Mercurial > repos > nml > staramr

comparison test-data/test1-detailed-summary.tsv @ 9:61a3e97aa865 draft

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"planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/staramr commit 07b1134fbf48f0f94e6060b861651e1ab48cde71"
author nml
date Mon, 30 Sep 2019 12:45:02 -0400
parents f1adc47e017a
children 141afacabcfa
comparison
equal deleted inserted replaced
8:da787fc8b740 9:61a3e97aa865
1 Isolate ID Gene/Plasmid Predicted Phenotype %Identity %Overlap HSP Length/Total Length Contig Start End Accession Data Type 1 Isolate ID Data Data Type Predicted Phenotype %Identity %Overlap HSP Length/Total Length Contig Start End Accession
2 16S-rc_gyrA-rc_beta-lactam.fsa None Plasmid 2 16S-rc_gyrA-rc_beta-lactam.fsa ST- (-) MLST
3 16S-rc_gyrA-rc_beta-lactam.fsa 16S_rrsD (C1065T) spectinomycin 99.94 100.0 1544/1544 16S_rrsD 1604 61 Resistance 3 16S-rc_gyrA-rc_beta-lactam.fsa None Plasmid
4 16S-rc_gyrA-rc_beta-lactam.fsa blaIMP-42 ampicillin, amoxicillin/clavulanic acid, cefoxitin, ceftriaxone, meropenem 99.73 100.0 741/741 16S_rrsD 4381 5121 AB753456 Resistance 4 16S-rc_gyrA-rc_beta-lactam.fsa 16S_rrsD (C1065T) Resistance spectinomycin 99.94 100.0 1544/1544 16S_rrsD 1604 61
5 16S-rc_gyrA-rc_beta-lactam.fsa gyrA (A67P) ciprofloxacin I/R, nalidixic acid 99.96 100.0 2637/2637 16S_rrsD 4317 1681 Resistance 5 16S-rc_gyrA-rc_beta-lactam.fsa blaIMP-42 Resistance ampicillin, amoxicillin/clavulanic acid, cefoxitin, ceftriaxone, meropenem 99.73 100.0 741/741 16S_rrsD 4381 5121 AB753456
6 16S-rc_gyrA-rc_beta-lactam.fsa gyrA (A67P) Resistance ciprofloxacin I/R, nalidixic acid 99.96 100.0 2637/2637 16S_rrsD 4317 1681