Mercurial > repos > okorol > itsx
diff ITSx_db/HMMs/R.hmm @ 0:f82c70f54bd7 draft
Uploaded
| author | okorol |
|---|---|
| date | Tue, 24 Mar 2015 12:02:48 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/ITSx_db/HMMs/R.hmm Tue Mar 24 12:02:48 2015 -0400 @@ -0,0 +1,6355 @@ +HMMER3/b [3.0 | March 2010] +NAME 3_End_Rhizaria_58S_end_eight_long +LENG 45 +ALPH DNA +RF no +CS no +MAP yes +DATE Fri Jan 20 15:33:02 2012 +NSEQ 2 +EFFN 2.000000 +CKSUM 1899220078 +STATS LOCAL MSV -7.5314 0.72773 +STATS LOCAL VITERBI -8.2053 0.72773 +STATS LOCAL FORWARD -3.4398 0.72773 +HMM A C G T + m->m m->i m->d i->m i->i d->m d->d + COMPO 1.39561 1.53003 1.21055 1.43652 + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * + 1 2.57915 2.25909 2.64442 0.28946 1 - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 2 2.81865 0.23582 2.88868 2.35662 2 - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 3 2.57915 2.25909 2.64442 0.28946 3 - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 4 0.23862 2.84929 2.43386 2.70756 4 - 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- + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 45 2.57915 2.25909 2.64442 0.28946 45 - - + 1.38629 1.38629 1.38629 1.38629 + 0.02469 3.71357 * 1.46634 0.26236 0.00000 * +// +HMMER3/b [3.0 | March 2010] +NAME 3_End_Rhizaria_58S_end_five_long +LENG 45 +ALPH DNA +RF no +CS no +MAP yes +DATE Fri Jan 20 15:32:14 2012 +NSEQ 44 +EFFN 3.789307 +CKSUM 2492145104 +STATS LOCAL MSV -6.9952 0.71932 +STATS LOCAL VITERBI -7.7147 0.71932 +STATS LOCAL FORWARD -4.1076 0.71932 +HMM A C G T + m->m m->i m->d i->m i->i d->m d->d + COMPO 1.52743 1.25061 1.45063 1.33883 + 1.38629 1.38629 1.38629 1.38629 + 0.03396 4.09256 4.09256 1.46634 0.26236 0.00000 * + 1 0.12490 3.51867 2.89120 3.43374 1 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547 + 2 3.23058 2.68521 3.27322 0.15739 2 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547 + 3 3.04180 3.72624 0.10307 3.64571 3 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547 + 4 3.59175 0.11278 3.63422 2.94315 4 - 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- + 1.38629 1.38629 1.38629 1.38629 + 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547 + 45 3.23058 2.68521 3.27322 0.15739 45 - - + 1.38629 1.38629 1.38629 1.38629 + 0.01713 4.07572 * 1.46634 0.26236 0.00000 * +// +HMMER3/b [3.0 | March 2010] +NAME 3_End_Rhizaria_58S_end_four_long +LENG 45 +ALPH DNA +RF no +CS no +MAP yes +DATE Fri Jan 20 15:32:04 2012 +NSEQ 2 +EFFN 2.000000 +CKSUM 2834967617 +STATS LOCAL MSV -7.4096 0.72847 +STATS LOCAL VITERBI -8.2704 0.72847 +STATS LOCAL FORWARD -3.1984 0.72847 +HMM A C G T + m->m m->i m->d i->m i->i d->m d->d + COMPO 1.73203 1.50350 1.26657 1.14279 + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * + 1 0.23862 2.84929 2.43386 2.70756 1 - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 2 2.81865 0.23582 2.88868 2.35662 2 - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 3 2.53331 3.02441 0.20344 2.88069 3 - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 4 2.81865 0.23582 2.88868 2.35662 4 - 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- + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 45 2.81865 0.23582 2.88868 2.35662 45 - - + 1.38629 1.38629 1.38629 1.38629 + 0.02469 3.71357 * 1.46634 0.26236 0.00000 * +// +HMMER3/b [3.0 | March 2010] +NAME 2_5.8_Rhizaria_58S_start_ten_long +LENG 45 +ALPH DNA +RF no +CS no +MAP yes +DATE Sat Jan 7 01:38:08 2012 +NSEQ 221 +EFFN 3.469986 +CKSUM 3178722947 +STATS LOCAL MSV -7.3549 0.71932 +STATS LOCAL VITERBI -7.7369 0.71932 +STATS LOCAL FORWARD -4.0992 0.71932 +HMM A C G T + m->m m->i m->d i->m i->i d->m d->d + COMPO 1.63448 1.53575 1.24649 1.19687 + 1.38629 1.38629 1.38629 1.38629 + 0.03591 4.03777 4.03777 1.46634 0.26236 0.00000 * + 1 0.18763 2.92286 2.65754 3.05390 1 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547 + 2 2.69988 0.30745 2.22941 2.40931 2 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547 + 3 3.13531 2.62481 3.18166 0.17133 3 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547 + 4 2.86894 3.58577 0.12204 3.49300 4 - 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