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annotate CHANGE @ 0:009c00203195 draft

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planemo upload commit 3fd243b12e91a3fe71083376f40e85647c8b892b-dirty
author nml
date Mon, 18 Jan 2016 09:53:28 -0500
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children e37014a072e9
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0
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1 1.2
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2 ===
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3 - Supports SPades 3.6.2
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4
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5 1.1
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6 ===
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7 - Supports SPades 3.6.1
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8
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9 1.0
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10 ===
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11 - Supports SPAdes 3.5.0
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12 - New MismatchCorrector module.
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13 - Support for Oxford Nanopore long reads.
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14 - Support for Lucigen NxMate mate-pair libraries.
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15 - Possibility to specify coverage cutoff: automatic and manual.
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16 - CHANGE: Better running time.
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17 - CHANGE: Improved RAM consumption.
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18 - CHANGE: High-quality mate-pairs are now assumed to have forward-revers orientation (same as paired-end).
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19
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20 FIX: Fixed FASTG format.
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21 0.9
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22 ===
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23 - Supports SPAdes 3.1.1
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24 - Supports Mate-pair only assembly with high-quality libraries
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25 - Added support for List Paired Collection for files in a library.
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26 - Renaming of contig names in scaffolds and contig files if List Paired Collection given
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27
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28 0.7
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29 ===
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30 (thanks to Nicola Soranzo for fixing these bugs)
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31 - spades.pl doesn't die when NODE number is 0
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32 - removed the --rectangles option (will be deprecated in SPAdes 2.6), because it uses a different seqid format
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33 - switched the --threads parameter to $GALAXY_SLOTS
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34 - a few minor improvements
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35
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36 0.6
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37 ===
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38 - Supports SPAdes 2.5.1
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39 - Disables gzipped output for corrected reads
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40 - Removes the hack that was necessary to accept .dat files (thanks to SPAdes
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41 new input format
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42 - Adds licensing information
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43
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44 (started at version 0.6)