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comparison spades.xml @ 19:9be710099b99 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/spades commit 1e2ff437ec47f8789e2309ee8c940c6451abfa0c"
author iuc
date Mon, 09 May 2022 22:49:43 +0000
parents d2d1df21dfb9
children 78ced22d09a2
comparison
equal deleted inserted replaced
18:dd7ad84f3943 19:9be710099b99
1 <tool id="spades" name="SPAdes" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.01"> 1 <tool id="spades" name="SPAdes" version="@TOOL_VERSION@+galaxy1" profile="20.01">
2 <description>genome assembler for genomes of regular and single-cell projects</description> 2 <description>genome assembler for genomes of regular and single-cell projects</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements"/> 6 <expand macro="requirements"/>
30 ## additional reads 30 ## additional reads
31 @NANOPORE_PACBIO@ 31 @NANOPORE_PACBIO@
32 @SANGER@ 32 @SANGER@
33 @CONTIGS@ 33 @CONTIGS@
34 ## parameter 34 ## parameter
35 --cov-cutoff $cov_cond.cov_cutoff 35 #if $cov_cond.cov_cutoff == 'value':
36 --cov-cutoff $cov_cond.manual
37 #else:
38 --cov-cutoff $cov_cond.cov_cutoff
39 #end if
36 @KMER@ 40 @KMER@
37 @PIPELINE_OPTIONS@ 41 @PIPELINE_OPTIONS@
38 @PHREDOFFSET@ 42 @PHREDOFFSET@
39 43
40 ## postprocessing 44 ## postprocessing