Mercurial > repos > nml > package_python_3_4_hyphy_2_2_6

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planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_2_2_6 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa
author nml
date Thu, 07 Jul 2016 09:56:00 -0400
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<?xml version="1.0"?>
<tool_dependency>
    <package name="python" version="3.4">
      <repository changeset_revision="20ecf5cd3c0e" name="package_python_3_4" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="cmake" version="3.2.3">
      <repository changeset_revision="1aea698a1c63" name="package_cmake_3_2_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="hyphy" version="2.2.6">
        <install version="1.0">
          <actions>
              <action type="download_by_url">https://github.com/veg/hyphy/archive/2.2.6.tar.gz</action>
              <action type="set_environment_for_install">
                  <repository changeset_revision="1aea698a1c63" name="package_cmake_3_2_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                      <package name="cmake" version="3.2.3" />
                  </repository>
              </action>
              <action type="shell_command">cmake -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR -DINSTALL_PREFIX=$INSTALL_DIR ./</action>
              <action type="shell_command">make MP2</action>
              <action type="make_install" />
              <action type="set_environment">
                <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib</environment_variable>
                <environment_variable action="append_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
              </action>
          </actions>
        </install>
        <readme>
This installs HyPhy 2.2.6.

See usage instructions here: http://hyphy.org/w/index.php/Main_Page
        </readme>
    </package>
</tool_dependency>