Mercurial > repos > nml > spades

diff spades.xml @ 19:9be710099b99 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/spades commit 1e2ff437ec47f8789e2309ee8c940c6451abfa0c"
author iuc
date Mon, 09 May 2022 22:49:43 +0000
parents d2d1df21dfb9
children 78ced22d09a2
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--- a/spades.xml	Mon Feb 21 10:17:34 2022 +0000
+++ b/spades.xml	Mon May 09 22:49:43 2022 +0000
@@ -1,4 +1,4 @@
-<tool id="spades" name="SPAdes" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.01">
+<tool id="spades" name="SPAdes" version="@TOOL_VERSION@+galaxy1" profile="20.01">
     <description>genome assembler for genomes of regular and single-cell projects</description>
     <macros>
         <import>macros.xml</import>
@@ -32,7 +32,11 @@
     @SANGER@
     @CONTIGS@
     ## parameter
-    --cov-cutoff $cov_cond.cov_cutoff
+    #if $cov_cond.cov_cutoff == 'value':
+        --cov-cutoff $cov_cond.manual
+    #else:
+        --cov-cutoff $cov_cond.cov_cutoff
+    #end if
     @KMER@
     @PIPELINE_OPTIONS@
     @PHREDOFFSET@