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annotate test-data/lineage_report.csv @ 0:f612c8391bd8 draft

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"planemo upload for repository https://github.com/hCoV-2019/pangolin commit 5278814fe0175e7ac73ae3f43c443bbe549197ee"
author nml
date Fri, 01 May 2020 11:30:48 -0400
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Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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f612c8391bd8 "planemo upload for repository https://github.com/hCoV-2019/pangolin commit 5278814fe0175e7ac73ae3f43c443bbe549197ee"
nml
parents:
diff changeset
1 taxon,lineage,SH-alrt,UFbootstrap,lineages_version,status,note
f612c8391bd8 "planemo upload for repository https://github.com/hCoV-2019/pangolin commit 5278814fe0175e7ac73ae3f43c443bbe549197ee"
nml
parents:
diff changeset
2 Japan/DP0779/2020|EPI_ISL_416626||Japan|unknown||2020-02-17,B,100,100,2020-04-27,passed_qc,
f612c8391bd8 "planemo upload for repository https://github.com/hCoV-2019/pangolin commit 5278814fe0175e7ac73ae3f43c443bbe549197ee"
nml
parents:
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3 USA/NY-NYUMC7/2020|EPI_ISL_418192||USA|New_York|Manhattan|2020-03-16,B.1,100,100,2020-04-27,passed_qc,
f612c8391bd8 "planemo upload for repository https://github.com/hCoV-2019/pangolin commit 5278814fe0175e7ac73ae3f43c443bbe549197ee"
nml
parents:
diff changeset
4 This_seq_has_no_seq,None,0,0,2020-04-27,fail,seq_len:0
f612c8391bd8 "planemo upload for repository https://github.com/hCoV-2019/pangolin commit 5278814fe0175e7ac73ae3f43c443bbe549197ee"
nml
parents:
diff changeset
5 This_seq_is_too_short,None,0,0,2020-04-27,fail,seq_len:2997
f612c8391bd8 "planemo upload for repository https://github.com/hCoV-2019/pangolin commit 5278814fe0175e7ac73ae3f43c443bbe549197ee"
nml
parents:
diff changeset
6 This_seq_has_lots_of_Ns,None,0,0,2020-04-27,fail,N_content:0.98
f612c8391bd8 "planemo upload for repository https://github.com/hCoV-2019/pangolin commit 5278814fe0175e7ac73ae3f43c443bbe549197ee"
nml
parents:
diff changeset
7 This_seq_is_literally_just_N,None,0,0,2020-04-27,fail,N_content:1.0