diff CHANGE @ 0:009c00203195 draft

planemo upload commit 3fd243b12e91a3fe71083376f40e85647c8b892b-dirty
author nml
date Mon, 18 Jan 2016 09:53:28 -0500
parents
children e37014a072e9
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/CHANGE	Mon Jan 18 09:53:28 2016 -0500
@@ -0,0 +1,44 @@
+1.2
+===
+ - Supports SPades 3.6.2
+
+1.1
+===
+ - Supports SPades 3.6.1
+
+1.0
+===
+- Supports SPAdes 3.5.0
+- New MismatchCorrector module.
+- Support for Oxford Nanopore long reads.
+- Support for Lucigen NxMate mate-pair libraries.
+- Possibility to specify coverage cutoff: automatic and manual.
+- CHANGE: Better running time.
+- CHANGE: Improved RAM consumption.
+- CHANGE: High-quality mate-pairs are now assumed to have forward-revers orientation (same as paired-end).
+
+FIX: Fixed FASTG format.
+0.9
+===
+- Supports SPAdes 3.1.1
+- Supports Mate-pair only assembly with high-quality libraries
+- Added support for List Paired Collection for files in a library.
+- Renaming of contig names in scaffolds and contig files if List Paired Collection given
+
+0.7
+===
+(thanks to Nicola Soranzo for fixing these bugs)
+- spades.pl doesn't die when NODE number is 0
+- removed the --rectangles option (will be deprecated in SPAdes 2.6), because it uses a different seqid format
+- switched the --threads parameter to $GALAXY_SLOTS
+- a few minor improvements
+
+0.6
+===
+- Supports SPAdes 2.5.1
+- Disables gzipped output for corrected reads
+- Removes the hack that was necessary to accept .dat files (thanks to SPAdes
+  new input format
+- Adds licensing information
+
+(started at version 0.6)