Mercurial > repos > nml > package_python_3_4_hyphy_2_2_6
comparison tool_dependencies.xml @ 0:6e10967fdc7a draft default tip
planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_2_2_6 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa
| author | nml |
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| date | Thu, 07 Jul 2016 09:56:00 -0400 |
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| children |
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| -1:000000000000 | 0:6e10967fdc7a |
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| 1 <?xml version="1.0"?> | |
| 2 <tool_dependency> | |
| 3 <package name="python" version="3.4"> | |
| 4 <repository changeset_revision="20ecf5cd3c0e" name="package_python_3_4" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
| 5 </package> | |
| 6 <package name="cmake" version="3.2.3"> | |
| 7 <repository changeset_revision="1aea698a1c63" name="package_cmake_3_2_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
| 8 </package> | |
| 9 <package name="hyphy" version="2.2.6"> | |
| 10 <install version="1.0"> | |
| 11 <actions> | |
| 12 <action type="download_by_url">https://github.com/veg/hyphy/archive/2.2.6.tar.gz</action> | |
| 13 <action type="set_environment_for_install"> | |
| 14 <repository changeset_revision="1aea698a1c63" name="package_cmake_3_2_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> | |
| 15 <package name="cmake" version="3.2.3" /> | |
| 16 </repository> | |
| 17 </action> | |
| 18 <action type="shell_command">cmake -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR -DINSTALL_PREFIX=$INSTALL_DIR ./</action> | |
| 19 <action type="shell_command">make MP2</action> | |
| 20 <action type="make_install" /> | |
| 21 <action type="set_environment"> | |
| 22 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib</environment_variable> | |
| 23 <environment_variable action="append_to" name="PATH">$INSTALL_DIR/bin</environment_variable> | |
| 24 </action> | |
| 25 </actions> | |
| 26 </install> | |
| 27 <readme> | |
| 28 This installs HyPhy 2.2.6. | |
| 29 | |
| 30 See usage instructions here: http://hyphy.org/w/index.php/Main_Page | |
| 31 </readme> | |
| 32 </package> | |
| 33 </tool_dependency> |