Mercurial > repos > nml > mykrobe_parser
diff test-data/prediction_2020/data/ERR3335753_L1.json @ 6:8e7e5a660942 draft
planemo upload for repository https://github.com/phac-nml/mykrobe-parser commit 077a66175f3666924b42f216bbcb671ee0d026f2
| author | nml |
|---|---|
| date | Fri, 22 Sep 2023 17:24:02 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/prediction_2020/data/ERR3335753_L1.json Fri Sep 22 17:24:02 2023 +0000 @@ -0,0 +1,363 @@ +{ + "ERR3335753_L1": { + "susceptibility": { + "Ofloxacin": { + "predict": "S" + }, + "Moxifloxacin": { + "predict": "S" + }, + "Isoniazid": { + "predict": "S" + }, + "Kanamycin": { + "predict": "S" + }, + "Ethambutol": { + "predict": "S" + }, + "Streptomycin": { + "predict": "S" + }, + "Ciprofloxacin": { + "predict": "S" + }, + "Pyrazinamide": { + "predict": "r", + "called_by": { + "pncA_T389TG-A2288853CA": { + "variant": null, + "genotype": [ + 0, + 1 + ], + "genotype_likelihoods": [ + -1707.2912821258215, + -685.0256738025864, + -10049.785656880731 + ], + "info": { + "coverage": { + "reference": { + "percent_coverage": 100.0, + "median_depth": 131, + "min_non_zero_depth": 128, + "kmer_count": 2768, + "klen": 21 + }, + "alternate": { + "percent_coverage": 100.0, + "median_depth": 43, + "min_non_zero_depth": 41, + "kmer_count": 779, + 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