Mercurial > repos > nml > package_python_3_4_hyphy_2_2_6

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planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_2_2_6 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa
author nml
date Thu, 07 Jul 2016 09:56:00 -0400
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6e10967fdc7a planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_2_2_6 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa
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1 <?xml version="1.0"?>
6e10967fdc7a planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_2_2_6 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa
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2 <tool_dependency>
6e10967fdc7a planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_2_2_6 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa
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3 <package name="python" version="3.4">
6e10967fdc7a planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_2_2_6 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa
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4 <repository changeset_revision="20ecf5cd3c0e" name="package_python_3_4" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
6e10967fdc7a planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_2_2_6 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa
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5 </package>
6e10967fdc7a planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_2_2_6 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa
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6 <package name="cmake" version="3.2.3">
6e10967fdc7a planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_2_2_6 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa
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7 <repository changeset_revision="1aea698a1c63" name="package_cmake_3_2_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
6e10967fdc7a planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_2_2_6 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa
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8 </package>
6e10967fdc7a planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_2_2_6 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa
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9 <package name="hyphy" version="2.2.6">
6e10967fdc7a planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_2_2_6 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa
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10 <install version="1.0">
6e10967fdc7a planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_2_2_6 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa
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11 <actions>
6e10967fdc7a planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_2_2_6 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa
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12 <action type="download_by_url">https://github.com/veg/hyphy/archive/2.2.6.tar.gz</action>
6e10967fdc7a planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_2_2_6 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa
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13 <action type="set_environment_for_install">
6e10967fdc7a planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_2_2_6 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa
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14 <repository changeset_revision="1aea698a1c63" name="package_cmake_3_2_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
6e10967fdc7a planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_2_2_6 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa
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15 <package name="cmake" version="3.2.3" />
6e10967fdc7a planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_2_2_6 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa
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16 </repository>
6e10967fdc7a planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_2_2_6 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa
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17 </action>
6e10967fdc7a planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_2_2_6 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa
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18 <action type="shell_command">cmake -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR -DINSTALL_PREFIX=$INSTALL_DIR ./</action>
6e10967fdc7a planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_2_2_6 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa
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19 <action type="shell_command">make MP2</action>
6e10967fdc7a planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_2_2_6 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa
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20 <action type="make_install" />
6e10967fdc7a planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_2_2_6 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa
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21 <action type="set_environment">
6e10967fdc7a planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_2_2_6 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa
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22 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib</environment_variable>
6e10967fdc7a planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_2_2_6 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa
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23 <environment_variable action="append_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
6e10967fdc7a planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_2_2_6 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa
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24 </action>
6e10967fdc7a planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_2_2_6 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa
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25 </actions>
6e10967fdc7a planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_2_2_6 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa
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26 </install>
6e10967fdc7a planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_2_2_6 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa
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27 <readme>
6e10967fdc7a planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_2_2_6 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa
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28 This installs HyPhy 2.2.6.
6e10967fdc7a planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_2_2_6 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa
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29
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30 See usage instructions here: http://hyphy.org/w/index.php/Main_Page
6e10967fdc7a planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_2_2_6 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa
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31 </readme>
6e10967fdc7a planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_2_2_6 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa
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32 </package>
6e10967fdc7a planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_2_2_6 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa
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33 </tool_dependency>