Mercurial > repos > nml > package_spades_3_9_0

view tool_dependencies.xml @ 0:d8c8c3dc8f9a draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit 4f3721ca835a97f76cb7557d742651c0d7f101a0
author nml
date Mon, 08 Aug 2016 12:51:10 -0400
parents
children
line wrap: on
line source

<?xml version="1.0"?>
<tool_dependency>
    <package name="spades" version="3.9.0">
        <install version="1.0">
            <actions>
                <action type="download_by_url">http://spades.bioinf.spbau.ru/release3.9.0/SPAdes-3.9.0-Linux.tar.gz</action>
                <!-- Copying the whole bin folder -->
		<action type="make_directory">$INSTALL_DIR/bin</action>
		<action type="make_directory">$INSTALL_DIR/share</action>
		<action type="move_directory_files">
		  <source_directory>bin</source_directory>
		  <destination_directory>$INSTALL_DIR/bin</destination_directory>
		</action>
                <action type="move_directory_files">
		  <source_directory>share</source_directory>
		  <destination_directory>$INSTALL_DIR/share</destination_directory>
		</action>
                <action type="set_environment">
                <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
This installs SPAdes 3.9.

See manual here http://spades.bioinf.spbau.ru/release3.9.0/manual.html
See also here http://bioinf.spbau.ru/en/spades

Author : Philip Mabon
Original author : Lionel Guy
        </readme>
    </package>
</tool_dependency>