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comparison ITSx_db/HMMs/U.hmm @ 0:f82c70f54bd7 draft

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author okorol
date Tue, 24 Mar 2015 12:02:48 -0400
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-1:000000000000 0:f82c70f54bd7
1 HMMER3/b [3.0 | March 2010]
2 NAME 3_End_Eustigmatophyceae_58S_end_long
3 LENG 45
4 ALPH DNA
5 RF no
6 CS no
7 MAP yes
8 DATE Sun Sep 25 01:39:32 2011
9 NSEQ 6
10 EFFN 3.336914
11 CKSUM 3393550359
12 STATS LOCAL MSV -8.0163 0.71932
13 STATS LOCAL VITERBI -7.6944 0.71932
14 STATS LOCAL FORWARD -4.0151 0.71932
15 HMM A C G T
16 m->m m->i m->d i->m i->i d->m d->d
17 COMPO 1.93226 1.59605 1.19721 1.04854
18 1.38629 1.38629 1.38629 1.38629
19 0.03679 4.01402 4.01402 1.46634 0.26236 0.00000 *
20 1 3.43835 0.12958 3.48758 2.83281 1 - -
21 1.38629 1.38629 1.38629 1.38629
22 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
23 2 2.95070 3.59237 0.11666 3.49752 2 - -
24 1.38629 1.38629 1.38629 1.38629
25 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
26 3 3.43835 0.12958 3.48758 2.83281 3 - -
27 1.38629 1.38629 1.38629 1.38629
28 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
29 4 3.09320 2.59806 3.14118 0.17794 4 - -
30 1.38629 1.38629 1.38629 1.38629
31 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
32 5 3.09320 2.59806 3.14118 0.17794 5 - -
33 1.38629 1.38629 1.38629 1.38629
34 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
35 6 3.09320 2.59806 3.14118 0.17794 6 - -
36 1.38629 1.38629 1.38629 1.38629
37 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
38 7 3.43835 0.12958 3.48758 2.83281 7 - -
39 1.38629 1.38629 1.38629 1.38629
40 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
41 8 2.95070 3.59237 0.11666 3.49752 8 - -
42 1.38629 1.38629 1.38629 1.38629
43 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
44 9 2.95070 3.59237 0.11666 3.49752 9 - -
45 1.38629 1.38629 1.38629 1.38629
46 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
47 10 2.95070 3.59237 0.11666 3.49752 10 - -
48 1.38629 1.38629 1.38629 1.38629
49 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
50 11 0.14130 3.38481 2.80488 3.28690 11 - -
51 1.38629 1.38629 1.38629 1.38629
52 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
53 12 3.09320 2.59806 3.14118 0.17794 12 - -
54 1.38629 1.38629 1.38629 1.38629
55 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
56 13 0.14130 3.38481 2.80488 3.28690 13 - -
57 1.38629 1.38629 1.38629 1.38629
58 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
59 14 3.09320 2.59806 3.14118 0.17794 14 - -
60 1.38629 1.38629 1.38629 1.38629
61 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
62 15 2.95070 3.59237 0.11666 3.49752 15 - -
63 1.38629 1.38629 1.38629 1.38629
64 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
65 16 3.43835 0.12958 3.48758 2.83281 16 - -
66 1.38629 1.38629 1.38629 1.38629
67 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
68 17 3.43835 0.12958 3.48758 2.83281 17 - -
69 1.38629 1.38629 1.38629 1.38629
70 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
71 18 3.43835 0.12958 3.48758 2.83281 18 - -
72 1.38629 1.38629 1.38629 1.38629
73 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
74 19 2.95070 3.59237 0.11666 3.49752 19 - -
75 1.38629 1.38629 1.38629 1.38629
76 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
77 20 3.09320 2.59806 3.14118 0.17794 20 - -
78 1.38629 1.38629 1.38629 1.38629
79 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
80 21 3.09320 2.59806 3.14118 0.17794 21 - -
81 1.38629 1.38629 1.38629 1.38629
82 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
83 22 0.14130 3.38481 2.80488 3.28690 22 - -
84 1.38629 1.38629 1.38629 1.38629
85 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
86 23 2.95070 3.59237 0.11666 3.49752 23 - -
87 1.38629 1.38629 1.38629 1.38629
88 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
89 24 3.43835 0.12958 3.48758 2.83281 24 - -
90 1.38629 1.38629 1.38629 1.38629
91 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
92 25 0.14130 3.38481 2.80488 3.28690 25 - -
93 1.38629 1.38629 1.38629 1.38629
94 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
95 26 3.09320 2.59806 3.14118 0.17794 26 - -
96 1.38629 1.38629 1.38629 1.38629
97 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
98 27 2.95070 3.59237 0.11666 3.49752 27 - -
99 1.38629 1.38629 1.38629 1.38629
100 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
101 28 3.09320 2.59806 3.14118 0.17794 28 - -
102 1.38629 1.38629 1.38629 1.38629
103 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
104 29 3.09320 2.59806 3.14118 0.17794 29 - -
105 1.38629 1.38629 1.38629 1.38629
106 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
107 30 3.09320 2.59806 3.14118 0.17794 30 - -
108 1.38629 1.38629 1.38629 1.38629
109 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
110 31 2.95070 3.59237 0.11666 3.49752 31 - -
111 1.38629 1.38629 1.38629 1.38629
112 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
113 32 3.09320 2.59806 3.14118 0.17794 32 - -
114 1.38629 1.38629 1.38629 1.38629
115 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
116 33 3.09320 2.59806 3.14118 0.17794 33 - -
117 1.38629 1.38629 1.38629 1.38629
118 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
119 34 2.95070 3.59237 0.11666 3.49752 34 - -
120 1.38629 1.38629 1.38629 1.38629
121 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
122 35 2.95070 3.59237 0.11666 3.49752 35 - -
123 1.38629 1.38629 1.38629 1.38629
124 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
125 36 0.14130 3.38481 2.80488 3.28690 36 - -
126 1.38629 1.38629 1.38629 1.38629
127 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
128 37 2.95070 3.59237 0.11666 3.49752 37 - -
129 1.38629 1.38629 1.38629 1.38629
130 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
131 38 3.09320 2.59806 3.14118 0.17794 38 - -
132 1.38629 1.38629 1.38629 1.38629
133 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
134 39 2.95070 3.59237 0.11666 3.49752 39 - -
135 1.38629 1.38629 1.38629 1.38629
136 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
137 40 3.09320 2.59806 3.14118 0.17794 40 - -
138 1.38629 1.38629 1.38629 1.38629
139 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
140 41 3.43835 0.12958 3.48758 2.83281 41 - -
141 1.38629 1.38629 1.38629 1.38629
142 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
143 42 3.09320 2.59806 3.14118 0.17794 42 - -
144 1.38629 1.38629 1.38629 1.38629
145 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
146 43 2.95070 3.59237 0.11666 3.49752 43 - -
147 1.38629 1.38629 1.38629 1.38629
148 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
149 44 3.09320 2.59806 3.14118 0.17794 44 - -
150 1.38629 1.38629 1.38629 1.38629
151 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
152 45 3.09320 2.59806 3.14118 0.17794 45 - -
153 1.38629 1.38629 1.38629 1.38629
154 0.01856 3.99580 * 1.46634 0.26236 0.00000 *
155 //
156 HMMER3/b [3.0 | March 2010]
157 NAME 2_5.8_Eustigmatophyceae_58S_start_long
158 LENG 45
159 ALPH DNA
160 RF no
161 CS no
162 MAP yes
163 DATE Sun Sep 25 01:34:03 2011
164 NSEQ 6
165 EFFN 3.213867
166 CKSUM 1922503689
167 STATS LOCAL MSV -8.1335 0.71933
168 STATS LOCAL VITERBI -7.6652 0.71933
169 STATS LOCAL FORWARD -4.1546 0.71933
170 HMM A C G T
171 m->m m->i m->d i->m i->i d->m d->d
172 COMPO 1.22065 1.26567 1.52763 1.58055
173 1.38629 1.38629 1.38629 1.38629
174 0.03764 3.99155 3.99155 1.46634 0.26236 0.00000 *
175 1 3.39218 0.13520 3.44336 2.79911 1 - -
176 1.38629 1.38629 1.38629 1.38629
177 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
178 2 0.14667 3.34479 2.77882 3.24311 2 - -
179 1.38629 1.38629 1.38629 1.38629
180 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
181 3 0.14667 3.34479 2.77882 3.24311 3 - -
182 1.38629 1.38629 1.38629 1.38629
183 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
184 4 3.39218 0.13520 3.44336 2.79911 4 - -
185 1.38629 1.38629 1.38629 1.38629
186 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
187 5 3.05294 2.57242 3.10245 0.18453 5 - -
188 1.38629 1.38629 1.38629 1.38629
189 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
190 6 3.05294 2.57242 3.10245 0.18453 6 - -
191 1.38629 1.38629 1.38629 1.38629
192 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
193 7 3.05294 2.57242 3.10245 0.18453 7 - -
194 1.38629 1.38629 1.38629 1.38629
195 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
196 8 3.39218 0.13520 3.44336 2.79911 8 - -
197 1.38629 1.38629 1.38629 1.38629
198 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
199 9 0.14667 3.34479 2.77882 3.24311 9 - -
200 1.38629 1.38629 1.38629 1.38629
201 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
202 10 2.92262 3.55163 0.12119 3.45259 10 - -
203 1.38629 1.38629 1.38629 1.38629
204 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
205 11 3.39218 0.13520 3.44336 2.79911 11 - -
206 1.38629 1.38629 1.38629 1.38629
207 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
208 12 0.14667 3.34479 2.77882 3.24311 12 - -
209 1.38629 1.38629 1.38629 1.38629
210 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
211 13 0.14667 3.34479 2.77882 3.24311 13 - -
212 1.38629 1.38629 1.38629 1.38629
213 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
214 14 3.39218 0.13520 3.44336 2.79911 14 - -
215 1.38629 1.38629 1.38629 1.38629
216 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
217 15 2.92262 3.55163 0.12119 3.45259 15 - -
218 1.38629 1.38629 1.38629 1.38629
219 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
220 16 2.92262 3.55163 0.12119 3.45259 16 - -
221 1.38629 1.38629 1.38629 1.38629
222 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
223 17 0.14667 3.34479 2.77882 3.24311 17 - -
224 1.38629 1.38629 1.38629 1.38629
225 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
226 18 3.05294 2.57242 3.10245 0.18453 18 - -
227 1.38629 1.38629 1.38629 1.38629
228 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
229 19 2.92262 3.55163 0.12119 3.45259 19 - -
230 1.38629 1.38629 1.38629 1.38629
231 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
232 20 3.05294 2.57242 3.10245 0.18453 20 - -
233 1.38629 1.38629 1.38629 1.38629
234 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
235 21 3.39218 0.13520 3.44336 2.79911 21 - -
236 1.38629 1.38629 1.38629 1.38629
237 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
238 22 3.05294 2.57242 3.10245 0.18453 22 - -
239 1.38629 1.38629 1.38629 1.38629
240 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
241 23 3.05294 2.57242 3.10245 0.18453 23 - -
242 1.38629 1.38629 1.38629 1.38629
243 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
244 24 2.92262 3.55163 0.12119 3.45259 24 - -
245 1.38629 1.38629 1.38629 1.38629
246 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
247 25 2.92262 3.55163 0.12119 3.45259 25 - -
248 1.38629 1.38629 1.38629 1.38629
249 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
250 26 3.39218 0.13520 3.44336 2.79911 26 - -
251 1.38629 1.38629 1.38629 1.38629
252 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
253 27 3.05294 2.57242 3.10245 0.18453 27 - -
254 1.38629 1.38629 1.38629 1.38629
255 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
256 28 3.39218 0.13520 3.44336 2.79911 28 - -
257 1.38629 1.38629 1.38629 1.38629
258 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
259 29 3.39218 0.13520 3.44336 2.79911 29 - -
260 1.38629 1.38629 1.38629 1.38629
261 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
262 30 3.39218 0.13520 3.44336 2.79911 30 - -
263 1.38629 1.38629 1.38629 1.38629
264 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
265 31 0.14667 3.34479 2.77882 3.24311 31 - -
266 1.38629 1.38629 1.38629 1.38629
267 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
268 32 3.39218 0.13520 3.44336 2.79911 32 - -
269 1.38629 1.38629 1.38629 1.38629
270 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
271 33 0.14667 3.34479 2.77882 3.24311 33 - -
272 1.38629 1.38629 1.38629 1.38629
273 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
274 34 0.14667 3.34479 2.77882 3.24311 34 - -
275 1.38629 1.38629 1.38629 1.38629
276 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
277 35 3.39218 0.13520 3.44336 2.79911 35 - -
278 1.38629 1.38629 1.38629 1.38629
279 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
280 36 2.92262 3.55163 0.12119 3.45259 36 - -
281 1.38629 1.38629 1.38629 1.38629
282 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
283 37 0.14667 3.34479 2.77882 3.24311 37 - -
284 1.38629 1.38629 1.38629 1.38629
285 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
286 38 3.05294 2.57242 3.10245 0.18453 38 - -
287 1.38629 1.38629 1.38629 1.38629
288 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
289 39 2.92262 3.55163 0.12119 3.45259 39 - -
290 1.38629 1.38629 1.38629 1.38629
291 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
292 40 0.14667 3.34479 2.77882 3.24311 40 - -
293 1.38629 1.38629 1.38629 1.38629
294 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
295 41 0.14667 3.34479 2.77882 3.24311 41 - -
296 1.38629 1.38629 1.38629 1.38629
297 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
298 42 2.92262 3.55163 0.12119 3.45259 42 - -
299 1.38629 1.38629 1.38629 1.38629
300 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
301 43 0.14667 3.34479 2.77882 3.24311 43 - -
302 1.38629 1.38629 1.38629 1.38629
303 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
304 44 0.14667 3.34479 2.77882 3.24311 44 - -
305 1.38629 1.38629 1.38629 1.38629
306 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
307 45 3.39218 0.13520 3.44336 2.79911 45 - -
308 1.38629 1.38629 1.38629 1.38629
309 0.01900 3.97290 * 1.46634 0.26236 0.00000 *
310 //
311 HMMER3/b [3.0 | March 2010]
312 NAME 4_LSU_Eustigmatophyceae_4_LSU_start_long
313 LENG 45
314 ALPH DNA
315 RF no
316 CS no
317 MAP yes
318 DATE Sun Sep 25 01:43:21 2011
319 NSEQ 5
320 EFFN 3.315430
321 CKSUM 2420342418
322 STATS LOCAL MSV -8.0313 0.71931
323 STATS LOCAL VITERBI -7.5738 0.71931
324 STATS LOCAL FORWARD -3.9568 0.71931
325 HMM A C G T
326 m->m m->i m->d i->m i->i d->m d->d
327 COMPO 1.23266 1.26091 1.60118 1.49866
328 1.38629 1.38629 1.38629 1.38629
329 0.03694 4.01013 4.01013 1.46634 0.26236 0.00000 *
330 1 3.08626 2.59365 3.13451 0.17906 1 - -
331 1.38629 1.38629 1.38629 1.38629
332 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
333 2 3.08626 2.59365 3.13451 0.17906 2 - -
334 1.38629 1.38629 1.38629 1.38629
335 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
336 3 3.43043 0.13053 3.48000 2.82705 3 - -
337 1.38629 1.38629 1.38629 1.38629
338 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
339 4 2.94591 3.58540 0.11742 3.48982 4 - -
340 1.38629 1.38629 1.38629 1.38629
341 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
342 5 2.94591 3.58540 0.11742 3.48982 5 - -
343 1.38629 1.38629 1.38629 1.38629
344 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
345 6 0.14220 3.37794 2.80041 3.27938 6 - -
346 1.38629 1.38629 1.38629 1.38629
347 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
348 7 3.43043 0.13053 3.48000 2.82705 7 - -
349 1.38629 1.38629 1.38629 1.38629
350 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
351 8 3.43043 0.13053 3.48000 2.82705 8 - -
352 1.38629 1.38629 1.38629 1.38629
353 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
354 9 3.08626 2.59365 3.13451 0.17906 9 - -
355 1.38629 1.38629 1.38629 1.38629
356 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
357 10 3.43043 0.13053 3.48000 2.82705 10 - -
358 1.38629 1.38629 1.38629 1.38629
359 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
360 11 3.43043 0.13053 3.48000 2.82705 11 - -
361 1.38629 1.38629 1.38629 1.38629
362 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
363 12 0.14220 3.37794 2.80041 3.27938 12 - -
364 1.38629 1.38629 1.38629 1.38629
365 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
366 13 0.14220 3.37794 2.80041 3.27938 13 - -
367 1.38629 1.38629 1.38629 1.38629
368 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
369 14 3.08626 2.59365 3.13451 0.17906 14 - -
370 1.38629 1.38629 1.38629 1.38629
371 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
372 15 3.43043 0.13053 3.48000 2.82705 15 - -
373 1.38629 1.38629 1.38629 1.38629
374 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
375 16 0.14220 3.37794 2.80041 3.27938 16 - -
376 1.38629 1.38629 1.38629 1.38629
377 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
378 17 0.14220 3.37794 2.80041 3.27938 17 - -
379 1.38629 1.38629 1.38629 1.38629
380 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
381 18 2.94591 3.58540 0.11742 3.48982 18 - -
382 1.38629 1.38629 1.38629 1.38629
383 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
384 19 3.43043 0.13053 3.48000 2.82705 19 - -
385 1.38629 1.38629 1.38629 1.38629
386 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
387 20 0.14220 3.37794 2.80041 3.27938 20 - -
388 1.38629 1.38629 1.38629 1.38629
389 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
390 21 0.14220 3.37794 2.80041 3.27938 21 - -
391 1.38629 1.38629 1.38629 1.38629
392 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
393 22 2.94591 3.58540 0.11742 3.48982 22 - -
394 1.38629 1.38629 1.38629 1.38629
395 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
396 23 2.94591 3.58540 0.11742 3.48982 23 - -
397 1.38629 1.38629 1.38629 1.38629
398 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
399 24 3.43043 0.13053 3.48000 2.82705 24 - -
400 1.38629 1.38629 1.38629 1.38629
401 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
402 25 3.08626 2.59365 3.13451 0.17906 25 - -
403 1.38629 1.38629 1.38629 1.38629
404 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
405 26 0.14220 3.37794 2.80041 3.27938 26 - -
406 1.38629 1.38629 1.38629 1.38629
407 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
408 27 3.43043 0.13053 3.48000 2.82705 27 - -
409 1.38629 1.38629 1.38629 1.38629
410 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
411 28 3.43043 0.13053 3.48000 2.82705 28 - -
412 1.38629 1.38629 1.38629 1.38629
413 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
414 29 3.43043 0.13053 3.48000 2.82705 29 - -
415 1.38629 1.38629 1.38629 1.38629
416 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
417 30 2.94591 3.58540 0.11742 3.48982 30 - -
418 1.38629 1.38629 1.38629 1.38629
419 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
420 31 3.43043 0.13053 3.48000 2.82705 31 - -
421 1.38629 1.38629 1.38629 1.38629
422 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
423 32 3.08626 2.59365 3.13451 0.17906 32 - -
424 1.38629 1.38629 1.38629 1.38629
425 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
426 33 2.94591 3.58540 0.11742 3.48982 33 - -
427 1.38629 1.38629 1.38629 1.38629
428 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
429 34 0.33543 2.85734 1.81858 2.72885 34 - -
430 1.38629 1.38629 1.38629 1.38629
431 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
432 35 0.14220 3.37794 2.80041 3.27938 35 - -
433 1.38629 1.38629 1.38629 1.38629
434 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
435 36 3.08626 2.59365 3.13451 0.17906 36 - -
436 1.38629 1.38629 1.38629 1.38629
437 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
438 37 3.08626 2.59365 3.13451 0.17906 37 - -
439 1.38629 1.38629 1.38629 1.38629
440 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
441 38 3.08626 2.59365 3.13451 0.17906 38 - -
442 1.38629 1.38629 1.38629 1.38629
443 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
444 39 0.14220 3.37794 2.80041 3.27938 39 - -
445 1.38629 1.38629 1.38629 1.38629
446 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
447 40 0.14220 3.37794 2.80041 3.27938 40 - -
448 1.38629 1.38629 1.38629 1.38629
449 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
450 41 2.94591 3.58540 0.11742 3.48982 41 - -
451 1.38629 1.38629 1.38629 1.38629
452 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
453 42 3.43043 0.13053 3.48000 2.82705 42 - -
454 1.38629 1.38629 1.38629 1.38629
455 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
456 43 0.14220 3.37794 2.80041 3.27938 43 - -
457 1.38629 1.38629 1.38629 1.38629
458 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
459 44 3.08626 2.59365 3.13451 0.17906 44 - -
460 1.38629 1.38629 1.38629 1.38629
461 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
462 45 0.14220 3.37794 2.80041 3.27938 45 - -
463 1.38629 1.38629 1.38629 1.38629
464 0.01864 3.99184 * 1.46634 0.26236 0.00000 *
465 //
466 HMMER3/b [3.0 | March 2010]
467 NAME 1_SSU_Eustigmatophyceae_1_SSU_end_long
468 LENG 45
469 ALPH DNA
470 RF no
471 CS no
472 MAP yes
473 DATE Thu Jan 19 22:34:10 2012
474 NSEQ 6
475 EFFN 3.225586
476 CKSUM 778367950
477 STATS LOCAL MSV -8.0048 0.71933
478 STATS LOCAL VITERBI -7.6831 0.71933
479 STATS LOCAL FORWARD -4.1090 0.71933
480 HMM A C G T
481 m->m m->i m->d i->m i->i d->m d->d
482 COMPO 1.27189 1.62645 1.24659 1.44567
483 1.38629 1.38629 1.38629 1.38629
484 0.03756 3.99371 3.99371 1.46634 0.26236 0.00000 *
485 1 0.14614 3.34867 2.78135 3.24736 1 - -
486 1.38629 1.38629 1.38629 1.38629
487 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
488 2 2.92536 3.55560 0.12074 3.45696 2 - -
489 1.38629 1.38629 1.38629 1.38629
490 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
491 3 3.05683 2.57491 3.10619 0.18389 3 - -
492 1.38629 1.38629 1.38629 1.38629
493 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
494 4 3.39667 0.13464 3.44765 2.80239 4 - -
495 1.38629 1.38629 1.38629 1.38629
496 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
497 5 2.92536 3.55560 0.12074 3.45696 5 - -
498 1.38629 1.38629 1.38629 1.38629
499 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
500 6 3.05683 2.57491 3.10619 0.18389 6 - -
501 1.38629 1.38629 1.38629 1.38629
502 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
503 7 0.14614 3.34867 2.78135 3.24736 7 - -
504 1.38629 1.38629 1.38629 1.38629
505 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
506 8 0.14614 3.34867 2.78135 3.24736 8 - -
507 1.38629 1.38629 1.38629 1.38629
508 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
509 9 3.39667 0.13464 3.44765 2.80239 9 - -
510 1.38629 1.38629 1.38629 1.38629
511 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
512 10 0.14614 3.34867 2.78135 3.24736 10 - -
513 1.38629 1.38629 1.38629 1.38629
514 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
515 11 0.14614 3.34867 2.78135 3.24736 11 - -
516 1.38629 1.38629 1.38629 1.38629
517 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
518 12 2.92536 3.55560 0.12074 3.45696 12 - -
519 1.38629 1.38629 1.38629 1.38629
520 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
521 13 2.92536 3.55560 0.12074 3.45696 13 - -
522 1.38629 1.38629 1.38629 1.38629
523 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
524 14 3.05683 2.57491 3.10619 0.18389 14 - -
525 1.38629 1.38629 1.38629 1.38629
526 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
527 15 3.05683 2.57491 3.10619 0.18389 15 - -
528 1.38629 1.38629 1.38629 1.38629
529 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
530 16 3.05683 2.57491 3.10619 0.18389 16 - -
531 1.38629 1.38629 1.38629 1.38629
532 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
533 17 3.39667 0.13464 3.44765 2.80239 17 - -
534 1.38629 1.38629 1.38629 1.38629
535 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
536 18 3.39667 0.13464 3.44765 2.80239 18 - -
537 1.38629 1.38629 1.38629 1.38629
538 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
539 19 2.92536 3.55560 0.12074 3.45696 19 - -
540 1.38629 1.38629 1.38629 1.38629
541 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
542 20 3.05683 2.57491 3.10619 0.18389 20 - -
543 1.38629 1.38629 1.38629 1.38629
544 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
545 21 0.14614 3.34867 2.78135 3.24736 21 - -
546 1.38629 1.38629 1.38629 1.38629
547 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
548 22 2.92536 3.55560 0.12074 3.45696 22 - -
549 1.38629 1.38629 1.38629 1.38629
550 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
551 23 2.92536 3.55560 0.12074 3.45696 23 - -
552 1.38629 1.38629 1.38629 1.38629
553 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
554 24 3.05683 2.57491 3.10619 0.18389 24 - -
555 1.38629 1.38629 1.38629 1.38629
556 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
557 25 2.92536 3.55560 0.12074 3.45696 25 - -
558 1.38629 1.38629 1.38629 1.38629
559 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
560 26 0.14614 3.34867 2.78135 3.24736 26 - -
561 1.38629 1.38629 1.38629 1.38629
562 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
563 27 0.14614 3.34867 2.78135 3.24736 27 - -
564 1.38629 1.38629 1.38629 1.38629
565 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
566 28 3.39667 0.13464 3.44765 2.80239 28 - -
567 1.38629 1.38629 1.38629 1.38629
568 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
569 29 3.39667 0.13464 3.44765 2.80239 29 - -
570 1.38629 1.38629 1.38629 1.38629
571 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
572 30 3.05683 2.57491 3.10619 0.18389 30 - -
573 1.38629 1.38629 1.38629 1.38629
574 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
575 31 2.92536 3.55560 0.12074 3.45696 31 - -
576 1.38629 1.38629 1.38629 1.38629
577 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
578 32 3.39667 0.13464 3.44765 2.80239 32 - -
579 1.38629 1.38629 1.38629 1.38629
580 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
581 33 2.92536 3.55560 0.12074 3.45696 33 - -
582 1.38629 1.38629 1.38629 1.38629
583 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
584 34 2.92536 3.55560 0.12074 3.45696 34 - -
585 1.38629 1.38629 1.38629 1.38629
586 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
587 35 0.14614 3.34867 2.78135 3.24736 35 - -
588 1.38629 1.38629 1.38629 1.38629
589 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
590 36 0.14614 3.34867 2.78135 3.24736 36 - -
591 1.38629 1.38629 1.38629 1.38629
592 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
593 37 2.92536 3.55560 0.12074 3.45696 37 - -
594 1.38629 1.38629 1.38629 1.38629
595 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
596 38 2.92536 3.55560 0.12074 3.45696 38 - -
597 1.38629 1.38629 1.38629 1.38629
598 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
599 39 0.14614 3.34867 2.78135 3.24736 39 - -
600 1.38629 1.38629 1.38629 1.38629
601 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
602 40 3.05683 2.57491 3.10619 0.18389 40 - -
603 1.38629 1.38629 1.38629 1.38629
604 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
605 41 3.39667 0.13464 3.44765 2.80239 41 - -
606 1.38629 1.38629 1.38629 1.38629
607 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
608 42 0.14614 3.34867 2.78135 3.24736 42 - -
609 1.38629 1.38629 1.38629 1.38629
610 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
611 43 3.05683 2.57491 3.10619 0.18389 43 - -
612 1.38629 1.38629 1.38629 1.38629
613 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
614 44 3.05683 2.57491 3.10619 0.18389 44 - -
615 1.38629 1.38629 1.38629 1.38629
616 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
617 45 0.14614 3.34867 2.78135 3.24736 45 - -
618 1.38629 1.38629 1.38629 1.38629
619 0.01896 3.97511 * 1.46634 0.26236 0.00000 *
620 //