--- a/ITSx.xml	Fri Jun 05 11:27:39 2015 -0400
+++ b/ITSx.xml	Fri Jun 05 12:05:37 2015 -0400
@@ -5,7 +5,7 @@
   </description>
 
   <command interpreter="perl">
-      ITSx -i $input --detailed_results T -N $domain_num --cpu=\${NSLOTS:1} $preserve $reset
+      ITSx -i $input --detailed_results T -N $domain_num --cpu=\${GALAXY_SLOTS:-1} $preserve $reset
 
   </command>
   <requirements>
@@ -18,7 +18,7 @@
     <!--  <param name="cpu" type="integer" value="1" label="cpu"/> -->
 	<param name="complement" type="boolean" checked="true" truevalue="--complement T" falsevalue="--complement F" label="Check both DNA strands against the database"/>
 	<param name="heuristics" type="boolean" checked="false" truevalue="--heuristics T" falsevalue="--heuristics F" label="Use HMMER's heuristic filtering"/>
-	<param name="reset" type="boolean" checked="false" truevalue="--reset T" falsevalue="--reset F" label="Re-creates the HMM-database before ITSx is run"/>
+	<param name="reset" type="boolean" checked="true" truevalue="--reset T" falsevalue="--reset F" label="Re-creates the HMM-database before ITSx is run"/>
 	<param name="preserve" type="boolean" checked="false" truevalue="--preserve T" falsevalue="--preserve F" label=" Preserve sequence headers instead of printing out ITSx headers"/>
   </inputs>