Mercurial > repos > nml > package_spades_3_9_0

comparison tool_dependencies.xml @ 0:d8c8c3dc8f9a draft default tip

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planemo upload commit 4f3721ca835a97f76cb7557d742651c0d7f101a0
author nml
date Mon, 08 Aug 2016 12:51:10 -0400
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-1:000000000000 0:d8c8c3dc8f9a
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="spades" version="3.9.0">
4 <install version="1.0">
5 <actions>
6 <action type="download_by_url">http://spades.bioinf.spbau.ru/release3.9.0/SPAdes-3.9.0-Linux.tar.gz</action>
7 <!-- Copying the whole bin folder -->
8 <action type="make_directory">$INSTALL_DIR/bin</action>
9 <action type="make_directory">$INSTALL_DIR/share</action>
10 <action type="move_directory_files">
11 <source_directory>bin</source_directory>
12 <destination_directory>$INSTALL_DIR/bin</destination_directory>
13 </action>
14 <action type="move_directory_files">
15 <source_directory>share</source_directory>
16 <destination_directory>$INSTALL_DIR/share</destination_directory>
17 </action>
18 <action type="set_environment">
19 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
20 </action>
21 </actions>
22 </install>
23 <readme>
24 This installs SPAdes 3.9.
25
26 See manual here http://spades.bioinf.spbau.ru/release3.9.0/manual.html
27 See also here http://bioinf.spbau.ru/en/spades
28
29 Author : Philip Mabon
30 Original author : Lionel Guy
31 </readme>
32 </package>
33 </tool_dependency>
34