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view ITSx_db/HMMs/R.hmm @ 0:f82c70f54bd7 draft
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| author | okorol |
|---|---|
| date | Tue, 24 Mar 2015 12:02:48 -0400 |
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HMMER3/b [3.0 | March 2010] NAME 3_End_Rhizaria_58S_end_eight_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 15:33:02 2012 NSEQ 2 EFFN 2.000000 CKSUM 1899220078 STATS LOCAL MSV -7.5314 0.72773 STATS LOCAL VITERBI -8.2053 0.72773 STATS LOCAL FORWARD -3.4398 0.72773 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.39561 1.53003 1.21055 1.43652 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.57915 2.25909 2.64442 0.28946 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.57915 2.25909 2.64442 0.28946 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 0.23862 2.84929 2.43386 2.70756 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.57915 2.25909 2.64442 0.28946 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.57915 2.25909 2.64442 0.28946 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.81865 0.23582 2.88868 2.35662 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.81865 0.23582 2.88868 2.35662 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.23862 2.84929 2.43386 2.70756 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.81865 0.23582 2.88868 2.35662 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 0.23862 2.84929 2.43386 2.70756 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.23862 2.84929 2.43386 2.70756 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 0.23862 2.84929 2.43386 2.70756 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.57915 2.25909 2.64442 0.28946 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.23862 2.84929 2.43386 2.70756 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.53331 3.02441 0.20344 2.88069 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.57915 2.25909 2.64442 0.28946 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.53331 3.02441 0.20344 2.88069 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.81865 0.23582 2.88868 2.35662 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.53331 3.02441 0.20344 2.88069 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53331 3.02441 0.20344 2.88069 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.81865 0.23582 2.88868 2.35662 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.53331 3.02441 0.20344 2.88069 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.53331 3.02441 0.20344 2.88069 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.57915 2.25909 2.64442 0.28946 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Rhizaria_58S_end_five_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 15:32:14 2012 NSEQ 44 EFFN 3.789307 CKSUM 2492145104 STATS LOCAL MSV -6.9952 0.71932 STATS LOCAL VITERBI -7.7147 0.71932 STATS LOCAL FORWARD -4.1076 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.52743 1.25061 1.45063 1.33883 1.38629 1.38629 1.38629 1.38629 0.03396 4.09256 4.09256 1.46634 0.26236 0.00000 * 1 0.12490 3.51867 2.89120 3.43374 1 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547 2 3.23058 2.68521 3.27322 0.15739 2 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547 3 3.04180 3.72624 0.10307 3.64571 3 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547 4 3.59175 0.11278 3.63422 2.94315 4 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547 5 0.12490 3.51867 2.89120 3.43374 5 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547 6 0.14815 3.42758 2.66373 3.33692 6 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547 7 0.12490 3.51867 2.89120 3.43374 7 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547 8 3.23058 2.68521 3.27322 0.15739 8 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547 9 2.82736 1.80315 2.88647 0.32812 9 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547 10 3.04180 3.72624 0.10307 3.64571 10 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547 11 3.59175 0.11278 3.63422 2.94315 11 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547 12 3.04180 3.72624 0.10307 3.64571 12 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547 13 3.59175 0.11278 3.63422 2.94315 13 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547 14 3.59175 0.11278 3.63422 2.94315 14 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547 15 3.04180 3.72624 0.10307 3.64571 15 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547 16 3.59175 0.11278 3.63422 2.94315 16 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547 17 2.50841 1.08668 2.57840 0.68246 17 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547 18 0.12490 3.51867 2.89120 3.43374 18 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547 19 3.04180 3.72624 0.10307 3.64571 19 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547 20 1.90623 0.38196 2.63636 2.33078 20 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547 21 3.59175 0.11278 3.63422 2.94315 21 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547 22 2.80206 3.62415 0.12382 3.53678 22 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547 23 2.80142 3.62384 0.12389 3.53646 23 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547 24 3.59175 0.11278 3.63422 2.94315 24 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547 25 0.12490 3.51867 2.89120 3.43374 25 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547 26 3.23058 2.68521 3.27322 0.15739 26 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547 27 3.04180 3.72624 0.10307 3.64571 27 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547 28 3.59175 0.11278 3.63422 2.94315 28 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547 29 3.23058 2.68521 3.27322 0.15739 29 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547 30 3.23058 2.68521 3.27322 0.15739 30 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547 31 3.59175 0.11278 3.63422 2.94315 31 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547 32 3.59175 0.11278 3.63422 2.94315 32 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547 33 3.23058 2.68521 3.27322 0.15739 33 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547 34 3.23058 2.68521 3.27322 0.15739 34 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547 35 3.04180 3.72624 0.10307 3.64571 35 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547 36 0.12490 3.51867 2.89120 3.43374 36 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547 37 3.04180 3.72624 0.10307 3.64571 37 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547 38 0.12490 3.51867 2.89120 3.43374 38 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547 39 0.12490 3.51867 2.89120 3.43374 39 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547 40 3.46796 0.13776 3.51501 2.69173 40 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547 41 2.93556 0.30373 2.99948 1.83868 41 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547 42 3.23058 2.68521 3.27322 0.15739 42 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547 43 3.23058 2.68521 3.27322 0.15739 43 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547 44 1.78643 2.34733 2.54280 0.41829 44 - - 1.38629 1.38629 1.38629 1.38629 0.03396 4.09256 4.09256 1.46634 0.26236 1.09861 0.40547 45 3.23058 2.68521 3.27322 0.15739 45 - - 1.38629 1.38629 1.38629 1.38629 0.01713 4.07572 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Rhizaria_58S_end_four_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 15:32:04 2012 NSEQ 2 EFFN 2.000000 CKSUM 2834967617 STATS LOCAL MSV -7.4096 0.72847 STATS LOCAL VITERBI -8.2704 0.72847 STATS LOCAL FORWARD -3.1984 0.72847 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.73203 1.50350 1.26657 1.14279 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 0.23862 2.84929 2.43386 2.70756 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.53331 3.02441 0.20344 2.88069 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 0.23862 2.84929 2.43386 2.70756 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.23862 2.84929 2.43386 2.70756 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.53331 3.02441 0.20344 2.88069 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.57915 2.25909 2.64442 0.28946 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.57915 2.25909 2.64442 0.28946 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.81865 0.23582 2.88868 2.35662 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.53331 3.02441 0.20344 2.88069 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.81865 0.23582 2.88868 2.35662 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.81865 0.23582 2.88868 2.35662 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.57915 2.25909 2.64442 0.28946 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.81865 0.23582 2.88868 2.35662 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.57915 2.25909 2.64442 0.28946 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.57915 2.25909 2.64442 0.28946 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.53331 3.02441 0.20344 2.88069 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.23862 2.84929 2.43386 2.70756 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.57915 2.25909 2.64442 0.28946 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.57915 2.25909 2.64442 0.28946 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53331 3.02441 0.20344 2.88069 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.53331 3.02441 0.20344 2.88069 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.57915 2.25909 2.64442 0.28946 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.57915 2.25909 2.64442 0.28946 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Rhizaria_58S_end_one_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 15:31:41 2012 NSEQ 11 EFFN 3.300537 CKSUM 3132885964 STATS LOCAL MSV -8.1322 0.71932 STATS LOCAL VITERBI -7.7747 0.71932 STATS LOCAL FORWARD -3.9845 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 2.06390 1.19196 1.27025 1.24252 1.38629 1.38629 1.38629 1.38629 0.03704 4.00743 4.00743 1.46634 0.26236 0.00000 * 1 2.94256 3.58053 0.11795 3.48445 1 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547 2 3.42491 0.13119 3.47471 2.82302 2 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547 3 3.08143 2.59057 3.12986 0.17984 3 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547 4 3.42491 0.13119 3.47471 2.82302 4 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547 5 3.42491 0.13119 3.47471 2.82302 5 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547 6 2.94256 3.58053 0.11795 3.48445 6 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547 7 3.08143 2.59057 3.12986 0.17984 7 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547 8 0.14284 3.37315 2.79730 3.27414 8 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547 9 2.94256 3.58053 0.11795 3.48445 9 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547 10 2.94256 3.58053 0.11795 3.48445 10 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547 11 3.08143 2.59057 3.12986 0.17984 11 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547 12 2.94256 3.58053 0.11795 3.48445 12 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547 13 3.08143 2.59057 3.12986 0.17984 13 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547 14 3.42491 0.13119 3.47471 2.82302 14 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547 15 3.42491 0.13119 3.47471 2.82302 15 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547 16 3.42491 0.13119 3.47471 2.82302 16 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547 17 3.42491 0.13119 3.47471 2.82302 17 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547 18 3.08143 2.59057 3.12986 0.17984 18 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547 19 3.08143 2.59057 3.12986 0.17984 19 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547 20 2.94256 3.58053 0.11795 3.48445 20 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547 21 2.94256 3.58053 0.11795 3.48445 21 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547 22 0.14284 3.37315 2.79730 3.27414 22 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547 23 2.94256 3.58053 0.11795 3.48445 23 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547 24 3.42491 0.13119 3.47471 2.82302 24 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547 25 0.14284 3.37315 2.79730 3.27414 25 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547 26 3.08143 2.59057 3.12986 0.17984 26 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547 27 2.94256 3.58053 0.11795 3.48445 27 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547 28 3.42491 0.13119 3.47471 2.82302 28 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547 29 3.42491 0.13119 3.47471 2.82302 29 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547 30 3.08143 2.59057 3.12986 0.17984 30 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547 31 3.42491 0.13119 3.47471 2.82302 31 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547 32 3.42491 0.13119 3.47471 2.82302 32 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547 33 3.08143 2.59057 3.12986 0.17984 33 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547 34 3.08143 2.59057 3.12986 0.17984 34 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547 35 3.42491 0.13119 3.47471 2.82302 35 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547 36 0.14284 3.37315 2.79730 3.27414 36 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547 37 2.94256 3.58053 0.11795 3.48445 37 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547 38 3.08143 2.59057 3.12986 0.17984 38 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547 39 2.94256 3.58053 0.11795 3.48445 39 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547 40 3.08143 2.59057 3.12986 0.17984 40 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547 41 3.42491 0.13119 3.47471 2.82302 41 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547 42 2.94256 3.58053 0.11795 3.48445 42 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547 43 3.08143 2.59057 3.12986 0.17984 43 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547 44 2.60420 2.95771 0.24740 2.37221 44 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00743 4.00743 1.46634 0.26236 1.09861 0.40547 45 3.08143 2.59057 3.12986 0.17984 45 - - 1.38629 1.38629 1.38629 1.38629 0.01869 3.98908 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Rhizaria_58S_end_seven_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 15:32:29 2012 NSEQ 2 EFFN 2.000000 CKSUM 1282913076 STATS LOCAL MSV -7.6189 0.72738 STATS LOCAL VITERBI -8.4211 0.72738 STATS LOCAL FORWARD -3.5871 0.72738 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.18710 1.48221 1.25579 1.69877 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.53331 3.02441 0.20344 2.88069 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.23862 2.84929 2.43386 2.70756 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.23862 2.84929 2.43386 2.70756 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.57915 2.25909 2.64442 0.28946 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 0.23862 2.84929 2.43386 2.70756 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.23862 2.84929 2.43386 2.70756 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.23862 2.84929 2.43386 2.70756 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.81865 0.23582 2.88868 2.35662 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.81865 0.23582 2.88868 2.35662 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.53331 3.02441 0.20344 2.88069 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.81865 0.23582 2.88868 2.35662 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 0.23862 2.84929 2.43386 2.70756 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.53331 3.02441 0.20344 2.88069 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.53331 3.02441 0.20344 2.88069 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.23862 2.84929 2.43386 2.70756 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.57915 2.25909 2.64442 0.28946 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.23862 2.84929 2.43386 2.70756 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.57915 2.25909 2.64442 0.28946 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 0.23862 2.84929 2.43386 2.70756 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.53331 3.02441 0.20344 2.88069 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.81865 0.23582 2.88868 2.35662 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.23862 2.84929 2.43386 2.70756 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.53331 3.02441 0.20344 2.88069 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.81865 0.23582 2.88868 2.35662 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.53331 3.02441 0.20344 2.88069 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Rhizaria_58S_end_six_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 15:32:22 2012 NSEQ 2 EFFN 2.000000 CKSUM 1451329582 STATS LOCAL MSV -7.5458 0.72716 STATS LOCAL VITERBI -8.4016 0.72716 STATS LOCAL FORWARD -3.3619 0.72716 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.39238 1.54778 1.06991 1.63088 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.57915 2.25909 2.64442 0.28946 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.23862 2.84929 2.43386 2.70756 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.23862 2.84929 2.43386 2.70756 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.53331 3.02441 0.20344 2.88069 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.23862 2.84929 2.43386 2.70756 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.57915 2.25909 2.64442 0.28946 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.81865 0.23582 2.88868 2.35662 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.53331 3.02441 0.20344 2.88069 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.53331 3.02441 0.20344 2.88069 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.53331 3.02441 0.20344 2.88069 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 0.23862 2.84929 2.43386 2.70756 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 0.23862 2.84929 2.43386 2.70756 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.53331 3.02441 0.20344 2.88069 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.53331 3.02441 0.20344 2.88069 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.57915 2.25909 2.64442 0.28946 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.23862 2.84929 2.43386 2.70756 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.57915 2.25909 2.64442 0.28946 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 0.23862 2.84929 2.43386 2.70756 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.53331 3.02441 0.20344 2.88069 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.81865 0.23582 2.88868 2.35662 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.53331 3.02441 0.20344 2.88069 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.53331 3.02441 0.20344 2.88069 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.81865 0.23582 2.88868 2.35662 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.53331 3.02441 0.20344 2.88069 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Rhizaria_58S_end_three_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 15:31:56 2012 NSEQ 17 EFFN 3.830811 CKSUM 1105590603 STATS LOCAL MSV -7.0323 0.71931 STATS LOCAL VITERBI -7.7236 0.71931 STATS LOCAL FORWARD -4.0046 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.67592 1.39884 1.36030 1.17313 1.38629 1.38629 1.38629 1.38629 0.03373 4.09947 4.09947 1.46634 0.26236 0.00000 * 1 3.60462 0.11149 3.64650 2.95231 1 - - 1.38629 1.38629 1.38629 1.38629 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547 2 3.04933 3.73739 0.10202 3.65808 2 - - 1.38629 1.38629 1.38629 1.38629 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547 3 3.13157 0.22889 3.19022 2.12218 3 - - 1.38629 1.38629 1.38629 1.38629 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547 4 3.24239 2.69270 3.28457 0.15575 4 - - 1.38629 1.38629 1.38629 1.38629 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547 5 3.24239 2.69270 3.28457 0.15575 5 - - 1.38629 1.38629 1.38629 1.38629 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547 6 2.50122 1.00748 2.57173 0.74134 6 - - 1.38629 1.38629 1.38629 1.38629 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547 7 3.60462 0.11149 3.64650 2.95231 7 - - 1.38629 1.38629 1.38629 1.38629 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547 8 3.04933 3.73739 0.10202 3.65808 8 - - 1.38629 1.38629 1.38629 1.38629 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547 9 0.12362 3.52998 2.89846 3.44617 9 - - 1.38629 1.38629 1.38629 1.38629 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547 10 3.04933 3.73739 0.10202 3.65808 10 - - 1.38629 1.38629 1.38629 1.38629 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547 11 0.12362 3.52998 2.89846 3.44617 11 - - 1.38629 1.38629 1.38629 1.38629 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547 12 3.24239 2.69270 3.28457 0.15575 12 - - 1.38629 1.38629 1.38629 1.38629 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547 13 0.12362 3.52998 2.89846 3.44617 13 - - 1.38629 1.38629 1.38629 1.38629 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547 14 2.50122 1.00748 2.57173 0.74134 14 - - 1.38629 1.38629 1.38629 1.38629 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547 15 3.60462 0.11149 3.64650 2.95231 15 - - 1.38629 1.38629 1.38629 1.38629 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547 16 3.60462 0.11149 3.64650 2.95231 16 - - 1.38629 1.38629 1.38629 1.38629 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547 17 3.24239 2.69270 3.28457 0.15575 17 - - 1.38629 1.38629 1.38629 1.38629 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547 18 3.24239 2.69270 3.28457 0.15575 18 - - 1.38629 1.38629 1.38629 1.38629 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547 19 3.04933 3.73739 0.10202 3.65808 19 - - 1.38629 1.38629 1.38629 1.38629 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547 20 0.77230 2.60186 0.97173 2.45942 20 - - 1.38629 1.38629 1.38629 1.38629 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547 21 0.12362 3.52998 2.89846 3.44617 21 - - 1.38629 1.38629 1.38629 1.38629 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547 22 0.12362 3.52998 2.89846 3.44617 22 - - 1.38629 1.38629 1.38629 1.38629 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547 23 3.04933 3.73739 0.10202 3.65808 23 - - 1.38629 1.38629 1.38629 1.38629 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547 24 3.60462 0.11149 3.64650 2.95231 24 - - 1.38629 1.38629 1.38629 1.38629 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547 25 0.12362 3.52998 2.89846 3.44617 25 - - 1.38629 1.38629 1.38629 1.38629 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547 26 3.24239 2.69270 3.28457 0.15575 26 - - 1.38629 1.38629 1.38629 1.38629 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547 27 3.04933 3.73739 0.10202 3.65808 27 - - 1.38629 1.38629 1.38629 1.38629 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547 28 3.60462 0.11149 3.64650 2.95231 28 - - 1.38629 1.38629 1.38629 1.38629 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547 29 3.60462 0.11149 3.64650 2.95231 29 - - 1.38629 1.38629 1.38629 1.38629 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547 30 3.24239 2.69270 3.28457 0.15575 30 - - 1.38629 1.38629 1.38629 1.38629 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547 31 3.60462 0.11149 3.64650 2.95231 31 - - 1.38629 1.38629 1.38629 1.38629 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547 32 3.24239 2.69270 3.28457 0.15575 32 - - 1.38629 1.38629 1.38629 1.38629 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547 33 3.24239 2.69270 3.28457 0.15575 33 - - 1.38629 1.38629 1.38629 1.38629 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547 34 3.24239 2.69270 3.28457 0.15575 34 - - 1.38629 1.38629 1.38629 1.38629 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547 35 3.04933 3.73739 0.10202 3.65808 35 - - 1.38629 1.38629 1.38629 1.38629 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547 36 0.12362 3.52998 2.89846 3.44617 36 - - 1.38629 1.38629 1.38629 1.38629 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547 37 3.04933 3.73739 0.10202 3.65808 37 - - 1.38629 1.38629 1.38629 1.38629 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547 38 3.24239 2.69270 3.28457 0.15575 38 - - 1.38629 1.38629 1.38629 1.38629 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547 39 2.26733 3.33268 0.19735 3.22358 39 - - 1.38629 1.38629 1.38629 1.38629 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547 40 3.24239 2.69270 3.28457 0.15575 40 - - 1.38629 1.38629 1.38629 1.38629 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547 41 3.60462 0.11149 3.64650 2.95231 41 - - 1.38629 1.38629 1.38629 1.38629 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547 42 3.04933 3.73739 0.10202 3.65808 42 - - 1.38629 1.38629 1.38629 1.38629 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547 43 3.04933 3.73739 0.10202 3.65808 43 - - 1.38629 1.38629 1.38629 1.38629 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547 44 3.24239 2.69270 3.28457 0.15575 44 - - 1.38629 1.38629 1.38629 1.38629 0.03373 4.09947 4.09947 1.46634 0.26236 1.09861 0.40547 45 3.24239 2.69270 3.28457 0.15575 45 - - 1.38629 1.38629 1.38629 1.38629 0.01700 4.08275 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Rhizaria_58S_end_two_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 15:31:48 2012 NSEQ 17 EFFN 3.249756 CKSUM 3604078727 STATS LOCAL MSV -8.1048 0.71933 STATS LOCAL VITERBI -7.9622 0.71933 STATS LOCAL FORWARD -4.0599 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.73670 1.25612 1.25633 1.36866 1.38629 1.38629 1.38629 1.38629 0.03739 3.99816 3.99816 1.46634 0.26236 0.00000 * 1 2.93097 3.56372 0.11982 3.46591 1 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547 2 3.40585 0.13351 3.45646 2.80911 2 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547 3 2.93097 3.56372 0.11982 3.46591 3 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547 4 3.40585 0.13351 3.45646 2.80911 4 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547 5 3.06482 2.58000 3.11388 0.18256 5 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547 6 3.06482 2.58000 3.11388 0.18256 6 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547 7 3.06482 2.58000 3.11388 0.18256 7 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547 8 3.40585 0.13351 3.45646 2.80911 8 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547 9 2.93097 3.56372 0.11982 3.46591 9 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547 10 0.23441 2.58428 2.59978 2.82642 10 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547 11 2.93097 3.56372 0.11982 3.46591 11 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547 12 0.14506 3.35663 2.78655 3.25606 12 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547 13 2.93097 3.56372 0.11982 3.46591 13 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547 14 3.40585 0.13351 3.45646 2.80911 14 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547 15 3.40585 0.13351 3.45646 2.80911 15 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547 16 3.40585 0.13351 3.45646 2.80911 16 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547 17 3.06482 2.58000 3.11388 0.18256 17 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547 18 3.40585 0.13351 3.45646 2.80911 18 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547 19 2.93097 3.56372 0.11982 3.46591 19 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547 20 2.93097 3.56372 0.11982 3.46591 20 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547 21 0.14506 3.35663 2.78655 3.25606 21 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547 22 0.14506 3.35663 2.78655 3.25606 22 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547 23 2.93097 3.56372 0.11982 3.46591 23 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547 24 3.40585 0.13351 3.45646 2.80911 24 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547 25 0.14506 3.35663 2.78655 3.25606 25 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547 26 3.06482 2.58000 3.11388 0.18256 26 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547 27 2.93097 3.56372 0.11982 3.46591 27 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547 28 3.40585 0.13351 3.45646 2.80911 28 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547 29 3.40585 0.13351 3.45646 2.80911 29 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547 30 3.06482 2.58000 3.11388 0.18256 30 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547 31 3.40585 0.13351 3.45646 2.80911 31 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547 32 3.06482 2.58000 3.11388 0.18256 32 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547 33 3.40585 0.13351 3.45646 2.80911 33 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547 34 3.06482 2.58000 3.11388 0.18256 34 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547 35 2.93097 3.56372 0.11982 3.46591 35 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547 36 0.14506 3.35663 2.78655 3.25606 36 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547 37 2.93097 3.56372 0.11982 3.46591 37 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547 38 3.06482 2.58000 3.11388 0.18256 38 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547 39 0.14506 3.35663 2.78655 3.25606 39 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547 40 3.06482 2.58000 3.11388 0.18256 40 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547 41 3.40585 0.13351 3.45646 2.80911 41 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547 42 2.93097 3.56372 0.11982 3.46591 42 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547 43 2.93097 3.56372 0.11982 3.46591 43 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547 44 3.06482 2.58000 3.11388 0.18256 44 - - 1.38629 1.38629 1.38629 1.38629 0.03739 3.99816 3.99816 1.46634 0.26236 1.09861 0.40547 45 3.06482 2.58000 3.11388 0.18256 45 - - 1.38629 1.38629 1.38629 1.38629 0.01887 3.97964 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Rhizaria_58S_start_eleven_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 7 02:11:53 2012 NSEQ 31 EFFN 3.379272 CKSUM 2165802544 STATS LOCAL MSV -7.4242 0.71932 STATS LOCAL VITERBI -7.6170 0.71932 STATS LOCAL FORWARD -4.3017 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.55729 1.52929 1.25161 1.24981 1.38629 1.38629 1.38629 1.38629 0.03651 4.02164 4.02164 1.46634 0.26236 0.00000 * 1 2.97916 2.30506 3.03127 0.22170 1 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547 2 3.45378 0.12777 3.50236 2.84402 2 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547 3 3.10676 2.60668 3.15422 0.17578 3 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547 4 2.96001 3.60594 0.11519 3.51250 4 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547 5 0.13955 3.39821 2.81357 3.30158 5 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547 6 2.96001 3.60594 0.11519 3.51250 6 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547 7 2.96001 3.60594 0.11519 3.51250 7 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547 8 3.45378 0.12777 3.50236 2.84402 8 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547 9 3.10676 2.60668 3.15422 0.17578 9 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547 10 3.10676 2.60668 3.15422 0.17578 10 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547 11 3.45378 0.12777 3.50236 2.84402 11 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547 12 0.13955 3.39821 2.81357 3.30158 12 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547 13 3.10676 2.60668 3.15422 0.17578 13 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547 14 0.13955 3.39821 2.81357 3.30158 14 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547 15 0.13955 3.39821 2.81357 3.30158 15 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547 16 0.13955 3.39821 2.81357 3.30158 16 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547 17 3.45378 0.12777 3.50236 2.84402 17 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547 18 3.10676 2.60668 3.15422 0.17578 18 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547 19 2.96001 3.60594 0.11519 3.51250 19 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547 20 3.29555 0.16300 3.34900 2.54800 20 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547 21 0.13955 3.39821 2.81357 3.30158 21 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547 22 2.96001 3.60594 0.11519 3.51250 22 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547 23 3.45378 0.12777 3.50236 2.84402 23 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547 24 2.96001 3.60594 0.11519 3.51250 24 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547 25 3.10676 2.60668 3.15422 0.17578 25 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547 26 2.96001 3.60594 0.11519 3.51250 26 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547 27 3.45378 0.12777 3.50236 2.84402 27 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547 28 3.10676 2.60668 3.15422 0.17578 28 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547 29 3.45378 0.12777 3.50236 2.84402 29 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547 30 2.96001 3.60594 0.11519 3.51250 30 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547 31 2.96001 3.60594 0.11519 3.51250 31 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547 32 3.10676 2.60668 3.15422 0.17578 32 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547 33 3.10676 2.60668 3.15422 0.17578 33 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547 34 2.61246 3.43529 0.15231 3.33228 34 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547 35 0.19383 3.12524 2.69152 2.74111 35 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547 36 2.96001 3.60594 0.11519 3.51250 36 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547 37 3.10676 2.60668 3.15422 0.17578 37 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547 38 2.96001 3.60594 0.11519 3.51250 38 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547 39 3.10676 2.60668 3.15422 0.17578 39 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547 40 2.96001 3.60594 0.11519 3.51250 40 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547 41 3.45378 0.12777 3.50236 2.84402 41 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547 42 0.19602 3.19941 2.38831 3.09154 42 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547 43 3.10676 2.60668 3.15422 0.17578 43 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547 44 3.10676 2.60668 3.15422 0.17578 44 - - 1.38629 1.38629 1.38629 1.38629 0.03651 4.02164 4.02164 1.46634 0.26236 1.09861 0.40547 45 0.13955 3.39821 2.81357 3.30158 45 - - 1.38629 1.38629 1.38629 1.38629 0.01842 4.00356 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Rhizaria_58S_start_five_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 14:39:29 2012 NSEQ 40 EFFN 3.432617 CKSUM 3346258546 STATS LOCAL MSV -7.6747 0.71933 STATS LOCAL VITERBI -7.7146 0.71933 STATS LOCAL FORWARD -4.2191 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.21566 1.45905 1.43705 1.45500 1.38629 1.38629 1.38629 1.38629 0.03615 4.03116 4.03116 1.46634 0.26236 0.00000 * 1 1.71916 2.27454 2.44490 0.46013 1 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547 2 3.47289 0.12556 3.52064 2.85787 2 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547 3 0.13742 3.41482 2.82432 3.31978 3 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547 4 0.31690 2.91014 1.86199 2.78440 4 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547 5 3.12363 2.61740 3.17044 0.17313 5 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547 6 3.47289 0.12556 3.52064 2.85787 6 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547 7 3.12363 2.61740 3.17044 0.17313 7 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547 8 3.12363 2.61740 3.17044 0.17313 8 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547 9 3.03573 2.40304 3.08573 0.20356 9 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547 10 2.97148 3.62270 0.11341 3.53103 10 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547 11 3.47289 0.12556 3.52064 2.85787 11 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547 12 0.13742 3.41482 2.82432 3.31978 12 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547 13 0.13742 3.41482 2.82432 3.31978 13 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547 14 3.12363 2.61740 3.17044 0.17313 14 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547 15 2.97148 3.62270 0.11341 3.53103 15 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547 16 2.97148 3.62270 0.11341 3.53103 16 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547 17 0.13742 3.41482 2.82432 3.31978 17 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547 18 3.12363 2.61740 3.17044 0.17313 18 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547 19 2.97148 3.62270 0.11341 3.53103 19 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547 20 0.13742 3.41482 2.82432 3.31978 20 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547 21 3.47289 0.12556 3.52064 2.85787 21 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547 22 3.12363 2.61740 3.17044 0.17313 22 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547 23 0.13742 3.41482 2.82432 3.31978 23 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547 24 2.97148 3.62270 0.11341 3.53103 24 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547 25 2.97148 3.62270 0.11341 3.53103 25 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547 26 3.47289 0.12556 3.52064 2.85787 26 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547 27 3.12363 2.61740 3.17044 0.17313 27 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547 28 3.47289 0.12556 3.52064 2.85787 28 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547 29 3.12363 2.61740 3.17044 0.17313 29 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547 30 3.47289 0.12556 3.52064 2.85787 30 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547 31 2.97148 3.62270 0.11341 3.53103 31 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547 32 3.47289 0.12556 3.52064 2.85787 32 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547 33 0.13742 3.41482 2.82432 3.31978 33 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547 34 0.13742 3.41482 2.82432 3.31978 34 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547 35 3.32901 0.15694 3.38130 2.58484 35 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547 36 2.97148 3.62270 0.11341 3.53103 36 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547 37 0.13742 3.41482 2.82432 3.31978 37 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547 38 3.12363 2.61740 3.17044 0.17313 38 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547 39 2.97148 3.62270 0.11341 3.53103 39 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547 40 0.13742 3.41482 2.82432 3.31978 40 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547 41 0.13742 3.41482 2.82432 3.31978 41 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547 42 2.97148 3.62270 0.11341 3.53103 42 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547 43 0.13742 3.41482 2.82432 3.31978 43 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547 44 0.13742 3.41482 2.82432 3.31978 44 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03116 4.03116 1.46634 0.26236 1.09861 0.40547 45 3.47289 0.12556 3.52064 2.85787 45 - - 1.38629 1.38629 1.38629 1.38629 0.01824 4.01325 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Rhizaria_58S_start_four_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 14:39:22 2012 NSEQ 21 EFFN 3.222290 CKSUM 1508263825 STATS LOCAL MSV -8.2708 0.71933 STATS LOCAL VITERBI -7.7088 0.71933 STATS LOCAL FORWARD -4.2457 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.21645 1.46650 1.37607 1.51223 1.38629 1.38629 1.38629 1.38629 0.03758 3.99310 3.99310 1.46634 0.26236 0.00000 * 1 0.14629 3.34758 2.78064 3.24617 1 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547 2 3.39541 0.13480 3.44645 2.80147 2 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547 3 2.92459 3.55448 0.12087 3.45573 3 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547 4 0.14629 3.34758 2.78064 3.24617 4 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547 5 3.05574 2.57421 3.10514 0.18407 5 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547 6 3.39541 0.13480 3.44645 2.80147 6 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547 7 3.05574 2.57421 3.10514 0.18407 7 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547 8 3.05574 2.57421 3.10514 0.18407 8 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547 9 3.05574 2.57421 3.10514 0.18407 9 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547 10 2.92459 3.55448 0.12087 3.45573 10 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547 11 3.39541 0.13480 3.44645 2.80147 11 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547 12 0.14629 3.34758 2.78064 3.24617 12 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547 13 0.14629 3.34758 2.78064 3.24617 13 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547 14 3.05574 2.57421 3.10514 0.18407 14 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547 15 2.92459 3.55448 0.12087 3.45573 15 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547 16 2.92459 3.55448 0.12087 3.45573 16 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547 17 0.14629 3.34758 2.78064 3.24617 17 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547 18 3.05574 2.57421 3.10514 0.18407 18 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547 19 2.92459 3.55448 0.12087 3.45573 19 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547 20 0.14629 3.34758 2.78064 3.24617 20 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547 21 3.39541 0.13480 3.44645 2.80147 21 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547 22 3.05574 2.57421 3.10514 0.18407 22 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547 23 0.14629 3.34758 2.78064 3.24617 23 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547 24 2.92459 3.55448 0.12087 3.45573 24 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547 25 2.92459 3.55448 0.12087 3.45573 25 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547 26 3.39541 0.13480 3.44645 2.80147 26 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547 27 3.05574 2.57421 3.10514 0.18407 27 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547 28 3.39541 0.13480 3.44645 2.80147 28 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547 29 3.05574 2.57421 3.10514 0.18407 29 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547 30 3.39541 0.13480 3.44645 2.80147 30 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547 31 2.92459 3.55448 0.12087 3.45573 31 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547 32 3.39541 0.13480 3.44645 2.80147 32 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547 33 0.14629 3.34758 2.78064 3.24617 33 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547 34 0.14629 3.34758 2.78064 3.24617 34 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547 35 3.39541 0.13480 3.44645 2.80147 35 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547 36 2.92459 3.55448 0.12087 3.45573 36 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547 37 0.14629 3.34758 2.78064 3.24617 37 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547 38 3.05574 2.57421 3.10514 0.18407 38 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547 39 2.92459 3.55448 0.12087 3.45573 39 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547 40 0.14629 3.34758 2.78064 3.24617 40 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547 41 0.14629 3.34758 2.78064 3.24617 41 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547 42 2.92459 3.55448 0.12087 3.45573 42 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547 43 0.14629 3.34758 2.78064 3.24617 43 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547 44 0.14629 3.34758 2.78064 3.24617 44 - - 1.38629 1.38629 1.38629 1.38629 0.03758 3.99310 3.99310 1.46634 0.26236 1.09861 0.40547 45 3.39541 0.13480 3.44645 2.80147 45 - - 1.38629 1.38629 1.38629 1.38629 0.01897 3.97449 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Rhizaria_58S_start_one_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 14:39:00 2012 NSEQ 12 EFFN 3.301758 CKSUM 1440402788 STATS LOCAL MSV -8.1666 0.71931 STATS LOCAL VITERBI -7.6903 0.71931 STATS LOCAL FORWARD -3.9835 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.33353 1.43330 1.24691 1.55806 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 0.00000 * 1 2.41922 0.77428 2.49183 1.00180 1 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 2 2.94283 3.58093 0.11791 3.48489 2 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 3 0.14279 3.37354 2.79756 3.27457 3 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 4 3.42536 0.13114 3.47515 2.82335 4 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 5 3.42536 0.13114 3.47515 2.82335 5 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 6 3.42536 0.13114 3.47515 2.82335 6 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 7 3.08183 2.59083 3.13024 0.17977 7 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 8 3.08183 2.59083 3.13024 0.17977 8 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 9 0.14279 3.37354 2.79756 3.27457 9 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 10 2.94283 3.58093 0.11791 3.48489 10 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 11 3.42536 0.13114 3.47515 2.82335 11 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 12 2.94283 3.58093 0.11791 3.48489 12 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 13 0.14279 3.37354 2.79756 3.27457 13 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 14 0.14279 3.37354 2.79756 3.27457 14 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 15 2.94283 3.58093 0.11791 3.48489 15 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 16 2.94283 3.58093 0.11791 3.48489 16 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 17 0.14279 3.37354 2.79756 3.27457 17 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 18 3.08183 2.59083 3.13024 0.17977 18 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 19 2.94283 3.58093 0.11791 3.48489 19 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 20 3.08183 2.59083 3.13024 0.17977 20 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 21 3.42536 0.13114 3.47515 2.82335 21 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 22 3.08183 2.59083 3.13024 0.17977 22 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 23 3.08183 2.59083 3.13024 0.17977 23 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 24 2.94283 3.58093 0.11791 3.48489 24 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 25 2.94283 3.58093 0.11791 3.48489 25 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 26 3.08183 2.59083 3.13024 0.17977 26 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 27 3.08183 2.59083 3.13024 0.17977 27 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 28 3.42536 0.13114 3.47515 2.82335 28 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 29 3.42536 0.13114 3.47515 2.82335 29 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 30 2.94283 3.58093 0.11791 3.48489 30 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 31 2.94283 3.58093 0.11791 3.48489 31 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 32 3.42536 0.13114 3.47515 2.82335 32 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 33 0.14279 3.37354 2.79756 3.27457 33 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 34 0.14279 3.37354 2.79756 3.27457 34 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 35 3.42536 0.13114 3.47515 2.82335 35 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 36 2.94283 3.58093 0.11791 3.48489 36 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 37 0.14279 3.37354 2.79756 3.27457 37 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 38 3.08183 2.59083 3.13024 0.17977 38 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 39 2.94283 3.58093 0.11791 3.48489 39 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 40 0.14279 3.37354 2.79756 3.27457 40 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 41 0.14279 3.37354 2.79756 3.27457 41 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 42 2.94283 3.58093 0.11791 3.48489 42 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 43 0.14279 3.37354 2.79756 3.27457 43 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 44 0.14279 3.37354 2.79756 3.27457 44 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 45 3.42536 0.13114 3.47515 2.82335 45 - - 1.38629 1.38629 1.38629 1.38629 0.01869 3.98931 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Rhizaria_58S_start_seven_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 14:39:42 2012 NSEQ 2 EFFN 2.000000 CKSUM 3286888011 STATS LOCAL MSV -7.5161 0.72833 STATS LOCAL VITERBI -8.2412 0.72833 STATS LOCAL FORWARD -3.6122 0.72833 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.33870 1.58592 1.37006 1.27668 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.57915 2.25909 2.64442 0.28946 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.57915 2.25909 2.64442 0.28946 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.23862 2.84929 2.43386 2.70756 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.53331 3.02441 0.20344 2.88069 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.57915 2.25909 2.64442 0.28946 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.57915 2.25909 2.64442 0.28946 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 0.23862 2.84929 2.43386 2.70756 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 0.23862 2.84929 2.43386 2.70756 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.57915 2.25909 2.64442 0.28946 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.53331 3.02441 0.20344 2.88069 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.81865 0.23582 2.88868 2.35662 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.23862 2.84929 2.43386 2.70756 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.57915 2.25909 2.64442 0.28946 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.81865 0.23582 2.88868 2.35662 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.57915 2.25909 2.64442 0.28946 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 0.23862 2.84929 2.43386 2.70756 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.53331 3.02441 0.20344 2.88069 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.53331 3.02441 0.20344 2.88069 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.81865 0.23582 2.88868 2.35662 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.57915 2.25909 2.64442 0.28946 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.23862 2.84929 2.43386 2.70756 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.53331 3.02441 0.20344 2.88069 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.23862 2.84929 2.43386 2.70756 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.23862 2.84929 2.43386 2.70756 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.53331 3.02441 0.20344 2.88069 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.23862 2.84929 2.43386 2.70756 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.81865 0.23582 2.88868 2.35662 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Rhizaria_58S_start_six_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 14:39:35 2012 NSEQ 6 EFFN 3.348633 CKSUM 2591723296 STATS LOCAL MSV -8.3005 0.71933 STATS LOCAL VITERBI -7.5976 0.71933 STATS LOCAL FORWARD -4.2781 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.36916 1.46090 1.28717 1.43716 1.38629 1.38629 1.38629 1.38629 0.03671 4.01614 4.01614 1.46634 0.26236 0.00000 * 1 0.14081 3.38854 2.80730 3.29098 1 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547 2 0.14081 3.38854 2.80730 3.29098 2 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547 3 0.14081 3.38854 2.80730 3.29098 3 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547 4 2.95329 3.59614 0.11625 3.50169 4 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547 5 3.44264 0.12908 3.49169 2.83593 5 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547 6 3.44264 0.12908 3.49169 2.83593 6 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547 7 3.09697 2.60046 3.14480 0.17734 7 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547 8 3.09697 2.60046 3.14480 0.17734 8 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547 9 2.95329 3.59614 0.11625 3.50169 9 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547 10 3.44264 0.12908 3.49169 2.83593 10 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547 11 3.09697 2.60046 3.14480 0.17734 11 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547 12 2.95329 3.59614 0.11625 3.50169 12 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547 13 0.14081 3.38854 2.80730 3.29098 13 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547 14 3.44264 0.12908 3.49169 2.83593 14 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547 15 2.95329 3.59614 0.11625 3.50169 15 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547 16 2.95329 3.59614 0.11625 3.50169 16 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547 17 0.14081 3.38854 2.80730 3.29098 17 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547 18 3.09697 2.60046 3.14480 0.17734 18 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547 19 2.95329 3.59614 0.11625 3.50169 19 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547 20 3.09697 2.60046 3.14480 0.17734 20 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547 21 3.44264 0.12908 3.49169 2.83593 21 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547 22 3.09697 2.60046 3.14480 0.17734 22 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547 23 0.14081 3.38854 2.80730 3.29098 23 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547 24 2.95329 3.59614 0.11625 3.50169 24 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547 25 2.95329 3.59614 0.11625 3.50169 25 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547 26 3.44264 0.12908 3.49169 2.83593 26 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547 27 3.09697 2.60046 3.14480 0.17734 27 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547 28 3.44264 0.12908 3.49169 2.83593 28 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547 29 3.09697 2.60046 3.14480 0.17734 29 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547 30 3.09697 2.60046 3.14480 0.17734 30 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547 31 2.95329 3.59614 0.11625 3.50169 31 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547 32 3.44264 0.12908 3.49169 2.83593 32 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547 33 0.86047 2.51955 0.90766 2.37434 33 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547 34 3.09697 2.60046 3.14480 0.17734 34 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547 35 3.44264 0.12908 3.49169 2.83593 35 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547 36 2.95329 3.59614 0.11625 3.50169 36 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547 37 0.14081 3.38854 2.80730 3.29098 37 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547 38 3.09697 2.60046 3.14480 0.17734 38 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547 39 2.95329 3.59614 0.11625 3.50169 39 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547 40 0.14081 3.38854 2.80730 3.29098 40 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547 41 0.14081 3.38854 2.80730 3.29098 41 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547 42 2.95329 3.59614 0.11625 3.50169 42 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547 43 0.14081 3.38854 2.80730 3.29098 43 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547 44 0.14081 3.38854 2.80730 3.29098 44 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01614 4.01614 1.46634 0.26236 1.09861 0.40547 45 3.44264 0.12908 3.49169 2.83593 45 - - 1.38629 1.38629 1.38629 1.38629 0.01852 3.99795 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Rhizaria_58S_start_three_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 14:39:14 2012 NSEQ 2 EFFN 2.000000 CKSUM 708669621 STATS LOCAL MSV -7.6157 0.72839 STATS LOCAL VITERBI -8.2097 0.72839 STATS LOCAL FORWARD -3.6198 0.72839 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.18583 1.58669 1.49120 1.32877 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 0.23862 2.84929 2.43386 2.70756 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.23862 2.84929 2.43386 2.70756 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.57915 2.25909 2.64442 0.28946 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.53331 3.02441 0.20344 2.88069 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.57915 2.25909 2.64442 0.28946 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 0.23862 2.84929 2.43386 2.70756 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 0.23862 2.84929 2.43386 2.70756 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.81865 0.23582 2.88868 2.35662 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.23862 2.84929 2.43386 2.70756 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.23862 2.84929 2.43386 2.70756 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.23862 2.84929 2.43386 2.70756 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.57915 2.25909 2.64442 0.28946 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.81865 0.23582 2.88868 2.35662 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.57915 2.25909 2.64442 0.28946 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.57915 2.25909 2.64442 0.28946 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.53331 3.02441 0.20344 2.88069 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.53331 3.02441 0.20344 2.88069 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.57915 2.25909 2.64442 0.28946 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.57915 2.25909 2.64442 0.28946 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.81865 0.23582 2.88868 2.35662 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.23862 2.84929 2.43386 2.70756 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.23862 2.84929 2.43386 2.70756 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.53331 3.02441 0.20344 2.88069 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.23862 2.84929 2.43386 2.70756 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.23862 2.84929 2.43386 2.70756 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.53331 3.02441 0.20344 2.88069 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.23862 2.84929 2.43386 2.70756 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.81865 0.23582 2.88868 2.35662 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Rhizaria_58S_start_two_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 14:39:07 2012 NSEQ 31 EFFN 3.757690 CKSUM 3240878011 STATS LOCAL MSV -7.2460 0.71932 STATS LOCAL VITERBI -7.7295 0.71932 STATS LOCAL FORWARD -4.3227 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.16412 1.39048 1.62656 1.41782 1.38629 1.38629 1.38629 1.38629 0.03415 4.08727 4.08727 1.46634 0.26236 0.00000 * 1 3.58181 0.11379 3.62473 2.93607 1 - - 1.38629 1.38629 1.38629 1.38629 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547 2 0.12590 3.50995 2.88560 3.42416 2 - - 1.38629 1.38629 1.38629 1.38629 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547 3 0.12590 3.50995 2.88560 3.42416 3 - - 1.38629 1.38629 1.38629 1.38629 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547 4 3.58181 0.11379 3.62473 2.93607 4 - - 1.38629 1.38629 1.38629 1.38629 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547 5 3.22150 2.67945 3.26449 0.15866 5 - - 1.38629 1.38629 1.38629 1.38629 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547 6 3.58181 0.11379 3.62473 2.93607 6 - - 1.38629 1.38629 1.38629 1.38629 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547 7 3.22150 2.67945 3.26449 0.15866 7 - - 1.38629 1.38629 1.38629 1.38629 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547 8 3.22150 2.67945 3.26449 0.15866 8 - - 1.38629 1.38629 1.38629 1.38629 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547 9 0.12590 3.50995 2.88560 3.42416 9 - - 1.38629 1.38629 1.38629 1.38629 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547 10 1.78111 2.99185 0.32259 2.86322 10 - - 1.38629 1.38629 1.38629 1.38629 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547 11 3.58181 0.11379 3.62473 2.93607 11 - - 1.38629 1.38629 1.38629 1.38629 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547 12 0.12590 3.50995 2.88560 3.42416 12 - - 1.38629 1.38629 1.38629 1.38629 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547 13 0.34060 2.91802 1.75258 2.79211 13 - - 1.38629 1.38629 1.38629 1.38629 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547 14 3.22150 2.67945 3.26449 0.15866 14 - - 1.38629 1.38629 1.38629 1.38629 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547 15 1.66599 2.91709 0.36359 2.78503 15 - - 1.38629 1.38629 1.38629 1.38629 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547 16 3.03598 3.71764 0.10389 3.63616 16 - - 1.38629 1.38629 1.38629 1.38629 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547 17 0.12590 3.50995 2.88560 3.42416 17 - - 1.38629 1.38629 1.38629 1.38629 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547 18 3.22150 2.67945 3.26449 0.15866 18 - - 1.38629 1.38629 1.38629 1.38629 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547 19 0.12590 3.50995 2.88560 3.42416 19 - - 1.38629 1.38629 1.38629 1.38629 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547 20 3.22150 2.67945 3.26449 0.15866 20 - - 1.38629 1.38629 1.38629 1.38629 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547 21 3.58181 0.11379 3.62473 2.93607 21 - - 1.38629 1.38629 1.38629 1.38629 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547 22 3.22150 2.67945 3.26449 0.15866 22 - - 1.38629 1.38629 1.38629 1.38629 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547 23 3.22150 2.67945 3.26449 0.15866 23 - - 1.38629 1.38629 1.38629 1.38629 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547 24 3.03598 3.71764 0.10389 3.63616 24 - - 1.38629 1.38629 1.38629 1.38629 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547 25 3.03598 3.71764 0.10389 3.63616 25 - - 1.38629 1.38629 1.38629 1.38629 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547 26 3.11416 2.40862 3.16158 0.19445 26 - - 1.38629 1.38629 1.38629 1.38629 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547 27 3.22150 2.67945 3.26449 0.15866 27 - - 1.38629 1.38629 1.38629 1.38629 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547 28 3.58181 0.11379 3.62473 2.93607 28 - - 1.38629 1.38629 1.38629 1.38629 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547 29 2.89669 0.32029 2.96150 1.78907 29 - - 1.38629 1.38629 1.38629 1.38629 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547 30 3.58181 0.11379 3.62473 2.93607 30 - - 1.38629 1.38629 1.38629 1.38629 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547 31 0.42036 2.79880 1.54738 2.66644 31 - - 1.38629 1.38629 1.38629 1.38629 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547 32 3.58181 0.11379 3.62473 2.93607 32 - - 1.38629 1.38629 1.38629 1.38629 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547 33 0.12590 3.50995 2.88560 3.42416 33 - - 1.38629 1.38629 1.38629 1.38629 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547 34 0.12590 3.50995 2.88560 3.42416 34 - - 1.38629 1.38629 1.38629 1.38629 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547 35 3.58181 0.11379 3.62473 2.93607 35 - - 1.38629 1.38629 1.38629 1.38629 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547 36 3.03598 3.71764 0.10389 3.63616 36 - - 1.38629 1.38629 1.38629 1.38629 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547 37 0.12590 3.50995 2.88560 3.42416 37 - - 1.38629 1.38629 1.38629 1.38629 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547 38 3.22150 2.67945 3.26449 0.15866 38 - - 1.38629 1.38629 1.38629 1.38629 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547 39 3.03598 3.71764 0.10389 3.63616 39 - - 1.38629 1.38629 1.38629 1.38629 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547 40 0.12590 3.50995 2.88560 3.42416 40 - - 1.38629 1.38629 1.38629 1.38629 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547 41 0.12590 3.50995 2.88560 3.42416 41 - - 1.38629 1.38629 1.38629 1.38629 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547 42 3.03598 3.71764 0.10389 3.63616 42 - - 1.38629 1.38629 1.38629 1.38629 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547 43 0.12590 3.50995 2.88560 3.42416 43 - - 1.38629 1.38629 1.38629 1.38629 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547 44 0.12590 3.50995 2.88560 3.42416 44 - - 1.38629 1.38629 1.38629 1.38629 0.03415 4.08727 4.08727 1.46634 0.26236 1.09861 0.40547 45 3.58181 0.11379 3.62473 2.93607 45 - - 1.38629 1.38629 1.38629 1.38629 0.01722 4.07034 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Rhizaria_58S_start_sevenb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 7 01:37:55 2012 NSEQ 2 EFFN 2.000000 CKSUM 936571363 STATS LOCAL MSV -7.4273 0.72954 STATS LOCAL VITERBI -8.2698 0.72954 STATS LOCAL FORWARD -3.3835 0.72954 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.21521 1.42509 1.55460 1.37996 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.81865 0.23582 2.88868 2.35662 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.23862 2.84929 2.43386 2.70756 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.23862 2.84929 2.43386 2.70756 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.57915 2.25909 2.64442 0.28946 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.57915 2.25909 2.64442 0.28946 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 0.23862 2.84929 2.43386 2.70756 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 0.23862 2.84929 2.43386 2.70756 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.81865 0.23582 2.88868 2.35662 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.23862 2.84929 2.43386 2.70756 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.81865 0.23582 2.88868 2.35662 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.23862 2.84929 2.43386 2.70756 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.23862 2.84929 2.43386 2.70756 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.57915 2.25909 2.64442 0.28946 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.81865 0.23582 2.88868 2.35662 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.57915 2.25909 2.64442 0.28946 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.57915 2.25909 2.64442 0.28946 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.53331 3.02441 0.20344 2.88069 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.53331 3.02441 0.20344 2.88069 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.15554 1.00938 2.23102 0.88601 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.57915 2.25909 2.64442 0.28946 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.57915 2.25909 2.64442 0.28946 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.81865 0.23582 2.88868 2.35662 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.23862 2.84929 2.43386 2.70756 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 1.03732 1.95876 1.96551 1.00928 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.53331 3.02441 0.20344 2.88069 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.23862 2.84929 2.43386 2.70756 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.23862 2.84929 2.43386 2.70756 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.53331 3.02441 0.20344 2.88069 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.23862 2.84929 2.43386 2.70756 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.81865 0.23582 2.88868 2.35662 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Rhizaria_58S_start_ten_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 7 01:38:08 2012 NSEQ 221 EFFN 3.469986 CKSUM 3178722947 STATS LOCAL MSV -7.3549 0.71932 STATS LOCAL VITERBI -7.7369 0.71932 STATS LOCAL FORWARD -4.0992 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.63448 1.53575 1.24649 1.19687 1.38629 1.38629 1.38629 1.38629 0.03591 4.03777 4.03777 1.46634 0.26236 0.00000 * 1 0.18763 2.92286 2.65754 3.05390 1 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547 2 2.69988 0.30745 2.22941 2.40931 2 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547 3 3.13531 2.62481 3.18166 0.17133 3 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547 4 2.86894 3.58577 0.12204 3.49300 4 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547 5 3.48606 0.12407 3.53324 2.86739 5 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547 6 0.14975 3.37268 2.70284 3.27630 6 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547 7 3.13531 2.62481 3.18166 0.17133 7 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547 8 2.97936 3.63424 0.11220 3.54379 8 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547 9 0.14692 3.38343 2.72774 3.28763 9 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547 10 2.97936 3.63424 0.11220 3.54379 10 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547 11 3.48606 0.12407 3.53324 2.86739 11 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547 12 2.97936 3.63424 0.11220 3.54379 12 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547 13 0.13597 3.42628 2.83173 3.33234 13 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547 14 3.13531 2.62481 3.18166 0.17133 14 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547 15 2.97936 3.63424 0.11220 3.54379 15 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547 16 2.97936 3.63424 0.11220 3.54379 16 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547 17 0.13597 3.42628 2.83173 3.33234 17 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547 18 3.13531 2.62481 3.18166 0.17133 18 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547 19 3.45123 0.12635 3.51748 2.85927 19 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547 20 3.13531 2.62481 3.18166 0.17133 20 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547 21 3.48606 0.12407 3.53324 2.86739 21 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547 22 3.08717 2.50341 3.13523 0.18745 22 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547 23 3.13531 2.62481 3.18166 0.17133 23 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547 24 2.97936 3.63424 0.11220 3.54379 24 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547 25 2.86894 3.58577 0.12204 3.49300 25 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547 26 3.03546 2.58700 2.95945 0.19255 26 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547 27 3.13531 2.62481 3.18166 0.17133 27 - - 1.38629 1.38629 1.38629 1.38629 0.03832 4.03777 3.91395 1.46634 0.26236 1.09861 0.40547 28 3.48143 0.12459 3.52882 2.86404 28 - - 1.38629 1.38629 1.38629 1.38629 0.03600 4.03544 4.03544 1.46634 0.26236 1.01779 0.44846 29 3.48606 0.12407 3.53324 2.86739 29 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547 30 3.09673 2.52680 3.14443 0.18417 30 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547 31 3.09210 2.51544 3.13998 0.18575 31 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547 32 2.97936 3.63424 0.11220 3.54379 32 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547 33 3.48606 0.12407 3.53324 2.86739 33 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547 34 0.13597 3.42628 2.83173 3.33234 34 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547 35 3.13531 2.62481 3.18166 0.17133 35 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547 36 3.48606 0.12407 3.53324 2.86739 36 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547 37 2.97936 3.63424 0.11220 3.54379 37 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547 38 3.09579 2.52447 3.14352 0.18449 38 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547 39 3.13531 2.62481 3.18166 0.17133 39 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547 40 2.86894 3.58577 0.12204 3.49300 40 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547 41 0.13597 3.42628 2.83173 3.33234 41 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547 42 0.14692 3.38343 2.72774 3.28763 42 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547 43 2.97936 3.63424 0.11220 3.54379 43 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547 44 2.97936 3.63424 0.11220 3.54379 44 - - 1.38629 1.38629 1.38629 1.38629 0.03591 4.03777 4.03777 1.46634 0.26236 1.09861 0.40547 45 3.09579 2.52447 3.14352 0.18449 45 - - 1.38629 1.38629 1.38629 1.38629 0.01812 4.01998 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Rhizaria_58S_start_twelve_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 7 01:38:58 2012 NSEQ 14 EFFN 3.291504 CKSUM 1264888513 STATS LOCAL MSV -7.9360 0.71932 STATS LOCAL VITERBI -7.7626 0.71932 STATS LOCAL FORWARD -4.0675 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.62979 1.52617 1.25455 1.19912 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 0.00000 * 1 0.14323 3.37023 2.79540 3.27094 1 - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 2 3.42154 0.13160 3.47149 2.82057 2 - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 3 3.07849 2.58870 3.12703 0.18032 3 - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 4 2.94052 3.57756 0.11828 3.48118 4 - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 5 3.42154 0.13160 3.47149 2.82057 5 - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 6 0.14323 3.37023 2.79540 3.27094 6 - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 7 3.07849 2.58870 3.12703 0.18032 7 - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 8 2.94052 3.57756 0.11828 3.48118 8 - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 9 0.14323 3.37023 2.79540 3.27094 9 - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 10 2.94052 3.57756 0.11828 3.48118 10 - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 11 3.42154 0.13160 3.47149 2.82057 11 - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 12 2.94052 3.57756 0.11828 3.48118 12 - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 13 0.14323 3.37023 2.79540 3.27094 13 - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 14 3.07849 2.58870 3.12703 0.18032 14 - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 15 2.94052 3.57756 0.11828 3.48118 15 - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 16 2.94052 3.57756 0.11828 3.48118 16 - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 17 0.14323 3.37023 2.79540 3.27094 17 - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 18 3.07849 2.58870 3.12703 0.18032 18 - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 19 3.42154 0.13160 3.47149 2.82057 19 - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 20 3.07849 2.58870 3.12703 0.18032 20 - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 21 3.42154 0.13160 3.47149 2.82057 21 - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 22 3.07849 2.58870 3.12703 0.18032 22 - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 23 3.07849 2.58870 3.12703 0.18032 23 - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 24 2.94052 3.57756 0.11828 3.48118 24 - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 25 2.94052 3.57756 0.11828 3.48118 25 - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 26 3.07849 2.58870 3.12703 0.18032 26 - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 27 3.07849 2.58870 3.12703 0.18032 27 - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 28 3.42154 0.13160 3.47149 2.82057 28 - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 29 3.42154 0.13160 3.47149 2.82057 29 - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 30 3.07849 2.58870 3.12703 0.18032 30 - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 31 3.07849 2.58870 3.12703 0.18032 31 - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 32 2.94052 3.57756 0.11828 3.48118 32 - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 33 3.42154 0.13160 3.47149 2.82057 33 - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 34 0.14323 3.37023 2.79540 3.27094 34 - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 35 3.07849 2.58870 3.12703 0.18032 35 - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 36 3.42154 0.13160 3.47149 2.82057 36 - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 37 2.94052 3.57756 0.11828 3.48118 37 - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 38 3.07849 2.58870 3.12703 0.18032 38 - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 39 3.07849 2.58870 3.12703 0.18032 39 - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 40 2.94052 3.57756 0.11828 3.48118 40 - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 41 0.14323 3.37023 2.79540 3.27094 41 - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 42 0.14323 3.37023 2.79540 3.27094 42 - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 43 2.94052 3.57756 0.11828 3.48118 43 - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 44 2.94052 3.57756 0.11828 3.48118 44 - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 45 3.07849 2.58870 3.12703 0.18032 45 - - 1.38629 1.38629 1.38629 1.38629 0.01872 3.98741 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Rhizaria_4_LSU_start_eight_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 15:51:35 2012 NSEQ 3 EFFN 3.000000 CKSUM 1950209703 STATS LOCAL MSV -8.0821 0.72055 STATS LOCAL VITERBI -7.8768 0.72055 STATS LOCAL FORWARD -3.2887 0.72055 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 0.97098 1.50494 1.50771 1.72686 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 3.30705 0.14631 3.36166 2.73626 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 0.15719 3.27118 2.73043 3.16274 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 0.15719 3.27118 2.73043 3.16274 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 0.15719 3.27118 2.73043 3.16274 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 0.15719 3.27118 2.73043 3.16274 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 0.15719 3.27118 2.73043 3.16274 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 0.15719 3.27118 2.73043 3.16274 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 0.15719 3.27118 2.73043 3.16274 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 3.30705 0.14631 3.36166 2.73626 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 2.97980 2.52563 3.03204 0.19727 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 2.97980 2.52563 3.03204 0.19727 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 0.15719 3.27118 2.73043 3.16274 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 3.30705 0.14631 3.36166 2.73626 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 0.15719 3.27118 2.73043 3.16274 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 0.15719 3.27118 2.73043 3.16274 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 0.15719 3.27118 2.73043 3.16274 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 0.15719 3.27118 2.73043 3.16274 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 2.86982 3.47591 0.13017 3.36931 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 2.97980 2.52563 3.03204 0.19727 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 2.43223 0.62271 2.50508 1.22417 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 2.97980 2.52563 3.03204 0.19727 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 3.30705 0.14631 3.36166 2.73626 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 0.15719 3.27118 2.73043 3.16274 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 0.15719 3.27118 2.73043 3.16274 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 2.86982 3.47591 0.13017 3.36931 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 2.97980 2.52563 3.03204 0.19727 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 2.86982 3.47591 0.13017 3.36931 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 0.15719 3.27118 2.73043 3.16274 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 0.15719 3.27118 2.73043 3.16274 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 2.86982 3.47591 0.13017 3.36931 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 2.97980 2.52563 3.03204 0.19727 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 0.15719 3.27118 2.73043 3.16274 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 0.15719 3.27118 2.73043 3.16274 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 2.86982 3.47591 0.13017 3.36931 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 2.86982 3.47591 0.13017 3.36931 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 3.30705 0.14631 3.36166 2.73626 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 2.86982 3.47591 0.13017 3.36931 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 0.15719 3.27118 2.73043 3.16274 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 3.30705 0.14631 3.36166 2.73626 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 3.30705 0.14631 3.36166 2.73626 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 3.30705 0.14631 3.36166 2.73626 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 2.86982 3.47591 0.13017 3.36931 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 3.30705 0.14631 3.36166 2.73626 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 2.97980 2.52563 3.03204 0.19727 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 2.86982 3.47591 0.13017 3.36931 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Rhizaria_4_LSU_start_five_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 15:48:20 2012 NSEQ 2 EFFN 2.000000 CKSUM 76545263 STATS LOCAL MSV -7.5144 0.72774 STATS LOCAL VITERBI -8.3161 0.72774 STATS LOCAL FORWARD -3.3498 0.72774 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.29057 1.34961 1.37118 1.55242 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.53331 3.02441 0.20344 2.88069 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.23862 2.84929 2.43386 2.70756 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.53331 3.02441 0.20344 2.88069 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.57915 2.25909 2.64442 0.28946 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.57915 2.25909 2.64442 0.28946 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.81865 0.23582 2.88868 2.35662 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.53331 3.02441 0.20344 2.88069 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.81865 0.23582 2.88868 2.35662 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 0.23862 2.84929 2.43386 2.70756 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.23862 2.84929 2.43386 2.70756 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.53331 3.02441 0.20344 2.88069 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.57915 2.25909 2.64442 0.28946 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.23862 2.84929 2.43386 2.70756 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 0.23862 2.84929 2.43386 2.70756 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.53331 3.02441 0.20344 2.88069 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.57915 2.25909 2.64442 0.28946 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.23862 2.84929 2.43386 2.70756 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.81865 0.23582 2.88868 2.35662 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.53331 3.02441 0.20344 2.88069 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.81865 0.23582 2.88868 2.35662 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.53331 3.02441 0.20344 2.88069 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.23862 2.84929 2.43386 2.70756 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 0.23862 2.84929 2.43386 2.70756 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.81865 0.23582 2.88868 2.35662 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.57915 2.25909 2.64442 0.28946 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.23862 2.84929 2.43386 2.70756 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.53331 3.02441 0.20344 2.88069 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.81865 0.23582 2.88868 2.35662 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.23862 2.84929 2.43386 2.70756 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Rhizaria_4_LSU_start_one_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 15:47:38 2012 NSEQ 12 EFFN 3.395508 CKSUM 2392704946 STATS LOCAL MSV -7.3558 0.71933 STATS LOCAL VITERBI -7.8378 0.71933 STATS LOCAL FORWARD -3.9627 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.16579 1.72185 1.19494 1.57568 1.38629 1.38629 1.38629 1.38629 0.03640 4.02455 4.02455 1.46634 0.26236 0.00000 * 1 2.25159 2.41497 0.52437 1.54427 1 - - 1.38629 1.38629 1.38629 1.38629 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547 2 0.39984 2.76941 1.63350 2.63628 2 - - 1.38629 1.38629 1.38629 1.38629 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547 3 3.11192 2.60996 3.15918 0.17496 3 - - 1.38629 1.38629 1.38629 1.38629 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547 4 3.11192 2.60996 3.15918 0.17496 4 - - 1.38629 1.38629 1.38629 1.38629 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547 5 2.96353 3.61108 0.11464 3.51818 5 - - 1.38629 1.38629 1.38629 1.38629 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547 6 0.13889 3.40330 2.81687 3.30715 6 - - 1.38629 1.38629 1.38629 1.38629 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547 7 3.45963 0.12709 3.50796 2.84827 7 - - 1.38629 1.38629 1.38629 1.38629 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547 8 3.45963 0.12709 3.50796 2.84827 8 - - 1.38629 1.38629 1.38629 1.38629 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547 9 3.11192 2.60996 3.15918 0.17496 9 - - 1.38629 1.38629 1.38629 1.38629 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547 10 2.96353 3.61108 0.11464 3.51818 10 - - 1.38629 1.38629 1.38629 1.38629 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547 11 0.13889 3.40330 2.81687 3.30715 11 - - 1.38629 1.38629 1.38629 1.38629 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547 12 0.13889 3.40330 2.81687 3.30715 12 - - 1.38629 1.38629 1.38629 1.38629 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547 13 2.96353 3.61108 0.11464 3.51818 13 - - 1.38629 1.38629 1.38629 1.38629 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547 14 3.11192 2.60996 3.15918 0.17496 14 - - 1.38629 1.38629 1.38629 1.38629 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547 15 2.96353 3.61108 0.11464 3.51818 15 - - 1.38629 1.38629 1.38629 1.38629 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547 16 0.13889 3.40330 2.81687 3.30715 16 - - 1.38629 1.38629 1.38629 1.38629 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547 17 2.96353 3.61108 0.11464 3.51818 17 - - 1.38629 1.38629 1.38629 1.38629 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547 18 2.96353 3.61108 0.11464 3.51818 18 - - 1.38629 1.38629 1.38629 1.38629 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547 19 3.11192 2.60996 3.15918 0.17496 19 - - 1.38629 1.38629 1.38629 1.38629 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547 20 0.13889 3.40330 2.81687 3.30715 20 - - 1.38629 1.38629 1.38629 1.38629 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547 21 0.13889 3.40330 2.81687 3.30715 21 - - 1.38629 1.38629 1.38629 1.38629 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547 22 2.96353 3.61108 0.11464 3.51818 22 - - 1.38629 1.38629 1.38629 1.38629 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547 23 0.13889 3.40330 2.81687 3.30715 23 - - 1.38629 1.38629 1.38629 1.38629 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547 24 2.96353 3.61108 0.11464 3.51818 24 - - 1.38629 1.38629 1.38629 1.38629 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547 25 2.96353 3.61108 0.11464 3.51818 25 - - 1.38629 1.38629 1.38629 1.38629 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547 26 0.13889 3.40330 2.81687 3.30715 26 - - 1.38629 1.38629 1.38629 1.38629 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547 27 3.45963 0.12709 3.50796 2.84827 27 - - 1.38629 1.38629 1.38629 1.38629 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547 28 3.45963 0.12709 3.50796 2.84827 28 - - 1.38629 1.38629 1.38629 1.38629 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547 29 2.96353 3.61108 0.11464 3.51818 29 - - 1.38629 1.38629 1.38629 1.38629 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547 30 2.96353 3.61108 0.11464 3.51818 30 - - 1.38629 1.38629 1.38629 1.38629 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547 31 3.45963 0.12709 3.50796 2.84827 31 - - 1.38629 1.38629 1.38629 1.38629 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547 32 3.45963 0.12709 3.50796 2.84827 32 - - 1.38629 1.38629 1.38629 1.38629 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547 33 2.96353 3.61108 0.11464 3.51818 33 - - 1.38629 1.38629 1.38629 1.38629 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547 34 0.13889 3.40330 2.81687 3.30715 34 - - 1.38629 1.38629 1.38629 1.38629 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547 35 0.13889 3.40330 2.81687 3.30715 35 - - 1.38629 1.38629 1.38629 1.38629 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547 36 3.11192 2.60996 3.15918 0.17496 36 - - 1.38629 1.38629 1.38629 1.38629 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547 37 3.11192 2.60996 3.15918 0.17496 37 - - 1.38629 1.38629 1.38629 1.38629 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547 38 3.11192 2.60996 3.15918 0.17496 38 - - 1.38629 1.38629 1.38629 1.38629 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547 39 0.13889 3.40330 2.81687 3.30715 39 - - 1.38629 1.38629 1.38629 1.38629 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547 40 0.13889 3.40330 2.81687 3.30715 40 - - 1.38629 1.38629 1.38629 1.38629 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547 41 2.96353 3.61108 0.11464 3.51818 41 - - 1.38629 1.38629 1.38629 1.38629 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547 42 3.45963 0.12709 3.50796 2.84827 42 - - 1.38629 1.38629 1.38629 1.38629 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547 43 0.13889 3.40330 2.81687 3.30715 43 - - 1.38629 1.38629 1.38629 1.38629 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547 44 3.11192 2.60996 3.15918 0.17496 44 - - 1.38629 1.38629 1.38629 1.38629 0.03640 4.02455 4.02455 1.46634 0.26236 1.09861 0.40547 45 0.13889 3.40330 2.81687 3.30715 45 - - 1.38629 1.38629 1.38629 1.38629 0.01836 4.00652 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Rhizaria_4_LSU_start_seven_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 15:48:49 2012 NSEQ 2 EFFN 2.000000 CKSUM 3237321859 STATS LOCAL MSV -7.5995 0.72817 STATS LOCAL VITERBI -8.1354 0.72817 STATS LOCAL FORWARD -3.3775 0.72817 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.09658 1.59494 1.48795 1.43871 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.81865 0.23582 2.88868 2.35662 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.23862 2.84929 2.43386 2.70756 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.23862 2.84929 2.43386 2.70756 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 0.23862 2.84929 2.43386 2.70756 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.53331 3.02441 0.20344 2.88069 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.23862 2.84929 2.43386 2.70756 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.57915 2.25909 2.64442 0.28946 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.57915 2.25909 2.64442 0.28946 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.81865 0.23582 2.88868 2.35662 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.23862 2.84929 2.43386 2.70756 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 0.23862 2.84929 2.43386 2.70756 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.53331 3.02441 0.20344 2.88069 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.53331 3.02441 0.20344 2.88069 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.57915 2.25909 2.64442 0.28946 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 0.23862 2.84929 2.43386 2.70756 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.57915 2.25909 2.64442 0.28946 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.57915 2.25909 2.64442 0.28946 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.23862 2.84929 2.43386 2.70756 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.81865 0.23582 2.88868 2.35662 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.53331 3.02441 0.20344 2.88069 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.81865 0.23582 2.88868 2.35662 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.53331 3.02441 0.20344 2.88069 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.23862 2.84929 2.43386 2.70756 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 0.23862 2.84929 2.43386 2.70756 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.57915 2.25909 2.64442 0.28946 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.57915 2.25909 2.64442 0.28946 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.23862 2.84929 2.43386 2.70756 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.53331 3.02441 0.20344 2.88069 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.81865 0.23582 2.88868 2.35662 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.23862 2.84929 2.43386 2.70756 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Rhizaria_4_LSU_start_six_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 15:48:38 2012 NSEQ 2 EFFN 2.000000 CKSUM 403866154 STATS LOCAL MSV -7.4438 0.72795 STATS LOCAL VITERBI -8.2841 0.72795 STATS LOCAL FORWARD -3.4575 0.72795 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.40871 1.09677 1.57805 1.53611 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.81865 0.23582 2.88868 2.35662 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.53331 3.02441 0.20344 2.88069 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.53331 3.02441 0.20344 2.88069 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.57915 2.25909 2.64442 0.28946 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.57915 2.25909 2.64442 0.28946 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.81865 0.23582 2.88868 2.35662 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.81865 0.23582 2.88868 2.35662 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.53331 3.02441 0.20344 2.88069 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.57915 2.25909 2.64442 0.28946 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.81865 0.23582 2.88868 2.35662 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.81865 0.23582 2.88868 2.35662 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 0.23862 2.84929 2.43386 2.70756 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.57915 2.25909 2.64442 0.28946 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 0.23862 2.84929 2.43386 2.70756 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.81865 0.23582 2.88868 2.35662 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.23862 2.84929 2.43386 2.70756 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.57915 2.25909 2.64442 0.28946 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.23862 2.84929 2.43386 2.70756 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.81865 0.23582 2.88868 2.35662 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.53331 3.02441 0.20344 2.88069 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.81865 0.23582 2.88868 2.35662 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.53331 3.02441 0.20344 2.88069 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.23862 2.84929 2.43386 2.70756 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 0.23862 2.84929 2.43386 2.70756 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.81865 0.23582 2.88868 2.35662 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.57915 2.25909 2.64442 0.28946 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.23862 2.84929 2.43386 2.70756 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.53331 3.02441 0.20344 2.88069 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.81865 0.23582 2.88868 2.35662 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.23862 2.84929 2.43386 2.70756 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Rhizaria_4_LSU_start_three_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 15:48:01 2012 NSEQ 7 EFFN 3.387207 CKSUM 685879422 STATS LOCAL MSV -7.6313 0.71931 STATS LOCAL VITERBI -7.5788 0.71931 STATS LOCAL FORWARD -4.0483 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.10662 1.52111 1.60238 1.38853 1.38629 1.38629 1.38629 1.38629 0.03645 4.02306 4.02306 1.46634 0.26236 0.00000 * 1 3.10929 2.60829 3.15665 0.17538 1 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547 2 3.45664 0.12744 3.50510 2.84610 2 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547 3 3.10929 2.60829 3.15665 0.17538 3 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547 4 0.13923 3.40070 2.81518 3.30431 4 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547 5 2.96173 3.60845 0.11492 3.51528 5 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547 6 0.13923 3.40070 2.81518 3.30431 6 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547 7 3.10929 2.60829 3.15665 0.17538 7 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547 8 3.45664 0.12744 3.50510 2.84610 8 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547 9 3.10929 2.60829 3.15665 0.17538 9 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547 10 3.45664 0.12744 3.50510 2.84610 10 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547 11 0.13923 3.40070 2.81518 3.30431 11 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547 12 0.13923 3.40070 2.81518 3.30431 12 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547 13 0.13923 3.40070 2.81518 3.30431 13 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547 14 3.10929 2.60829 3.15665 0.17538 14 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547 15 2.96173 3.60845 0.11492 3.51528 15 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547 16 0.13923 3.40070 2.81518 3.30431 16 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547 17 2.96173 3.60845 0.11492 3.51528 17 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547 18 2.96173 3.60845 0.11492 3.51528 18 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547 19 3.10929 2.60829 3.15665 0.17538 19 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547 20 0.13923 3.40070 2.81518 3.30431 20 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547 21 0.13923 3.40070 2.81518 3.30431 21 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547 22 2.96173 3.60845 0.11492 3.51528 22 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547 23 0.13923 3.40070 2.81518 3.30431 23 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547 24 3.45664 0.12744 3.50510 2.84610 24 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547 25 3.10929 2.60829 3.15665 0.17538 25 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547 26 0.13923 3.40070 2.81518 3.30431 26 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547 27 3.45664 0.12744 3.50510 2.84610 27 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547 28 3.45664 0.12744 3.50510 2.84610 28 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547 29 3.45664 0.12744 3.50510 2.84610 29 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547 30 2.96173 3.60845 0.11492 3.51528 30 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547 31 3.45664 0.12744 3.50510 2.84610 31 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547 32 3.10929 2.60829 3.15665 0.17538 32 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547 33 2.96173 3.60845 0.11492 3.51528 33 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547 34 0.13923 3.40070 2.81518 3.30431 34 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547 35 0.13923 3.40070 2.81518 3.30431 35 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547 36 2.56748 1.47198 2.63418 0.47478 36 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547 37 3.10929 2.60829 3.15665 0.17538 37 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547 38 3.10929 2.60829 3.15665 0.17538 38 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547 39 0.13923 3.40070 2.81518 3.30431 39 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547 40 0.13923 3.40070 2.81518 3.30431 40 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547 41 2.96173 3.60845 0.11492 3.51528 41 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547 42 3.45664 0.12744 3.50510 2.84610 42 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547 43 0.13923 3.40070 2.81518 3.30431 43 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547 44 3.10929 2.60829 3.15665 0.17538 44 - - 1.38629 1.38629 1.38629 1.38629 0.03645 4.02306 4.02306 1.46634 0.26236 1.09861 0.40547 45 0.13923 3.40070 2.81518 3.30431 45 - - 1.38629 1.38629 1.38629 1.38629 0.01839 4.00500 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Rhizaria_4_LSU_start_two_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 15:47:48 2012 NSEQ 14 EFFN 3.359863 CKSUM 3152799616 STATS LOCAL MSV -8.0137 0.71932 STATS LOCAL VITERBI -7.4927 0.71932 STATS LOCAL FORWARD -4.0641 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.05417 1.49407 1.51699 1.57170 1.38629 1.38629 1.38629 1.38629 0.03664 4.01816 4.01816 1.46634 0.26236 0.00000 * 1 0.14034 3.39209 2.80960 3.29488 1 - - 1.38629 1.38629 1.38629 1.38629 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547 2 3.44674 0.12859 3.49562 2.83891 2 - - 1.38629 1.38629 1.38629 1.38629 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547 3 0.14034 3.39209 2.80960 3.29488 3 - - 1.38629 1.38629 1.38629 1.38629 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547 4 0.14034 3.39209 2.80960 3.29488 4 - - 1.38629 1.38629 1.38629 1.38629 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547 5 2.95576 3.59975 0.11586 3.50566 5 - - 1.38629 1.38629 1.38629 1.38629 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547 6 0.14034 3.39209 2.80960 3.29488 6 - - 1.38629 1.38629 1.38629 1.38629 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547 7 3.10057 2.60274 3.14826 0.17676 7 - - 1.38629 1.38629 1.38629 1.38629 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547 8 3.44674 0.12859 3.49562 2.83891 8 - - 1.38629 1.38629 1.38629 1.38629 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547 9 3.10057 2.60274 3.14826 0.17676 9 - - 1.38629 1.38629 1.38629 1.38629 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547 10 3.44674 0.12859 3.49562 2.83891 10 - - 1.38629 1.38629 1.38629 1.38629 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547 11 0.14034 3.39209 2.80960 3.29488 11 - - 1.38629 1.38629 1.38629 1.38629 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547 12 2.95576 3.59975 0.11586 3.50566 12 - - 1.38629 1.38629 1.38629 1.38629 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547 13 0.14034 3.39209 2.80960 3.29488 13 - - 1.38629 1.38629 1.38629 1.38629 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547 14 3.10057 2.60274 3.14826 0.17676 14 - - 1.38629 1.38629 1.38629 1.38629 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547 15 2.95576 3.59975 0.11586 3.50566 15 - - 1.38629 1.38629 1.38629 1.38629 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547 16 0.14034 3.39209 2.80960 3.29488 16 - - 1.38629 1.38629 1.38629 1.38629 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547 17 2.95576 3.59975 0.11586 3.50566 17 - - 1.38629 1.38629 1.38629 1.38629 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547 18 2.95576 3.59975 0.11586 3.50566 18 - - 1.38629 1.38629 1.38629 1.38629 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547 19 3.10057 2.60274 3.14826 0.17676 19 - - 1.38629 1.38629 1.38629 1.38629 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547 20 0.14034 3.39209 2.80960 3.29488 20 - - 1.38629 1.38629 1.38629 1.38629 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547 21 0.14034 3.39209 2.80960 3.29488 21 - - 1.38629 1.38629 1.38629 1.38629 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547 22 2.95576 3.59975 0.11586 3.50566 22 - - 1.38629 1.38629 1.38629 1.38629 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547 23 0.14034 3.39209 2.80960 3.29488 23 - - 1.38629 1.38629 1.38629 1.38629 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547 24 2.88818 0.29626 2.95301 1.90684 24 - - 1.38629 1.38629 1.38629 1.38629 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547 25 3.10057 2.60274 3.14826 0.17676 25 - - 1.38629 1.38629 1.38629 1.38629 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547 26 0.14034 3.39209 2.80960 3.29488 26 - - 1.38629 1.38629 1.38629 1.38629 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547 27 3.44674 0.12859 3.49562 2.83891 27 - - 1.38629 1.38629 1.38629 1.38629 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547 28 3.44674 0.12859 3.49562 2.83891 28 - - 1.38629 1.38629 1.38629 1.38629 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547 29 3.44674 0.12859 3.49562 2.83891 29 - - 1.38629 1.38629 1.38629 1.38629 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547 30 2.95576 3.59975 0.11586 3.50566 30 - - 1.38629 1.38629 1.38629 1.38629 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547 31 3.44674 0.12859 3.49562 2.83891 31 - - 1.38629 1.38629 1.38629 1.38629 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547 32 2.88818 0.29626 2.95301 1.90684 32 - - 1.38629 1.38629 1.38629 1.38629 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547 33 2.95576 3.59975 0.11586 3.50566 33 - - 1.38629 1.38629 1.38629 1.38629 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547 34 0.14034 3.39209 2.80960 3.29488 34 - - 1.38629 1.38629 1.38629 1.38629 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547 35 0.14034 3.39209 2.80960 3.29488 35 - - 1.38629 1.38629 1.38629 1.38629 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547 36 3.10057 2.60274 3.14826 0.17676 36 - - 1.38629 1.38629 1.38629 1.38629 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547 37 3.10057 2.60274 3.14826 0.17676 37 - - 1.38629 1.38629 1.38629 1.38629 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547 38 3.10057 2.60274 3.14826 0.17676 38 - - 1.38629 1.38629 1.38629 1.38629 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547 39 0.14034 3.39209 2.80960 3.29488 39 - - 1.38629 1.38629 1.38629 1.38629 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547 40 0.14034 3.39209 2.80960 3.29488 40 - - 1.38629 1.38629 1.38629 1.38629 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547 41 2.95576 3.59975 0.11586 3.50566 41 - - 1.38629 1.38629 1.38629 1.38629 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547 42 3.44674 0.12859 3.49562 2.83891 42 - - 1.38629 1.38629 1.38629 1.38629 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547 43 0.14034 3.39209 2.80960 3.29488 43 - - 1.38629 1.38629 1.38629 1.38629 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547 44 3.10057 2.60274 3.14826 0.17676 44 - - 1.38629 1.38629 1.38629 1.38629 0.03664 4.01816 4.01816 1.46634 0.26236 1.09861 0.40547 45 0.14034 3.39209 2.80960 3.29488 45 - - 1.38629 1.38629 1.38629 1.38629 0.01849 4.00001 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Rhizaria_4_LSU_start_eight_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 7 01:12:25 2012 NSEQ 3 EFFN 3.000000 CKSUM 731854382 STATS LOCAL MSV -8.0759 0.72023 STATS LOCAL VITERBI -7.8499 0.72023 STATS LOCAL FORWARD -3.7973 0.72023 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.28009 1.32699 1.44837 1.50615 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 3.30705 0.14631 3.36166 2.73626 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 0.15719 3.27118 2.73043 3.16274 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 3.30705 0.14631 3.36166 2.73626 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 2.86982 3.47591 0.13017 3.36931 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.97980 2.52563 3.03204 0.19727 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 3.30705 0.14631 3.36166 2.73626 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 3.30705 0.14631 3.36166 2.73626 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 2.97980 2.52563 3.03204 0.19727 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 2.86982 3.47591 0.13017 3.36931 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 3.30705 0.14631 3.36166 2.73626 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 2.86982 3.47591 0.13017 3.36931 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 3.30705 0.14631 3.36166 2.73626 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 2.97980 2.52563 3.03204 0.19727 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 0.15719 3.27118 2.73043 3.16274 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 2.86982 3.47591 0.13017 3.36931 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 0.15719 3.27118 2.73043 3.16274 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 2.86982 3.47591 0.13017 3.36931 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 2.97980 2.52563 3.03204 0.19727 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 0.15719 3.27118 2.73043 3.16274 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 0.15719 3.27118 2.73043 3.16274 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 2.86982 3.47591 0.13017 3.36931 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 0.15719 3.27118 2.73043 3.16274 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 2.86982 3.47591 0.13017 3.36931 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 2.97980 2.52563 3.03204 0.19727 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 0.15719 3.27118 2.73043 3.16274 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 3.30705 0.14631 3.36166 2.73626 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 3.30705 0.14631 3.36166 2.73626 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 3.30705 0.14631 3.36166 2.73626 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 2.86982 3.47591 0.13017 3.36931 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 3.30705 0.14631 3.36166 2.73626 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 2.97980 2.52563 3.03204 0.19727 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 2.86982 3.47591 0.13017 3.36931 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 0.15719 3.27118 2.73043 3.16274 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 0.15719 3.27118 2.73043 3.16274 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 3.30705 0.14631 3.36166 2.73626 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 2.97980 2.52563 3.03204 0.19727 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 2.97980 2.52563 3.03204 0.19727 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 0.15719 3.27118 2.73043 3.16274 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 0.15719 3.27118 2.73043 3.16274 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 2.86982 3.47591 0.13017 3.36931 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 3.30705 0.14631 3.36166 2.73626 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 0.15719 3.27118 2.73043 3.16274 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 2.97980 2.52563 3.03204 0.19727 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 0.15719 3.27118 2.73043 3.16274 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 2.97980 2.52563 3.03204 0.19727 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Rhizaria_4_LSU_start_eleven_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 7 01:12:42 2012 NSEQ 9 EFFN 3.186035 CKSUM 3916008225 STATS LOCAL MSV -8.0561 0.71933 STATS LOCAL VITERBI -7.8429 0.71933 STATS LOCAL FORWARD -3.9050 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.15899 1.72776 1.18469 1.59616 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 0.00000 * 1 2.91604 3.54214 0.12228 3.44213 1 - - 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 2 0.14795 3.33550 2.77275 3.23296 2 - - 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 3 3.04365 2.56650 3.09351 0.18610 3 - - 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 4 3.04365 2.56650 3.09351 0.18610 4 - - 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 5 2.91604 3.54214 0.12228 3.44213 5 - - 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 6 0.14795 3.33550 2.77275 3.23296 6 - - 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 7 3.38146 0.13654 3.43308 2.79124 7 - - 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 8 3.38146 0.13654 3.43308 2.79124 8 - - 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 9 3.04365 2.56650 3.09351 0.18610 9 - - 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 10 2.91604 3.54214 0.12228 3.44213 10 - - 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 11 0.14795 3.33550 2.77275 3.23296 11 - - 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 12 0.14795 3.33550 2.77275 3.23296 12 - - 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 13 2.91604 3.54214 0.12228 3.44213 13 - - 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 14 3.04365 2.56650 3.09351 0.18610 14 - - 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 15 2.91604 3.54214 0.12228 3.44213 15 - - 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 16 0.14795 3.33550 2.77275 3.23296 16 - - 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 17 2.91604 3.54214 0.12228 3.44213 17 - - 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 18 2.91604 3.54214 0.12228 3.44213 18 - - 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 19 3.04365 2.56650 3.09351 0.18610 19 - - 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 20 0.14795 3.33550 2.77275 3.23296 20 - - 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 21 0.14795 3.33550 2.77275 3.23296 21 - - 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 22 2.91604 3.54214 0.12228 3.44213 22 - - 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 23 0.14795 3.33550 2.77275 3.23296 23 - - 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 24 2.91604 3.54214 0.12228 3.44213 24 - - 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 25 2.91604 3.54214 0.12228 3.44213 25 - - 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 26 0.14795 3.33550 2.77275 3.23296 26 - - 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 27 3.38146 0.13654 3.43308 2.79124 27 - - 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 28 3.38146 0.13654 3.43308 2.79124 28 - - 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 29 2.91604 3.54214 0.12228 3.44213 29 - - 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 30 2.91604 3.54214 0.12228 3.44213 30 - - 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 31 3.38146 0.13654 3.43308 2.79124 31 - - 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 32 3.38146 0.13654 3.43308 2.79124 32 - - 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 33 2.91604 3.54214 0.12228 3.44213 33 - - 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 34 0.14795 3.33550 2.77275 3.23296 34 - - 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 35 0.14795 3.33550 2.77275 3.23296 35 - - 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 36 3.04365 2.56650 3.09351 0.18610 36 - - 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 37 3.04365 2.56650 3.09351 0.18610 37 - - 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 38 3.04365 2.56650 3.09351 0.18610 38 - - 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 39 0.14795 3.33550 2.77275 3.23296 39 - - 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 40 0.14795 3.33550 2.77275 3.23296 40 - - 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 41 2.91604 3.54214 0.12228 3.44213 41 - - 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 42 3.38146 0.13654 3.43308 2.79124 42 - - 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 43 0.14795 3.33550 2.77275 3.23296 43 - - 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 44 3.04365 2.56650 3.09351 0.18610 44 - - 1.38629 1.38629 1.38629 1.38629 0.03784 3.98639 3.98639 1.46634 0.26236 1.09861 0.40547 45 0.14795 3.33550 2.77275 3.23296 45 - - 1.38629 1.38629 1.38629 1.38629 0.01910 3.96765 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Rhizaria_4_LSU_start_fiveb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 7 01:11:06 2012 NSEQ 8 EFFN 3.277344 CKSUM 3075067396 STATS LOCAL MSV -8.2566 0.71933 STATS LOCAL VITERBI -7.5856 0.71933 STATS LOCAL FORWARD -4.0430 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.05761 1.62227 1.51735 1.44404 1.38629 1.38629 1.38629 1.38629 0.03720 4.00321 4.00321 1.46634 0.26236 0.00000 * 1 3.41625 0.13224 3.46642 2.81671 1 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547 2 0.14384 3.36564 2.79241 3.26592 2 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547 3 0.14384 3.36564 2.79241 3.26592 3 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547 4 0.14384 3.36564 2.79241 3.26592 4 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547 5 2.93730 3.57289 0.11880 3.47603 5 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547 6 0.14384 3.36564 2.79241 3.26592 6 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547 7 3.07387 2.58576 3.12259 0.18107 7 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547 8 3.41625 0.13224 3.46642 2.81671 8 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547 9 3.07387 2.58576 3.12259 0.18107 9 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547 10 3.41625 0.13224 3.46642 2.81671 10 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547 11 0.14384 3.36564 2.79241 3.26592 11 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547 12 0.14384 3.36564 2.79241 3.26592 12 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547 13 0.14384 3.36564 2.79241 3.26592 13 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547 14 3.07387 2.58576 3.12259 0.18107 14 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547 15 2.93730 3.57289 0.11880 3.47603 15 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547 16 0.14384 3.36564 2.79241 3.26592 16 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547 17 2.93730 3.57289 0.11880 3.47603 17 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547 18 2.93730 3.57289 0.11880 3.47603 18 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547 19 3.07387 2.58576 3.12259 0.18107 19 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547 20 0.14384 3.36564 2.79241 3.26592 20 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547 21 2.93730 3.57289 0.11880 3.47603 21 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547 22 2.93730 3.57289 0.11880 3.47603 22 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547 23 0.14384 3.36564 2.79241 3.26592 23 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547 24 3.07387 2.58576 3.12259 0.18107 24 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547 25 3.07387 2.58576 3.12259 0.18107 25 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547 26 0.14384 3.36564 2.79241 3.26592 26 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547 27 3.41625 0.13224 3.46642 2.81671 27 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547 28 3.41625 0.13224 3.46642 2.81671 28 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547 29 3.41625 0.13224 3.46642 2.81671 29 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547 30 2.93730 3.57289 0.11880 3.47603 30 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547 31 3.41625 0.13224 3.46642 2.81671 31 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547 32 3.07387 2.58576 3.12259 0.18107 32 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547 33 2.93730 3.57289 0.11880 3.47603 33 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547 34 0.14384 3.36564 2.79241 3.26592 34 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547 35 0.14384 3.36564 2.79241 3.26592 35 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547 36 3.07387 2.58576 3.12259 0.18107 36 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547 37 3.07387 2.58576 3.12259 0.18107 37 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547 38 3.07387 2.58576 3.12259 0.18107 38 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547 39 0.14384 3.36564 2.79241 3.26592 39 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547 40 0.14384 3.36564 2.79241 3.26592 40 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547 41 2.93730 3.57289 0.11880 3.47603 41 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547 42 3.41625 0.13224 3.46642 2.81671 42 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547 43 0.14384 3.36564 2.79241 3.26592 43 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547 44 3.07387 2.58576 3.12259 0.18107 44 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00321 4.00321 1.46634 0.26236 1.09861 0.40547 45 0.14384 3.36564 2.79241 3.26592 45 - - 1.38629 1.38629 1.38629 1.38629 0.01877 3.98478 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Rhizaria_4_LSU_start_seven_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 7 01:12:14 2012 NSEQ 8 EFFN 3.433594 CKSUM 2840026670 STATS LOCAL MSV -7.5443 0.71933 STATS LOCAL VITERBI -7.7493 0.71933 STATS LOCAL FORWARD -3.7240 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.06709 1.60222 1.43710 1.52819 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 0.00000 * 1 0.13738 3.41512 2.82452 3.32011 1 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 2 0.49961 1.66480 2.29793 2.26785 2 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 3 0.13738 3.41512 2.82452 3.32011 3 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 4 0.13738 3.41512 2.82452 3.32011 4 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 5 2.97169 3.62301 0.11337 3.53137 5 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 6 3.12394 2.61759 3.17074 0.17309 6 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 7 3.47324 0.12552 3.52097 2.85812 7 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 8 3.12394 2.61759 3.17074 0.17309 8 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 9 3.47324 0.12552 3.52097 2.85812 9 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 10 0.13738 3.41512 2.82452 3.32011 10 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 11 0.13738 3.41512 2.82452 3.32011 11 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 12 2.97169 3.62301 0.11337 3.53137 12 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 13 3.12394 2.61759 3.17074 0.17309 13 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 14 2.97169 3.62301 0.11337 3.53137 14 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 15 0.13738 3.41512 2.82452 3.32011 15 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 16 0.13738 3.41512 2.82452 3.32011 16 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 17 2.97169 3.62301 0.11337 3.53137 17 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 18 2.62679 1.57386 2.69172 0.42666 18 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 19 0.13738 3.41512 2.82452 3.32011 19 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 20 0.13738 3.41512 2.82452 3.32011 20 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 21 2.97169 3.62301 0.11337 3.53137 21 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 22 2.97169 3.62301 0.11337 3.53137 22 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 23 3.47324 0.12552 3.52097 2.85812 23 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 24 2.97169 3.62301 0.11337 3.53137 24 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 25 0.13738 3.41512 2.82452 3.32011 25 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 26 3.47324 0.12552 3.52097 2.85812 26 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 27 3.47324 0.12552 3.52097 2.85812 27 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 28 3.47324 0.12552 3.52097 2.85812 28 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 29 2.97169 3.62301 0.11337 3.53137 29 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 30 3.47324 0.12552 3.52097 2.85812 30 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 31 3.12394 2.61759 3.17074 0.17309 31 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 32 2.97169 3.62301 0.11337 3.53137 32 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 33 0.13738 3.41512 2.82452 3.32011 33 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 34 0.13738 3.41512 2.82452 3.32011 34 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 35 3.12394 2.61759 3.17074 0.17309 35 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 36 3.12394 2.61759 3.17074 0.17309 36 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 37 3.12394 2.61759 3.17074 0.17309 37 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 38 0.13738 3.41512 2.82452 3.32011 38 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 39 0.13738 3.41512 2.82452 3.32011 39 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 40 2.97169 3.62301 0.11337 3.53137 40 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 41 3.47324 0.12552 3.52097 2.85812 41 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 42 0.13738 3.41512 2.82452 3.32011 42 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 43 3.12394 2.61759 3.17074 0.17309 43 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 44 0.13738 3.41512 2.82452 3.32011 44 - - 1.38629 1.38629 1.38629 1.38629 0.03615 4.03133 4.03133 1.46634 0.26236 1.09861 0.40547 45 3.12394 2.61759 3.17074 0.17309 45 - - 1.38629 1.38629 1.38629 1.38629 0.01824 4.01342 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Rhizaria_4_LSU_start_sixb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 7 01:11:19 2012 NSEQ 2 EFFN 2.000000 CKSUM 2457692988 STATS LOCAL MSV -7.5215 0.72807 STATS LOCAL VITERBI -8.1900 0.72807 STATS LOCAL FORWARD -3.3812 0.72807 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 0.97738 1.41032 1.70842 1.61703 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 0.23862 2.84929 2.43386 2.70756 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.23862 2.84929 2.43386 2.70756 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.23862 2.84929 2.43386 2.70756 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 0.23862 2.84929 2.43386 2.70756 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.53331 3.02441 0.20344 2.88069 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.23862 2.84929 2.43386 2.70756 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.57915 2.25909 2.64442 0.28946 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.81865 0.23582 2.88868 2.35662 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.23862 2.84929 2.43386 2.70756 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.81865 0.23582 2.88868 2.35662 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 0.23862 2.84929 2.43386 2.70756 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.23862 2.84929 2.43386 2.70756 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.53331 3.02441 0.20344 2.88069 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.57915 2.25909 2.64442 0.28946 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.23862 2.84929 2.43386 2.70756 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 0.23862 2.84929 2.43386 2.70756 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.57915 2.25909 2.64442 0.28946 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.81865 0.23582 2.88868 2.35662 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.23862 2.84929 2.43386 2.70756 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.81865 0.23582 2.88868 2.35662 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.53331 3.02441 0.20344 2.88069 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.81865 0.23582 2.88868 2.35662 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.53331 3.02441 0.20344 2.88069 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.23862 2.84929 2.43386 2.70756 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 0.23862 2.84929 2.43386 2.70756 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.81865 0.23582 2.88868 2.35662 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.57915 2.25909 2.64442 0.28946 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.23862 2.84929 2.43386 2.70756 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.53331 3.02441 0.20344 2.88069 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.81865 0.23582 2.88868 2.35662 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.23862 2.84929 2.43386 2.70756 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Rhizaria_4_LSU_start_ten_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 15:56:55 2012 NSEQ 23 EFFN 3.220337 CKSUM 656820074 STATS LOCAL MSV -8.1133 0.71932 STATS LOCAL VITERBI -7.8470 0.71932 STATS LOCAL FORWARD -4.0798 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.10983 1.47054 1.44208 1.58890 1.38629 1.38629 1.38629 1.38629 0.03760 3.99274 3.99274 1.46634 0.26236 0.00000 * 1 0.14638 3.34693 2.78022 3.24546 1 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547 2 2.92413 3.55382 0.12094 3.45500 2 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547 3 2.92413 3.55382 0.12094 3.45500 3 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547 4 3.39466 0.13489 3.44573 2.80092 4 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547 5 0.14638 3.34693 2.78022 3.24546 5 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547 6 3.39466 0.13489 3.44573 2.80092 6 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547 7 0.14638 3.34693 2.78022 3.24546 7 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547 8 3.05509 2.57380 3.10452 0.18418 8 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547 9 3.39466 0.13489 3.44573 2.80092 9 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547 10 0.14638 3.34693 2.78022 3.24546 10 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547 11 2.92413 3.55382 0.12094 3.45500 11 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547 12 3.39466 0.13489 3.44573 2.80092 12 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547 13 3.05509 2.57380 3.10452 0.18418 13 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547 14 3.39466 0.13489 3.44573 2.80092 14 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547 15 2.92413 3.55382 0.12094 3.45500 15 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547 16 0.14638 3.34693 2.78022 3.24546 16 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547 17 2.92413 3.55382 0.12094 3.45500 17 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547 18 3.05509 2.57380 3.10452 0.18418 18 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547 19 2.92413 3.55382 0.12094 3.45500 19 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547 20 0.14638 3.34693 2.78022 3.24546 20 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547 21 2.92413 3.55382 0.12094 3.45500 21 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547 22 2.92413 3.55382 0.12094 3.45500 22 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547 23 0.14638 3.34693 2.78022 3.24546 23 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547 24 3.05509 2.57380 3.10452 0.18418 24 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547 25 0.14638 3.34693 2.78022 3.24546 25 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547 26 3.39466 0.13489 3.44573 2.80092 26 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547 27 2.92413 3.55382 0.12094 3.45500 27 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547 28 3.39466 0.13489 3.44573 2.80092 28 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547 29 2.92413 3.55382 0.12094 3.45500 29 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547 30 3.39466 0.13489 3.44573 2.80092 30 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547 31 3.05509 2.57380 3.10452 0.18418 31 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547 32 0.14638 3.34693 2.78022 3.24546 32 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547 33 0.14638 3.34693 2.78022 3.24546 33 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547 34 0.14638 3.34693 2.78022 3.24546 34 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547 35 3.39466 0.13489 3.44573 2.80092 35 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547 36 3.05509 2.57380 3.10452 0.18418 36 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547 37 3.05509 2.57380 3.10452 0.18418 37 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547 38 0.14638 3.34693 2.78022 3.24546 38 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547 39 0.14638 3.34693 2.78022 3.24546 39 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547 40 0.14638 3.34693 2.78022 3.24546 40 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547 41 3.39466 0.13489 3.44573 2.80092 41 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547 42 0.14638 3.34693 2.78022 3.24546 42 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547 43 3.05509 2.57380 3.10452 0.18418 43 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547 44 0.14638 3.34693 2.78022 3.24546 44 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99274 3.99274 1.46634 0.26236 1.09861 0.40547 45 3.05509 2.57380 3.10452 0.18418 45 - - 1.38629 1.38629 1.38629 1.38629 0.01897 3.97412 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Rhizaria_4_LSU_start_threeb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 7 01:10:48 2012 NSEQ 2 EFFN 2.000000 CKSUM 599151012 STATS LOCAL MSV -7.4804 0.72817 STATS LOCAL VITERBI -8.1165 0.72817 STATS LOCAL FORWARD -3.4979 0.72817 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.09588 1.59613 1.48788 1.43875 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 0.23862 2.84929 2.43386 2.70756 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.23862 2.84929 2.43386 2.70756 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 0.23862 2.84929 2.43386 2.70756 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.53331 3.02441 0.20344 2.88069 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.23862 2.84929 2.43386 2.70756 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.57915 2.25909 2.64442 0.28946 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.57915 2.25909 2.64442 0.28946 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.81865 0.23582 2.88868 2.35662 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.53331 3.02441 0.20344 2.88069 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 0.23862 2.84929 2.43386 2.70756 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.53331 3.02441 0.20344 2.88069 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.53331 3.02441 0.20344 2.88069 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.57915 2.25909 2.64442 0.28946 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.23862 2.84929 2.43386 2.70756 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 0.23862 2.84929 2.43386 2.70756 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.57915 2.25909 2.64442 0.28946 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.57915 2.25909 2.64442 0.28946 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.23862 2.84929 2.43386 2.70756 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.81865 0.23582 2.88868 2.35662 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.53331 3.02441 0.20344 2.88069 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.81865 0.23582 2.88868 2.35662 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.53331 3.02441 0.20344 2.88069 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.23862 2.84929 2.43386 2.70756 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 0.23862 2.84929 2.43386 2.70756 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.57915 2.25909 2.64442 0.28946 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.57915 2.25909 2.64442 0.28946 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.23862 2.84929 2.43386 2.70756 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.53331 3.02441 0.20344 2.88069 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.81865 0.23582 2.88868 2.35662 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.23862 2.84929 2.43386 2.70756 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 1_SSU_Rhizaria_1_SSU_end_eight_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 7 02:47:07 2012 NSEQ 9 EFFN 3.344238 CKSUM 2541343808 STATS LOCAL MSV -8.0722 0.71932 STATS LOCAL VITERBI -7.8311 0.71932 STATS LOCAL FORWARD -4.0456 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.09860 1.66560 1.29697 1.58852 1.38629 1.38629 1.38629 1.38629 0.03674 4.01534 4.01534 1.46634 0.26236 0.00000 * 1 0.14099 3.38714 2.80639 3.28946 1 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547 2 2.95232 3.59473 0.11640 3.50012 2 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547 3 3.09556 2.59956 3.14345 0.17756 3 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547 4 3.44103 0.12927 3.49015 2.83476 4 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547 5 2.95232 3.59473 0.11640 3.50012 5 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547 6 3.09556 2.59956 3.14345 0.17756 6 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547 7 0.14099 3.38714 2.80639 3.28946 7 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547 8 0.14099 3.38714 2.80639 3.28946 8 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547 9 3.44103 0.12927 3.49015 2.83476 9 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547 10 0.14099 3.38714 2.80639 3.28946 10 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547 11 0.14099 3.38714 2.80639 3.28946 11 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547 12 2.95232 3.59473 0.11640 3.50012 12 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547 13 2.95232 3.59473 0.11640 3.50012 13 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547 14 3.44103 0.12927 3.49015 2.83476 14 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547 15 0.14099 3.38714 2.80639 3.28946 15 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547 16 3.09556 2.59956 3.14345 0.17756 16 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547 17 3.44103 0.12927 3.49015 2.83476 17 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547 18 0.14099 3.38714 2.80639 3.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547 19 2.95232 3.59473 0.11640 3.50012 19 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547 20 3.09556 2.59956 3.14345 0.17756 20 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547 21 0.14099 3.38714 2.80639 3.28946 21 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547 22 2.95232 3.59473 0.11640 3.50012 22 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547 23 2.95232 3.59473 0.11640 3.50012 23 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547 24 3.09556 2.59956 3.14345 0.17756 24 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547 25 2.95232 3.59473 0.11640 3.50012 25 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547 26 0.14099 3.38714 2.80639 3.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547 27 0.14099 3.38714 2.80639 3.28946 27 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547 28 2.71758 0.29638 2.29202 2.41461 28 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547 29 3.44103 0.12927 3.49015 2.83476 29 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547 30 3.09556 2.59956 3.14345 0.17756 30 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547 31 2.95232 3.59473 0.11640 3.50012 31 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547 32 3.44103 0.12927 3.49015 2.83476 32 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547 33 0.14099 3.38714 2.80639 3.28946 33 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547 34 2.95232 3.59473 0.11640 3.50012 34 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547 35 0.14099 3.38714 2.80639 3.28946 35 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547 36 0.14099 3.38714 2.80639 3.28946 36 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547 37 2.95232 3.59473 0.11640 3.50012 37 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547 38 2.95232 3.59473 0.11640 3.50012 38 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547 39 0.14099 3.38714 2.80639 3.28946 39 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547 40 3.09556 2.59956 3.14345 0.17756 40 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547 41 2.22549 0.30216 2.77330 2.40447 41 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547 42 0.14099 3.38714 2.80639 3.28946 42 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547 43 3.09556 2.59956 3.14345 0.17756 43 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547 44 3.09556 2.59956 3.14345 0.17756 44 - - 1.38629 1.38629 1.38629 1.38629 0.03674 4.01534 4.01534 1.46634 0.26236 1.09861 0.40547 45 0.14099 3.38714 2.80639 3.28946 45 - - 1.38629 1.38629 1.38629 1.38629 0.01854 3.99714 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 1_SSU_Rhizaria_1_SSU_end_five_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 7 02:46:45 2012 NSEQ 28 EFFN 3.202637 CKSUM 173814394 STATS LOCAL MSV -7.9514 0.71931 STATS LOCAL VITERBI -7.8681 0.71931 STATS LOCAL FORWARD -3.8589 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.15846 1.63373 1.24319 1.59767 1.38629 1.38629 1.38629 1.38629 0.03772 3.98947 3.98947 1.46634 0.26236 0.00000 * 1 0.14718 3.34105 2.77638 3.23903 1 - - 1.38629 1.38629 1.38629 1.38629 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547 2 2.91997 3.54781 0.12163 3.44838 2 - - 1.38629 1.38629 1.38629 1.38629 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547 3 3.04920 2.57004 3.09885 0.18516 3 - - 1.38629 1.38629 1.38629 1.38629 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547 4 3.38787 0.13574 3.43922 2.79594 4 - - 1.38629 1.38629 1.38629 1.38629 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547 5 2.91997 3.54781 0.12163 3.44838 5 - - 1.38629 1.38629 1.38629 1.38629 0.08261 3.98947 2.80042 1.46634 0.26236 1.09861 0.40547 6 2.97071 2.51979 3.02329 0.19892 6 - - 1.38629 1.38629 1.38629 1.38629 0.03942 3.94628 3.94628 1.46634 0.26236 0.47562 0.97153 7 0.14718 3.34105 2.77638 3.23903 7 - - 1.38629 1.38629 1.38629 1.38629 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547 8 0.14718 3.34105 2.77638 3.23903 8 - - 1.38629 1.38629 1.38629 1.38629 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547 9 3.38787 0.13574 3.43922 2.79594 9 - - 1.38629 1.38629 1.38629 1.38629 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547 10 0.14718 3.34105 2.77638 3.23903 10 - - 1.38629 1.38629 1.38629 1.38629 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547 11 0.14718 3.34105 2.77638 3.23903 11 - - 1.38629 1.38629 1.38629 1.38629 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547 12 2.91997 3.54781 0.12163 3.44838 12 - - 1.38629 1.38629 1.38629 1.38629 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547 13 2.91997 3.54781 0.12163 3.44838 13 - - 1.38629 1.38629 1.38629 1.38629 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547 14 3.38787 0.13574 3.43922 2.79594 14 - - 1.38629 1.38629 1.38629 1.38629 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547 15 0.14718 3.34105 2.77638 3.23903 15 - - 1.38629 1.38629 1.38629 1.38629 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547 16 3.04920 2.57004 3.09885 0.18516 16 - - 1.38629 1.38629 1.38629 1.38629 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547 17 3.38787 0.13574 3.43922 2.79594 17 - - 1.38629 1.38629 1.38629 1.38629 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547 18 2.91997 3.54781 0.12163 3.44838 18 - - 1.38629 1.38629 1.38629 1.38629 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547 19 2.91997 3.54781 0.12163 3.44838 19 - - 1.38629 1.38629 1.38629 1.38629 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547 20 3.04920 2.57004 3.09885 0.18516 20 - - 1.38629 1.38629 1.38629 1.38629 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547 21 0.14718 3.34105 2.77638 3.23903 21 - - 1.38629 1.38629 1.38629 1.38629 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547 22 2.91997 3.54781 0.12163 3.44838 22 - - 1.38629 1.38629 1.38629 1.38629 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547 23 2.91997 3.54781 0.12163 3.44838 23 - - 1.38629 1.38629 1.38629 1.38629 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547 24 3.04920 2.57004 3.09885 0.18516 24 - - 1.38629 1.38629 1.38629 1.38629 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547 25 2.91997 3.54781 0.12163 3.44838 25 - - 1.38629 1.38629 1.38629 1.38629 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547 26 0.14718 3.34105 2.77638 3.23903 26 - - 1.38629 1.38629 1.38629 1.38629 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547 27 0.14718 3.34105 2.77638 3.23903 27 - - 1.38629 1.38629 1.38629 1.38629 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547 28 3.38787 0.13574 3.43922 2.79594 28 - - 1.38629 1.38629 1.38629 1.38629 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547 29 3.38787 0.13574 3.43922 2.79594 29 - - 1.38629 1.38629 1.38629 1.38629 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547 30 3.04920 2.57004 3.09885 0.18516 30 - - 1.38629 1.38629 1.38629 1.38629 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547 31 2.91997 3.54781 0.12163 3.44838 31 - - 1.38629 1.38629 1.38629 1.38629 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547 32 3.38787 0.13574 3.43922 2.79594 32 - - 1.38629 1.38629 1.38629 1.38629 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547 33 0.14718 3.34105 2.77638 3.23903 33 - - 1.38629 1.38629 1.38629 1.38629 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547 34 2.91997 3.54781 0.12163 3.44838 34 - - 1.38629 1.38629 1.38629 1.38629 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547 35 0.14718 3.34105 2.77638 3.23903 35 - - 1.38629 1.38629 1.38629 1.38629 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547 36 0.14718 3.34105 2.77638 3.23903 36 - - 1.38629 1.38629 1.38629 1.38629 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547 37 2.91997 3.54781 0.12163 3.44838 37 - - 1.38629 1.38629 1.38629 1.38629 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547 38 2.91997 3.54781 0.12163 3.44838 38 - - 1.38629 1.38629 1.38629 1.38629 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547 39 0.14718 3.34105 2.77638 3.23903 39 - - 1.38629 1.38629 1.38629 1.38629 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547 40 3.04920 2.57004 3.09885 0.18516 40 - - 1.38629 1.38629 1.38629 1.38629 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547 41 3.38787 0.13574 3.43922 2.79594 41 - - 1.38629 1.38629 1.38629 1.38629 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547 42 0.14718 3.34105 2.77638 3.23903 42 - - 1.38629 1.38629 1.38629 1.38629 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547 43 3.04920 2.57004 3.09885 0.18516 43 - - 1.38629 1.38629 1.38629 1.38629 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547 44 3.04920 2.57004 3.09885 0.18516 44 - - 1.38629 1.38629 1.38629 1.38629 0.03772 3.98947 3.98947 1.46634 0.26236 1.09861 0.40547 45 0.14718 3.34105 2.77638 3.23903 45 - - 1.38629 1.38629 1.38629 1.38629 0.01904 3.97079 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 1_SSU_Rhizaria_1_SSU_end_four_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 7 02:46:30 2012 NSEQ 6 EFFN 3.325195 CKSUM 4117779485 STATS LOCAL MSV -8.0198 0.71933 STATS LOCAL VITERBI -7.7895 0.71933 STATS LOCAL FORWARD -3.9838 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.13372 1.63099 1.27909 1.58896 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 0.00000 * 1 0.14179 3.38107 2.80245 3.28281 1 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 2 2.94809 3.58857 0.11707 3.49333 2 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 3 3.08942 2.59566 3.13755 0.17855 3 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 4 3.43404 0.13010 3.48346 2.82967 4 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 5 2.94809 3.58857 0.11707 3.49333 5 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 6 3.08942 2.59566 3.13755 0.17855 6 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 7 0.14179 3.38107 2.80245 3.28281 7 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 8 0.14179 3.38107 2.80245 3.28281 8 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 9 3.43404 0.13010 3.48346 2.82967 9 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 10 0.14179 3.38107 2.80245 3.28281 10 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 11 0.14179 3.38107 2.80245 3.28281 11 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 12 2.94809 3.58857 0.11707 3.49333 12 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 13 2.94809 3.58857 0.11707 3.49333 13 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 14 3.43404 0.13010 3.48346 2.82967 14 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 15 0.14179 3.38107 2.80245 3.28281 15 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 16 3.08942 2.59566 3.13755 0.17855 16 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 17 3.43404 0.13010 3.48346 2.82967 17 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 18 0.86143 2.51567 0.90836 2.37033 18 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 19 2.94809 3.58857 0.11707 3.49333 19 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 20 3.08942 2.59566 3.13755 0.17855 20 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 21 0.14179 3.38107 2.80245 3.28281 21 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 22 2.94809 3.58857 0.11707 3.49333 22 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 23 2.94809 3.58857 0.11707 3.49333 23 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 24 3.08942 2.59566 3.13755 0.17855 24 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 25 2.94809 3.58857 0.11707 3.49333 25 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 26 0.14179 3.38107 2.80245 3.28281 26 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 27 0.14179 3.38107 2.80245 3.28281 27 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 28 3.43404 0.13010 3.48346 2.82967 28 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 29 3.43404 0.13010 3.48346 2.82967 29 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 30 3.08942 2.59566 3.13755 0.17855 30 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 31 2.94809 3.58857 0.11707 3.49333 31 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 32 3.43404 0.13010 3.48346 2.82967 32 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 33 0.14179 3.38107 2.80245 3.28281 33 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 34 2.94809 3.58857 0.11707 3.49333 34 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 35 0.14179 3.38107 2.80245 3.28281 35 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 36 0.14179 3.38107 2.80245 3.28281 36 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 37 2.94809 3.58857 0.11707 3.49333 37 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 38 2.94809 3.58857 0.11707 3.49333 38 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 39 0.14179 3.38107 2.80245 3.28281 39 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 40 3.08942 2.59566 3.13755 0.17855 40 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 41 3.43404 0.13010 3.48346 2.82967 41 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 42 0.14179 3.38107 2.80245 3.28281 42 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 43 3.08942 2.59566 3.13755 0.17855 43 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 44 3.08942 2.59566 3.13755 0.17855 44 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 45 0.14179 3.38107 2.80245 3.28281 45 - - 1.38629 1.38629 1.38629 1.38629 0.01860 3.99364 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 1_SSU_Rhizaria_1_SSU_end_nine_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 7 02:47:20 2012 NSEQ 16 EFFN 3.269531 CKSUM 4070040162 STATS LOCAL MSV -8.0187 0.71931 STATS LOCAL VITERBI -7.6599 0.71931 STATS LOCAL FORWARD -4.0885 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.26783 1.62578 1.24505 1.45297 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 0.00000 * 1 0.14418 3.36310 2.79076 3.26314 1 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 2 2.93551 3.57031 0.11909 3.47317 2 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 3 3.07131 2.58413 3.12013 0.18149 3 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 4 3.41331 0.13259 3.46361 2.81457 4 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 5 2.93551 3.57031 0.11909 3.47317 5 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 6 3.07131 2.58413 3.12013 0.18149 6 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 7 0.14418 3.36310 2.79076 3.26314 7 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 8 0.14418 3.36310 2.79076 3.26314 8 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 9 3.41331 0.13259 3.46361 2.81457 9 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 10 0.14418 3.36310 2.79076 3.26314 10 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 11 0.14418 3.36310 2.79076 3.26314 11 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 12 2.93551 3.57031 0.11909 3.47317 12 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 13 2.93551 3.57031 0.11909 3.47317 13 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 14 3.07131 2.58413 3.12013 0.18149 14 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 15 3.07131 2.58413 3.12013 0.18149 15 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 16 3.07131 2.58413 3.12013 0.18149 16 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 17 3.41331 0.13259 3.46361 2.81457 17 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 18 3.41331 0.13259 3.46361 2.81457 18 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 19 2.93551 3.57031 0.11909 3.47317 19 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 20 3.07131 2.58413 3.12013 0.18149 20 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 21 0.14418 3.36310 2.79076 3.26314 21 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 22 2.93551 3.57031 0.11909 3.47317 22 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 23 2.93551 3.57031 0.11909 3.47317 23 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 24 3.07131 2.58413 3.12013 0.18149 24 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 25 2.93551 3.57031 0.11909 3.47317 25 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 26 0.14418 3.36310 2.79076 3.26314 26 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 27 0.14418 3.36310 2.79076 3.26314 27 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 28 3.41331 0.13259 3.46361 2.81457 28 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 29 3.41331 0.13259 3.46361 2.81457 29 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 30 2.32277 2.42204 2.75037 0.28854 30 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 31 2.93551 3.57031 0.11909 3.47317 31 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 32 3.41331 0.13259 3.46361 2.81457 32 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 33 2.93551 3.57031 0.11909 3.47317 33 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 34 2.93551 3.57031 0.11909 3.47317 34 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 35 0.14418 3.36310 2.79076 3.26314 35 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 36 0.14418 3.36310 2.79076 3.26314 36 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 37 2.93551 3.57031 0.11909 3.47317 37 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 38 2.93551 3.57031 0.11909 3.47317 38 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 39 0.14418 3.36310 2.79076 3.26314 39 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 40 3.07131 2.58413 3.12013 0.18149 40 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 41 3.41331 0.13259 3.46361 2.81457 41 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 42 0.14418 3.36310 2.79076 3.26314 42 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 43 3.07131 2.58413 3.12013 0.18149 43 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 44 3.07131 2.58413 3.12013 0.18149 44 - - 1.38629 1.38629 1.38629 1.38629 0.03725 4.00178 4.00178 1.46634 0.26236 1.09861 0.40547 45 0.14418 3.36310 2.79076 3.26314 45 - - 1.38629 1.38629 1.38629 1.38629 0.01880 3.98333 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 1_SSU_Rhizaria_1_SSU_end_one_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 7 02:45:40 2012 NSEQ 29 EFFN 3.366577 CKSUM 2032687351 STATS LOCAL MSV -8.0108 0.71931 STATS LOCAL VITERBI -7.6631 0.71931 STATS LOCAL FORWARD -4.1093 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.27825 1.61970 1.24244 1.44886 1.38629 1.38629 1.38629 1.38629 0.03659 4.01937 4.01937 1.46634 0.26236 0.00000 * 1 0.14007 3.39421 2.81098 3.29720 1 - - 1.38629 1.38629 1.38629 1.38629 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547 2 2.95723 3.60189 0.11562 3.50803 2 - - 1.38629 1.38629 1.38629 1.38629 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547 3 3.10271 2.60411 3.15033 0.17642 3 - - 1.38629 1.38629 1.38629 1.38629 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547 4 3.44918 0.12831 3.49795 2.84068 4 - - 1.38629 1.38629 1.38629 1.38629 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547 5 2.95723 3.60189 0.11562 3.50803 5 - - 1.38629 1.38629 1.38629 1.38629 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547 6 3.10271 2.60411 3.15033 0.17642 6 - - 1.38629 1.38629 1.38629 1.38629 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547 7 0.14007 3.39421 2.81098 3.29720 7 - - 1.38629 1.38629 1.38629 1.38629 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547 8 0.19533 2.82319 2.68717 2.99676 8 - - 1.38629 1.38629 1.38629 1.38629 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547 9 3.44918 0.12831 3.49795 2.84068 9 - - 1.38629 1.38629 1.38629 1.38629 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547 10 0.14007 3.39421 2.81098 3.29720 10 - - 1.38629 1.38629 1.38629 1.38629 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547 11 0.14007 3.39421 2.81098 3.29720 11 - - 1.38629 1.38629 1.38629 1.38629 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547 12 2.95723 3.60189 0.11562 3.50803 12 - - 1.38629 1.38629 1.38629 1.38629 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547 13 2.95723 3.60189 0.11562 3.50803 13 - - 1.38629 1.38629 1.38629 1.38629 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547 14 3.10271 2.60411 3.15033 0.17642 14 - - 1.38629 1.38629 1.38629 1.38629 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547 15 3.10271 2.60411 3.15033 0.17642 15 - - 1.38629 1.38629 1.38629 1.38629 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547 16 3.10271 2.60411 3.15033 0.17642 16 - - 1.38629 1.38629 1.38629 1.38629 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547 17 3.44918 0.12831 3.49795 2.84068 17 - - 1.38629 1.38629 1.38629 1.38629 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547 18 3.44918 0.12831 3.49795 2.84068 18 - - 1.38629 1.38629 1.38629 1.38629 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547 19 2.95723 3.60189 0.11562 3.50803 19 - - 1.38629 1.38629 1.38629 1.38629 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547 20 3.10271 2.60411 3.15033 0.17642 20 - - 1.38629 1.38629 1.38629 1.38629 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547 21 0.28448 2.54998 2.51260 2.42523 21 - - 1.38629 1.38629 1.38629 1.38629 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547 22 2.95723 3.60189 0.11562 3.50803 22 - - 1.38629 1.38629 1.38629 1.38629 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547 23 2.95723 3.60189 0.11562 3.50803 23 - - 1.38629 1.38629 1.38629 1.38629 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547 24 3.10271 2.60411 3.15033 0.17642 24 - - 1.38629 1.38629 1.38629 1.38629 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547 25 2.95723 3.60189 0.11562 3.50803 25 - - 1.38629 1.38629 1.38629 1.38629 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547 26 0.14007 3.39421 2.81098 3.29720 26 - - 1.38629 1.38629 1.38629 1.38629 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547 27 0.14007 3.39421 2.81098 3.29720 27 - - 1.38629 1.38629 1.38629 1.38629 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547 28 3.44918 0.12831 3.49795 2.84068 28 - - 1.38629 1.38629 1.38629 1.38629 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547 29 3.44918 0.12831 3.49795 2.84068 29 - - 1.38629 1.38629 1.38629 1.38629 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547 30 2.20930 2.40656 2.70539 0.31026 30 - - 1.38629 1.38629 1.38629 1.38629 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547 31 2.95723 3.60189 0.11562 3.50803 31 - - 1.38629 1.38629 1.38629 1.38629 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547 32 3.44918 0.12831 3.49795 2.84068 32 - - 1.38629 1.38629 1.38629 1.38629 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547 33 2.95723 3.60189 0.11562 3.50803 33 - - 1.38629 1.38629 1.38629 1.38629 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547 34 2.95723 3.60189 0.11562 3.50803 34 - - 1.38629 1.38629 1.38629 1.38629 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547 35 0.14007 3.39421 2.81098 3.29720 35 - - 1.38629 1.38629 1.38629 1.38629 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547 36 0.14007 3.39421 2.81098 3.29720 36 - - 1.38629 1.38629 1.38629 1.38629 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547 37 2.95723 3.60189 0.11562 3.50803 37 - - 1.38629 1.38629 1.38629 1.38629 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547 38 2.95723 3.60189 0.11562 3.50803 38 - - 1.38629 1.38629 1.38629 1.38629 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547 39 0.14007 3.39421 2.81098 3.29720 39 - - 1.38629 1.38629 1.38629 1.38629 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547 40 3.10271 2.60411 3.15033 0.17642 40 - - 1.38629 1.38629 1.38629 1.38629 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547 41 3.44918 0.12831 3.49795 2.84068 41 - - 1.38629 1.38629 1.38629 1.38629 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547 42 0.14007 3.39421 2.81098 3.29720 42 - - 1.38629 1.38629 1.38629 1.38629 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547 43 3.10271 2.60411 3.15033 0.17642 43 - - 1.38629 1.38629 1.38629 1.38629 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547 44 3.10271 2.60411 3.15033 0.17642 44 - - 1.38629 1.38629 1.38629 1.38629 0.03659 4.01937 4.01937 1.46634 0.26236 1.09861 0.40547 45 0.14007 3.39421 2.81098 3.29720 45 - - 1.38629 1.38629 1.38629 1.38629 0.01846 4.00124 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 1_SSU_Rhizaria_1_SSU_end_seven_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 7 02:46:56 2012 NSEQ 79 EFFN 3.273987 CKSUM 3260105086 STATS LOCAL MSV -7.8870 0.71932 STATS LOCAL VITERBI -7.7661 0.71932 STATS LOCAL FORWARD -3.9848 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.27113 1.54768 1.24856 1.51492 1.38629 1.38629 1.38629 1.38629 0.03722 4.00259 4.00259 1.46634 0.26236 0.00000 * 1 0.14399 3.36455 2.79170 3.26473 1 - - 1.38629 1.38629 1.38629 1.38629 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547 2 2.93653 3.57178 0.11892 3.47480 2 - - 1.38629 1.38629 1.38629 1.38629 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547 3 3.07277 2.58506 3.12153 0.18125 3 - - 1.38629 1.38629 1.38629 1.38629 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547 4 3.41499 0.13239 3.46521 2.81579 4 - - 1.38629 1.38629 1.38629 1.38629 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547 5 2.70587 3.46056 0.14274 3.35827 5 - - 1.38629 1.38629 1.38629 1.38629 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547 6 3.07277 2.58506 3.12153 0.18125 6 - - 1.38629 1.38629 1.38629 1.38629 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547 7 0.14399 3.36455 2.79170 3.26473 7 - - 1.38629 1.38629 1.38629 1.38629 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547 8 0.14399 3.36455 2.79170 3.26473 8 - - 1.38629 1.38629 1.38629 1.38629 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547 9 3.41499 0.13239 3.46521 2.81579 9 - - 1.38629 1.38629 1.38629 1.38629 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547 10 0.14399 3.36455 2.79170 3.26473 10 - - 1.38629 1.38629 1.38629 1.38629 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547 11 0.14399 3.36455 2.79170 3.26473 11 - - 1.38629 1.38629 1.38629 1.38629 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547 12 2.81580 3.33051 0.15813 2.98316 12 - - 1.38629 1.38629 1.38629 1.38629 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547 13 2.93653 3.57178 0.11892 3.47480 13 - - 1.38629 1.38629 1.38629 1.38629 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547 14 3.41499 0.13239 3.46521 2.81579 14 - - 1.38629 1.38629 1.38629 1.38629 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547 15 0.14399 3.36455 2.79170 3.26473 15 - - 1.38629 1.38629 1.38629 1.38629 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547 16 3.07277 2.58506 3.12153 0.18125 16 - - 1.38629 1.38629 1.38629 1.38629 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547 17 3.41499 0.13239 3.46521 2.81579 17 - - 1.38629 1.38629 1.38629 1.38629 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547 18 2.93653 3.57178 0.11892 3.47480 18 - - 1.38629 1.38629 1.38629 1.38629 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547 19 2.93653 3.57178 0.11892 3.47480 19 - - 1.38629 1.38629 1.38629 1.38629 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547 20 3.07277 2.58506 3.12153 0.18125 20 - - 1.38629 1.38629 1.38629 1.38629 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547 21 0.14399 3.36455 2.79170 3.26473 21 - - 1.38629 1.38629 1.38629 1.38629 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547 22 2.93653 3.57178 0.11892 3.47480 22 - - 1.38629 1.38629 1.38629 1.38629 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547 23 2.93653 3.57178 0.11892 3.47480 23 - - 1.38629 1.38629 1.38629 1.38629 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547 24 3.07277 2.58506 3.12153 0.18125 24 - - 1.38629 1.38629 1.38629 1.38629 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547 25 2.93653 3.57178 0.11892 3.47480 25 - - 1.38629 1.38629 1.38629 1.38629 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547 26 0.14399 3.36455 2.79170 3.26473 26 - - 1.38629 1.38629 1.38629 1.38629 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547 27 0.14399 3.36455 2.79170 3.26473 27 - - 1.38629 1.38629 1.38629 1.38629 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547 28 3.41499 0.13239 3.46521 2.81579 28 - - 1.38629 1.38629 1.38629 1.38629 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547 29 3.41499 0.13239 3.46521 2.81579 29 - - 1.38629 1.38629 1.38629 1.38629 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547 30 3.07277 2.58506 3.12153 0.18125 30 - - 1.38629 1.38629 1.38629 1.38629 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547 31 2.93653 3.57178 0.11892 3.47480 31 - - 1.38629 1.38629 1.38629 1.38629 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547 32 3.23383 0.16151 3.12410 2.72178 32 - - 1.38629 1.38629 1.38629 1.38629 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547 33 3.41499 0.13239 3.46521 2.81579 33 - - 1.38629 1.38629 1.38629 1.38629 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547 34 2.93653 3.57178 0.11892 3.47480 34 - - 1.38629 1.38629 1.38629 1.38629 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547 35 0.14399 3.36455 2.79170 3.26473 35 - - 1.38629 1.38629 1.38629 1.38629 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547 36 3.07277 2.58506 3.12153 0.18125 36 - - 1.38629 1.38629 1.38629 1.38629 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547 37 2.93653 3.57178 0.11892 3.47480 37 - - 1.38629 1.38629 1.38629 1.38629 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547 38 2.93653 3.57178 0.11892 3.47480 38 - - 1.38629 1.38629 1.38629 1.38629 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547 39 0.16135 3.29923 2.64224 3.19680 39 - - 1.38629 1.38629 1.38629 1.38629 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547 40 3.07277 2.58506 3.12153 0.18125 40 - - 1.38629 1.38629 1.38629 1.38629 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547 41 3.41499 0.13239 3.46521 2.81579 41 - - 1.38629 1.38629 1.38629 1.38629 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547 42 0.14399 3.36455 2.79170 3.26473 42 - - 1.38629 1.38629 1.38629 1.38629 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547 43 3.07277 2.58506 3.12153 0.18125 43 - - 1.38629 1.38629 1.38629 1.38629 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547 44 2.92813 2.52850 2.81557 0.21461 44 - - 1.38629 1.38629 1.38629 1.38629 0.03722 4.00259 4.00259 1.46634 0.26236 1.09861 0.40547 45 0.14399 3.36455 2.79170 3.26473 45 - - 1.38629 1.38629 1.38629 1.38629 0.01878 3.98416 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 1_SSU_Rhizaria_1_SSU_end_three_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 7 02:46:01 2012 NSEQ 9 EFFN 3.256348 CKSUM 428889299 STATS LOCAL MSV -8.0515 0.71931 STATS LOCAL VITERBI -7.6933 0.71931 STATS LOCAL FORWARD -4.1243 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.33223 1.49217 1.18880 1.57678 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 0.00000 * 1 0.14476 3.35879 2.78795 3.25843 1 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 2 2.93249 3.56592 0.11958 3.46834 2 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 3 3.06699 2.58138 3.11596 0.18220 3 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 4 3.40835 0.13320 3.45885 2.81094 4 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 5 2.93249 3.56592 0.11958 3.46834 5 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 6 3.06699 2.58138 3.11596 0.18220 6 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 7 0.14476 3.35879 2.78795 3.25843 7 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 8 0.14476 3.35879 2.78795 3.25843 8 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 9 3.40835 0.13320 3.45885 2.81094 9 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 10 0.14476 3.35879 2.78795 3.25843 10 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 11 0.14476 3.35879 2.78795 3.25843 11 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 12 2.93249 3.56592 0.11958 3.46834 12 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 13 2.93249 3.56592 0.11958 3.46834 13 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 14 3.06699 2.58138 3.11596 0.18220 14 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 15 3.06699 2.58138 3.11596 0.18220 15 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 16 3.06699 2.58138 3.11596 0.18220 16 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 17 3.40835 0.13320 3.45885 2.81094 17 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 18 3.40835 0.13320 3.45885 2.81094 18 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 19 2.93249 3.56592 0.11958 3.46834 19 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 20 3.06699 2.58138 3.11596 0.18220 20 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 21 0.14476 3.35879 2.78795 3.25843 21 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 22 2.93249 3.56592 0.11958 3.46834 22 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 23 2.93249 3.56592 0.11958 3.46834 23 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 24 3.06699 2.58138 3.11596 0.18220 24 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 25 2.93249 3.56592 0.11958 3.46834 25 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 26 0.14476 3.35879 2.78795 3.25843 26 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 27 0.14476 3.35879 2.78795 3.25843 27 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 28 3.40835 0.13320 3.45885 2.81094 28 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 29 3.40835 0.13320 3.45885 2.81094 29 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 30 3.06699 2.58138 3.11596 0.18220 30 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 31 2.93249 3.56592 0.11958 3.46834 31 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 32 3.40835 0.13320 3.45885 2.81094 32 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 33 2.93249 3.56592 0.11958 3.46834 33 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 34 2.93249 3.56592 0.11958 3.46834 34 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 35 0.14476 3.35879 2.78795 3.25843 35 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 36 0.14476 3.35879 2.78795 3.25843 36 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 37 2.93249 3.56592 0.11958 3.46834 37 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 38 2.93249 3.56592 0.11958 3.46834 38 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 39 0.14476 3.35879 2.78795 3.25843 39 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 40 3.06699 2.58138 3.11596 0.18220 40 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 41 3.40835 0.13320 3.45885 2.81094 41 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 42 0.14476 3.35879 2.78795 3.25843 42 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 43 3.40835 0.13320 3.45885 2.81094 43 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 44 2.67630 0.40722 2.74549 1.60214 44 - - 1.38629 1.38629 1.38629 1.38629 0.03734 3.99936 3.99936 1.46634 0.26236 1.09861 0.40547 45 2.93249 3.56592 0.11958 3.46834 45 - - 1.38629 1.38629 1.38629 1.38629 0.01885 3.98087 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 1_SSU_Rhizaria_1_SSU_end_two_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 7 02:45:51 2012 NSEQ 7 EFFN 3.250488 CKSUM 1479234683 STATS LOCAL MSV -7.8550 0.71933 STATS LOCAL VITERBI -7.6574 0.71933 STATS LOCAL FORWARD -3.9885 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.27354 1.45969 1.38387 1.43866 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 0.00000 * 1 3.40613 0.13347 3.45673 2.80932 1 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 2 0.14502 3.35687 2.78670 3.25633 2 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 3 3.06506 2.58015 3.11411 0.18252 3 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 4 2.93114 3.56396 0.11980 3.46618 4 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 5 3.40613 0.13347 3.45673 2.80932 5 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 6 0.14502 3.35687 2.78670 3.25633 6 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 7 3.40613 0.13347 3.45673 2.80932 7 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 8 0.14502 3.35687 2.78670 3.25633 8 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 9 3.06506 2.58015 3.11411 0.18252 9 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 10 0.14502 3.35687 2.78670 3.25633 10 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 11 3.06506 2.58015 3.11411 0.18252 11 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 12 0.14502 3.35687 2.78670 3.25633 12 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 13 3.40613 0.13347 3.45673 2.80932 13 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 14 2.93114 3.56396 0.11980 3.46618 14 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 15 3.06506 2.58015 3.11411 0.18252 15 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 16 3.06506 2.58015 3.11411 0.18252 16 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 17 3.40613 0.13347 3.45673 2.80932 17 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 18 3.40613 0.13347 3.45673 2.80932 18 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 19 2.93114 3.56396 0.11980 3.46618 19 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 20 3.06506 2.58015 3.11411 0.18252 20 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 21 0.14502 3.35687 2.78670 3.25633 21 - - 1.38629 1.38629 1.38629 1.38629 0.12968 3.99829 2.27038 1.46634 0.26236 1.09861 0.40547 22 2.81175 3.39405 0.14077 3.27968 22 - - 1.38629 1.38629 1.38629 1.38629 0.04093 3.90954 3.90954 1.46634 0.26236 0.30403 1.33879 23 2.93114 3.56396 0.11980 3.46618 23 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 24 3.06506 2.58015 3.11411 0.18252 24 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 25 2.93114 3.56396 0.11980 3.46618 25 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 26 0.14502 3.35687 2.78670 3.25633 26 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 27 0.14502 3.35687 2.78670 3.25633 27 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 28 3.40613 0.13347 3.45673 2.80932 28 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 29 3.40613 0.13347 3.45673 2.80932 29 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 30 3.06506 2.58015 3.11411 0.18252 30 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 31 2.93114 3.56396 0.11980 3.46618 31 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 32 3.40613 0.13347 3.45673 2.80932 32 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 33 2.93114 3.56396 0.11980 3.46618 33 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 34 2.93114 3.56396 0.11980 3.46618 34 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 35 0.14502 3.35687 2.78670 3.25633 35 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 36 0.14502 3.35687 2.78670 3.25633 36 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 37 2.93114 3.56396 0.11980 3.46618 37 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 38 2.93114 3.56396 0.11980 3.46618 38 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 39 0.14502 3.35687 2.78670 3.25633 39 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 40 3.06506 2.58015 3.11411 0.18252 40 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 41 3.40613 0.13347 3.45673 2.80932 41 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 42 0.14502 3.35687 2.78670 3.25633 42 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 43 3.06506 2.58015 3.11411 0.18252 43 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 44 3.06506 2.58015 3.11411 0.18252 44 - - 1.38629 1.38629 1.38629 1.38629 0.03738 3.99829 3.99829 1.46634 0.26236 1.09861 0.40547 45 0.14502 3.35687 2.78670 3.25633 45 - - 1.38629 1.38629 1.38629 1.38629 0.01887 3.97977 * 1.46634 0.26236 0.00000 * //