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planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/staramr commit b534dcd63f07469e6e24257a0491a8badcbfc95d
author nml
date Wed, 18 Dec 2024 19:43:50 +0000
parents 141afacabcfa
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Isolate ID	Quality Module	Genotype	Predicted Phenotype	CGE Predicted Phenotype	Plasmid	Scheme	Sequence Type	Genome Length	N50 value	Number of Contigs Greater Than Or Equal To 300 bp	Quality Module Feedback
16S-rc_gyrA-rc_beta-lactam.fsa	Failed	16S_rrsD (C1065T), blaIMP-42, gyrA (A67P)	spectinomycin, ampicillin, amoxicillin/clavulanic acid, cefoxitin, ceftriaxone, meropenem, ciprofloxacin I/R, nalidixic acid	Spectinomycin, Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefepime, Cefixime, Cefotaxime, Cefoxitin, Ceftazidime, Ertapenem, Imipenem, Meropenem, Piperacillin, Piperacillin+Tazobactam, Nalidixic acid, Ciprofloxacin	None	-	-	5220	5220	1	Genome length is not within the acceptable length range [4000000,6000000] ; N50 value is not greater than the specified minimum value [10000]