.0136|-:0.0847||||||||||0&1|0&1||||||HC|||GERP_DIST:923.849800000004&BP_DIST:508&PERCENTILE:0.54957507082153&DIST_FROM_LAST_EXON:-561&50_BP_RULE:FAIL&PHYLOCSF_TOO_SHORT,-|frameshift_variant|HIGH|CCR5|ENSG00000160791|Transcript|ENST00000343801|protein_coding|3/3||ENST00000343801.4:c.554_585delGTCAGTATCAATTCTGGAAGAATTTCCAGACA|ENSP00000343985.4:p.Ser185IlefsTer32|908-939|551-582|184-194|YSQYQFWKNFQ/X|tACAGTCAGTATCAATTCTGGAAGAATTTCCAG/t|rs562091107&COSM1423390|1||1||deletion|1|HGNC|1606|YES|||CCDS2739.1|ENSP00000343985|P51681|Q9UBT9&Q9P1T4&Q5KSY4&Q5EKN0&Q38L21&J7HJP8&E7BJ57&B8LFP0&B8LFN8&A1A490|UPI000000D955|1|||PROSITE_profiles:PS50262&hmmpanther:PTHR24227:SF45&hmmpanther:PTHR24227&Gene3D:1.20.1070.10&Pfam_domain:PF00001&Superfamily_domains:SSF81321&Prints_domain:PR01110&Prints_domain:PR01110|3|-:0.0292||-:0.003|-:0.0317|-:0|-:0.1103|-:0.0092|-:0.0136|-:0.0847||||||||||0&1|0&1||||||HC|||GERP_DIST:923.849800000004&BP_DIST:508&PERCENTILE:0.54957507082153&DIST_FROM_LAST_EXON:-561&50_BP_RULE:FAIL&PHYLOCSF_TOO_SHORT,-|frameshift_variant|HIGH|CCR5|ENSG00000160791|Transcript|ENST00000445772|protein_coding|1/1||ENST00000445772.1:c.554_585delGTCAGTATCAATTCTGGAAGAATTTCCAGACA|ENSP00000404881.1:p.Ser185IlefsTer32|784-815|551-582|184-194|YSQYQFWKNFQ/X|tACAGTCAGTATCAATTCTGGAAGAATTTCCAG/t|rs562091107&COSM1423390|1||1||deletion|1|HGNC|1606||||CCDS2739.1|ENSP00000404881|P51681|Q9UBT9&Q9P1T4&Q5KSY4&Q5EKN0&Q38L21&J7HJP8&E7BJ57&B8LFP0&B8LFN8&A1A490|UPI000000D955|1|||PROSITE_profiles:PS50262&hmmpanther:PTHR24227:SF45&hmmpanther:PTHR24227&Pfam_domain:PF00001&Gene3D:1.20.1070.10&Superfamily_domains:SSF81321&Prints_domain:PR01110&Prints_domain:PR01110|3|-:0.0292||-:0.003|-:0.0317|-:0|-:0.1103|-:0.0092|-:0.0136|-:0.0847||||||||||0&1|0&1||||||HC||SINGLE_EXON|GERP_DIST:923.849800000004&BP_DIST:508&PERCENTILE:0.54957507082153&DIST_FROM_LAST_EXON:-783&50_BP_RULE:FAIL&PHYLOCSF_TOO_SHORT,-|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-24F11.2|ENSG00000223552|Transcript|ENST00000451485|antisense||2/3|ENST00000451485.1:n.392-2067_392-2036delCTGGAAATTCTTCCAGAATTGATACTGACTGT|||||||rs562091107&COSM1423390|1||-1||deletion|1|Clone_based_vega_gene||YES|||||||||||||-:0.0292||-:0.003|-:0.0317|-:0|-:0.1103|-:0.0092|-:0.0136|-:0.0847||||||||||0&1|0&1||||||||| |