Mercurial > repos > nml > sistr_cmd

view test-data/sistr-results-13-1101.tabular @ 4:17fcac7ddf54 draft

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"planemo upload commit 5d0cc76371b061089f1399d21aea86540cbcab4f"
author nml
date Thu, 06 Aug 2020 11:48:49 -0400
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cgmlst_ST	cgmlst_distance	cgmlst_found_loci	cgmlst_genome_match	cgmlst_matching_alleles	cgmlst_subspecies	fasta_filepath	genome	h1	h2	mash_distance	mash_genome	mash_match	mash_serovar	mash_subspecies	o_antigen	qc_messages	qc_status	serogroup	serovar	serovar_antigen	serovar_cgmlst
3782467861	0.045454545454545414	330	SRR2174054	315	enterica	/galaxy/database/files/000/dataset_700.dat	13-1101-Paratyphi_B	b	1,2	0.00178577	72308	929	Paratyphi B var. Java	enterica	1,4,[5],12	INFO: Number of cgMLST330 loci found (n=330)	PASS	B	Paratyphi B var. Java	Paratyphi B|Paratyphi B var. Java|Limete	Paratyphi B var. Java