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view test-data/test1-detailed-summary.tsv @ 19:3548a93b39c1 draft default tip

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planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/staramr commit b534dcd63f07469e6e24257a0491a8badcbfc95d
author nml
date Wed, 18 Dec 2024 19:43:50 +0000
parents 141afacabcfa
children
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Isolate ID	Data	Data Type	Predicted Phenotype	CGE Predicted Phenotype	%Identity	%Overlap	HSP Length/Total Length	Contig	Start	End	Accession
16S-rc_gyrA-rc_beta-lactam.fsa	ST- (-)	MLST									
16S-rc_gyrA-rc_beta-lactam.fsa	None	Plasmid									
16S-rc_gyrA-rc_beta-lactam.fsa	16S_rrsD (C1065T)	Resistance	spectinomycin	Spectinomycin	99.94	100.0	1544/1544	16S_rrsD	1604	61	
16S-rc_gyrA-rc_beta-lactam.fsa	blaIMP-42	Resistance	ampicillin, amoxicillin/clavulanic acid, cefoxitin, ceftriaxone, meropenem	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefepime, Cefixime, Cefotaxime, Cefoxitin, Ceftazidime, Ertapenem, Imipenem, Meropenem, Piperacillin, Piperacillin+Tazobactam	99.73	100.0	741/741	16S_rrsD	4381	5121	AB753456
16S-rc_gyrA-rc_beta-lactam.fsa	gyrA (A67P)	Resistance	ciprofloxacin I/R, nalidixic acid	Nalidixic acid,Ciprofloxacin	99.96	100.0	2637/2637	16S_rrsD	4317	1681