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"planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 57067916cb7b9c5b65c1da59d4bbb846c3e3af2f"
author nml
date Tue, 23 Jun 2020 10:27:34 -0400
parents 317ba2ee501d
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4d3e3d7aa0c4 "planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 57067916cb7b9c5b65c1da59d4bbb846c3e3af2f"
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1 <tool id="snvmatrix" name="SNV Matrix" version ="@VERSION@+galaxy1">
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2 <description>Create SNV matrix from Phylip file</description>
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3 <macros>
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4 <import>macros.xml</import>
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5 </macros>
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6 <expand macro="requirements"/>
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7 <command detect_errors="exit_code">
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8 snv_matrix.pl $phylip
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9 -o $out
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10 </command>
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11 <inputs>
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12 <param name="phylip" type="data" label="Phylip file" format="phylip"/>
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13 </inputs>
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14 <outputs>
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15 <data format="tabular" name="out"/>
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16 </outputs>
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17 <tests>
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18 <test>
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19 <param name="phylip" value="snvalign-13.phy"/>
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20 <output name="out" file="snvalign-13.phy.out"/>
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21 </test>
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22 </tests>
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24 <help>
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25 What it does
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26 ============
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27
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28 Create SNV matrix from Phylip file format
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31 Usage
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32 =====
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34 **Parameters**
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35 - Phylip file: Phylogenetic file (.ph, .phy)
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37 </help>
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38 <expand macro="citations"/>
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39 </tool>