Mercurial > repos > okorol > itsx
view ITSx_db/HMMs/C.hmm @ 9:3610c6312b85 draft default tip
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| author | okorol |
|---|---|
| date | Fri, 05 Jun 2015 12:05:37 -0400 |
| parents | f82c70f54bd7 |
| children |
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HMMER3/b [3.0 | March 2010] NAME 3_End_Bacillariophyta_58S_end_eight_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 11:42:32 2012 NSEQ 5 EFFN 3.325195 CKSUM 993487011 STATS LOCAL MSV -8.1073 0.71931 STATS LOCAL VITERBI -7.7843 0.71931 STATS LOCAL FORWARD -3.8720 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.47720 1.44778 1.45140 1.19603 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 0.00000 * 1 2.94809 3.58857 0.11707 3.49333 1 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 2 3.43404 0.13010 3.48346 2.82967 2 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 3 2.94809 3.58857 0.11707 3.49333 3 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 4 3.43404 0.13010 3.48346 2.82967 4 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 5 3.08942 2.59566 3.13755 0.17855 5 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 6 0.14179 3.38107 2.80245 3.28281 6 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 7 3.43404 0.13010 3.48346 2.82967 7 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 8 3.08942 2.59566 3.13755 0.17855 8 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 9 2.94809 3.58857 0.11707 3.49333 9 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 10 0.14179 3.38107 2.80245 3.28281 10 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 11 2.94809 3.58857 0.11707 3.49333 11 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 12 3.08942 2.59566 3.13755 0.17855 12 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 13 0.14179 3.38107 2.80245 3.28281 13 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 14 0.14179 3.38107 2.80245 3.28281 14 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 15 3.08942 2.59566 3.13755 0.17855 15 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 16 3.43404 0.13010 3.48346 2.82967 16 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 17 3.08942 2.59566 3.13755 0.17855 17 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 18 3.43404 0.13010 3.48346 2.82967 18 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 19 0.14179 3.38107 2.80245 3.28281 19 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 20 2.94809 3.58857 0.11707 3.49333 20 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 21 3.08942 2.59566 3.13755 0.17855 21 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 22 0.14179 3.38107 2.80245 3.28281 22 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 23 2.94809 3.58857 0.11707 3.49333 23 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 24 3.43404 0.13010 3.48346 2.82967 24 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 25 0.14179 3.38107 2.80245 3.28281 25 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 26 3.08942 2.59566 3.13755 0.17855 26 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 27 2.94809 3.58857 0.11707 3.49333 27 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 28 3.43404 0.13010 3.48346 2.82967 28 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 29 3.08942 2.59566 3.13755 0.17855 29 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 30 3.08942 2.59566 3.13755 0.17855 30 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 31 0.14179 3.38107 2.80245 3.28281 31 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 32 3.08942 2.59566 3.13755 0.17855 32 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 33 3.43404 0.13010 3.48346 2.82967 33 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 34 3.08942 2.59566 3.13755 0.17855 34 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 35 2.94809 3.58857 0.11707 3.49333 35 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 36 0.14179 3.38107 2.80245 3.28281 36 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 37 2.94809 3.58857 0.11707 3.49333 37 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 38 3.08942 2.59566 3.13755 0.17855 38 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 39 2.94809 3.58857 0.11707 3.49333 39 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 40 3.08942 2.59566 3.13755 0.17855 40 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 41 3.43404 0.13010 3.48346 2.82967 41 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 42 3.08942 2.59566 3.13755 0.17855 42 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 43 3.43404 0.13010 3.48346 2.82967 43 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 44 3.08942 2.59566 3.13755 0.17855 44 - - 1.38629 1.38629 1.38629 1.38629 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 45 0.14179 3.38107 2.80245 3.28281 45 - - 1.38629 1.38629 1.38629 1.38629 0.01860 3.99364 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Bacillariophyta_58S_end_eleven_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 11:42:57 2012 NSEQ 2 EFFN 2.000000 CKSUM 1905173856 STATS LOCAL MSV -7.3409 0.72899 STATS LOCAL VITERBI -8.2416 0.72899 STATS LOCAL FORWARD -3.1425 0.72899 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.58317 1.38125 1.35645 1.25234 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.81865 0.23582 2.88868 2.35662 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.53331 3.02441 0.20344 2.88069 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.57915 2.25909 2.64442 0.28946 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.57915 2.25909 2.64442 0.28946 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.57915 2.25909 2.64442 0.28946 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.57915 2.25909 2.64442 0.28946 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.23862 2.84929 2.43386 2.70756 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 1.89532 1.96405 1.06955 1.00436 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.81865 0.23582 2.88868 2.35662 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.81865 0.23582 2.88868 2.35662 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.23862 2.84929 2.43386 2.70756 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.23862 2.84929 2.43386 2.70756 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.57915 2.25909 2.64442 0.28946 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 0.23862 2.84929 2.43386 2.70756 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.81865 0.23582 2.88868 2.35662 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53331 3.02441 0.20344 2.88069 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.81865 0.23582 2.88868 2.35662 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.81865 0.23582 2.88868 2.35662 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.53331 3.02441 0.20344 2.88069 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Bacillariophyta_58S_end_five_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 11:42:02 2012 NSEQ 2 EFFN 2.000000 CKSUM 890636672 STATS LOCAL MSV -7.3435 0.72851 STATS LOCAL VITERBI -8.2240 0.72851 STATS LOCAL FORWARD -3.2698 0.72851 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.70415 1.39193 1.19561 1.32067 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.57915 2.25909 2.64442 0.28946 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.53331 3.02441 0.20344 2.88069 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.57915 2.25909 2.64442 0.28946 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.81865 0.23582 2.88868 2.35662 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.23862 2.84929 2.43386 2.70756 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.57915 2.25909 2.64442 0.28946 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.81865 0.23582 2.88868 2.35662 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.57915 2.25909 2.64442 0.28946 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.81865 0.23582 2.88868 2.35662 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.53331 3.02441 0.20344 2.88069 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.92825 2.28391 0.95698 2.13014 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.23862 2.84929 2.43386 2.70756 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.57915 2.25909 2.64442 0.28946 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.81865 0.23582 2.88868 2.35662 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53331 3.02441 0.20344 2.88069 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.23862 2.84929 2.43386 2.70756 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.53331 3.02441 0.20344 2.88069 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.53331 3.02441 0.20344 2.88069 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Bacillariophyta_58S_end_four_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 11:41:55 2012 NSEQ 10 EFFN 3.911133 CKSUM 2203677874 STATS LOCAL MSV -6.7587 0.71932 STATS LOCAL VITERBI -7.5461 0.71932 STATS LOCAL FORWARD -4.0750 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.79364 1.27971 1.26811 1.29402 1.38629 1.38629 1.38629 1.38629 0.03327 4.11270 4.11270 1.46634 0.26236 0.00000 * 1 3.62901 0.10909 3.66977 2.96962 1 - - 1.38629 1.38629 1.38629 1.38629 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547 2 3.06354 3.75846 0.10007 3.68147 2 - - 1.38629 1.38629 1.38629 1.38629 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547 3 3.62901 0.10909 3.66977 2.96962 3 - - 1.38629 1.38629 1.38629 1.38629 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547 4 3.26490 2.70698 3.30619 0.15268 4 - - 1.38629 1.38629 1.38629 1.38629 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547 5 2.30468 2.26386 1.44279 0.57983 5 - - 1.38629 1.38629 1.38629 1.38629 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547 6 3.62901 0.10909 3.66977 2.96962 6 - - 1.38629 1.38629 1.38629 1.38629 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547 7 3.62901 0.10909 3.66977 2.96962 7 - - 1.38629 1.38629 1.38629 1.38629 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547 8 0.43462 2.80486 1.50107 2.67242 8 - - 1.38629 1.38629 1.38629 1.38629 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547 9 3.06354 3.75846 0.10007 3.68147 9 - - 1.38629 1.38629 1.38629 1.38629 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547 10 3.06354 3.75846 0.10007 3.68147 10 - - 1.38629 1.38629 1.38629 1.38629 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547 11 0.12122 3.55145 2.91224 3.46977 11 - - 1.38629 1.38629 1.38629 1.38629 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547 12 0.57930 2.38745 2.30805 1.39276 12 - - 1.38629 1.38629 1.38629 1.38629 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547 13 3.26490 2.70698 3.30619 0.15268 13 - - 1.38629 1.38629 1.38629 1.38629 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547 14 3.26490 2.70698 3.30619 0.15268 14 - - 1.38629 1.38629 1.38629 1.38629 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547 15 3.26490 2.70698 3.30619 0.15268 15 - - 1.38629 1.38629 1.38629 1.38629 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547 16 3.62901 0.10909 3.66977 2.96962 16 - - 1.38629 1.38629 1.38629 1.38629 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547 17 3.62901 0.10909 3.66977 2.96962 17 - - 1.38629 1.38629 1.38629 1.38629 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547 18 3.26490 2.70698 3.30619 0.15268 18 - - 1.38629 1.38629 1.38629 1.38629 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547 19 3.06354 3.75846 0.10007 3.68147 19 - - 1.38629 1.38629 1.38629 1.38629 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547 20 3.06354 3.75846 0.10007 3.68147 20 - - 1.38629 1.38629 1.38629 1.38629 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547 21 2.21486 2.22095 1.21311 0.72350 21 - - 1.38629 1.38629 1.38629 1.38629 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547 22 0.12122 3.55145 2.91224 3.46977 22 - - 1.38629 1.38629 1.38629 1.38629 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547 23 3.06354 3.75846 0.10007 3.68147 23 - - 1.38629 1.38629 1.38629 1.38629 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547 24 3.62901 0.10909 3.66977 2.96962 24 - - 1.38629 1.38629 1.38629 1.38629 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547 25 0.12122 3.55145 2.91224 3.46977 25 - - 1.38629 1.38629 1.38629 1.38629 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547 26 3.26490 2.70698 3.30619 0.15268 26 - - 1.38629 1.38629 1.38629 1.38629 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547 27 3.06354 3.75846 0.10007 3.68147 27 - - 1.38629 1.38629 1.38629 1.38629 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547 28 3.62901 0.10909 3.66977 2.96962 28 - - 1.38629 1.38629 1.38629 1.38629 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547 29 3.26490 2.70698 3.30619 0.15268 29 - - 1.38629 1.38629 1.38629 1.38629 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547 30 3.26490 2.70698 3.30619 0.15268 30 - - 1.38629 1.38629 1.38629 1.38629 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547 31 3.06354 3.75846 0.10007 3.68147 31 - - 1.38629 1.38629 1.38629 1.38629 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547 32 3.26490 2.70698 3.30619 0.15268 32 - - 1.38629 1.38629 1.38629 1.38629 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547 33 3.62901 0.10909 3.66977 2.96962 33 - - 1.38629 1.38629 1.38629 1.38629 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547 34 3.26490 2.70698 3.30619 0.15268 34 - - 1.38629 1.38629 1.38629 1.38629 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547 35 3.06354 3.75846 0.10007 3.68147 35 - - 1.38629 1.38629 1.38629 1.38629 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547 36 0.12122 3.55145 2.91224 3.46977 36 - - 1.38629 1.38629 1.38629 1.38629 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547 37 3.06354 3.75846 0.10007 3.68147 37 - - 1.38629 1.38629 1.38629 1.38629 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547 38 3.26490 2.70698 3.30619 0.15268 38 - - 1.38629 1.38629 1.38629 1.38629 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547 39 3.06354 3.75846 0.10007 3.68147 39 - - 1.38629 1.38629 1.38629 1.38629 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547 40 2.56277 1.19555 2.63128 0.60078 40 - - 1.38629 1.38629 1.38629 1.38629 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547 41 3.62901 0.10909 3.66977 2.96962 41 - - 1.38629 1.38629 1.38629 1.38629 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547 42 3.62901 0.10909 3.66977 2.96962 42 - - 1.38629 1.38629 1.38629 1.38629 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547 43 3.06354 3.75846 0.10007 3.68147 43 - - 1.38629 1.38629 1.38629 1.38629 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547 44 3.62901 0.10909 3.66977 2.96962 44 - - 1.38629 1.38629 1.38629 1.38629 0.03327 4.11270 4.11270 1.46634 0.26236 1.09861 0.40547 45 0.12122 3.55145 2.91224 3.46977 45 - - 1.38629 1.38629 1.38629 1.38629 0.01678 4.09620 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Bacillariophyta_58S_end_nine_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 11:42:40 2012 NSEQ 4 EFFN 3.261719 CKSUM 2263622984 STATS LOCAL MSV -8.0863 0.71933 STATS LOCAL VITERBI -7.4913 0.71933 STATS LOCAL FORWARD -4.0857 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.55533 1.31636 1.38475 1.30791 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 0.00000 * 1 3.41037 0.13295 3.46079 2.81242 1 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 2 2.93372 3.56771 0.11938 3.47031 2 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 3 3.41037 0.13295 3.46079 2.81242 3 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 4 3.06875 2.58250 3.11766 0.18191 4 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 5 3.06875 2.58250 3.11766 0.18191 5 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 6 3.06875 2.58250 3.11766 0.18191 6 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 7 3.06875 2.58250 3.11766 0.18191 7 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 8 2.93372 3.56771 0.11938 3.47031 8 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 9 2.93372 3.56771 0.11938 3.47031 9 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 10 2.93372 3.56771 0.11938 3.47031 10 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 11 3.06875 2.58250 3.11766 0.18191 11 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 12 0.14453 3.36055 2.78910 3.26035 12 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 13 0.14453 3.36055 2.78910 3.26035 13 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 14 3.06875 2.58250 3.11766 0.18191 14 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 15 2.93372 3.56771 0.11938 3.47031 15 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 16 3.41037 0.13295 3.46079 2.81242 16 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 17 3.41037 0.13295 3.46079 2.81242 17 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 18 3.41037 0.13295 3.46079 2.81242 18 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 19 0.14453 3.36055 2.78910 3.26035 19 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 20 0.14453 3.36055 2.78910 3.26035 20 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 21 2.93372 3.56771 0.11938 3.47031 21 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 22 0.14453 3.36055 2.78910 3.26035 22 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 23 2.93372 3.56771 0.11938 3.47031 23 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 24 3.41037 0.13295 3.46079 2.81242 24 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 25 0.14453 3.36055 2.78910 3.26035 25 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 26 3.06875 2.58250 3.11766 0.18191 26 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 27 2.93372 3.56771 0.11938 3.47031 27 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 28 3.41037 0.13295 3.46079 2.81242 28 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 29 3.06875 2.58250 3.11766 0.18191 29 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 30 3.41037 0.13295 3.46079 2.81242 30 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 31 0.14453 3.36055 2.78910 3.26035 31 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 32 3.06875 2.58250 3.11766 0.18191 32 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 33 3.41037 0.13295 3.46079 2.81242 33 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 34 3.06875 2.58250 3.11766 0.18191 34 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 35 2.93372 3.56771 0.11938 3.47031 35 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 36 0.14453 3.36055 2.78910 3.26035 36 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 37 2.93372 3.56771 0.11938 3.47031 37 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 38 3.06875 2.58250 3.11766 0.18191 38 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 39 2.93372 3.56771 0.11938 3.47031 39 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 40 3.06875 2.58250 3.11766 0.18191 40 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 41 3.06875 2.58250 3.11766 0.18191 41 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 42 3.41037 0.13295 3.46079 2.81242 42 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 43 3.41037 0.13295 3.46079 2.81242 43 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 44 3.41037 0.13295 3.46079 2.81242 44 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 45 0.14453 3.36055 2.78910 3.26035 45 - - 1.38629 1.38629 1.38629 1.38629 0.01883 3.98187 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Bacillariophyta_58S_end_one_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 11:41:30 2012 NSEQ 59 EFFN 3.647888 CKSUM 3784598376 STATS LOCAL MSV -7.5123 0.71931 STATS LOCAL VITERBI -7.6643 0.71931 STATS LOCAL FORWARD -3.7443 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 2.05601 1.44140 1.19427 1.10107 1.38629 1.38629 1.38629 1.38629 0.03480 4.06867 4.06867 1.46634 0.26236 0.00000 * 1 3.41829 0.14399 3.46727 2.65739 1 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547 2 3.01518 3.68691 0.10686 3.60210 2 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547 3 3.54642 0.11747 3.59094 2.91079 3 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547 4 3.18936 2.65909 3.23362 0.16325 4 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547 5 3.18936 2.65909 3.23362 0.16325 5 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547 6 3.18936 2.65909 3.23362 0.16325 6 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547 7 3.54642 0.11747 3.59094 2.91079 7 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547 8 2.77197 3.57920 0.12898 3.48770 8 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547 9 3.01518 3.68691 0.10686 3.60210 9 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547 10 3.01518 3.68691 0.10686 3.60210 10 - - 1.38629 1.38629 1.38629 1.38629 0.11547 4.06867 2.38648 1.46634 0.26236 1.09861 0.40547 11 0.14684 3.34355 2.77801 3.24176 11 - - 1.38629 1.38629 1.38629 1.38629 0.03767 3.99086 3.99086 1.46634 0.26236 0.31622 1.30526 12 3.18936 2.65909 3.23362 0.16325 12 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547 13 1.98689 2.10855 2.53472 0.41222 13 - - 1.38629 1.38629 1.38629 1.38629 0.04625 4.06867 3.57210 1.46634 0.26236 1.09861 0.40547 14 3.17011 2.64688 3.21512 0.16608 14 - - 1.38629 1.38629 1.38629 1.38629 0.03519 4.05761 4.05761 1.46634 0.26236 0.79626 0.59968 15 3.18936 2.65909 3.23362 0.16325 15 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547 16 3.54642 0.11747 3.59094 2.91079 16 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547 17 3.54642 0.11747 3.59094 2.91079 17 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547 18 3.22867 0.19096 3.28418 2.33560 18 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547 19 3.01518 3.68691 0.10686 3.60210 19 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547 20 2.46891 3.41562 0.16720 3.31221 20 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547 21 2.58996 2.39964 2.06152 0.34677 21 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547 22 0.12953 3.47895 2.86567 3.39012 22 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547 23 3.01518 3.68691 0.10686 3.60210 23 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547 24 3.54642 0.11747 3.59094 2.91079 24 - - 1.38629 1.38629 1.38629 1.38629 0.04625 4.06867 3.57210 1.46634 0.26236 1.09861 0.40547 25 0.13177 3.46027 2.85365 3.36962 25 - - 1.38629 1.38629 1.38629 1.38629 0.03519 4.05761 4.05761 1.46634 0.26236 0.79626 0.59968 26 3.18936 2.65909 3.23362 0.16325 26 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547 27 2.50330 3.43570 0.16214 3.33373 27 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547 28 3.54642 0.11747 3.59094 2.91079 28 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547 29 3.18936 2.65909 3.23362 0.16325 29 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547 30 3.18936 2.65909 3.23362 0.16325 30 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547 31 3.01518 3.68691 0.10686 3.60210 31 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547 32 3.18936 2.65909 3.23362 0.16325 32 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547 33 3.35919 0.15748 3.41028 2.55223 33 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547 34 3.18936 2.65909 3.23362 0.16325 34 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547 35 3.01518 3.68691 0.10686 3.60210 35 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547 36 0.12953 3.47895 2.86567 3.39012 36 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547 37 3.01518 3.68691 0.10686 3.60210 37 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547 38 3.18936 2.65909 3.23362 0.16325 38 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547 39 3.01518 3.68691 0.10686 3.60210 39 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547 40 3.18936 2.65909 3.23362 0.16325 40 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547 41 3.54642 0.11747 3.59094 2.91079 41 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547 42 3.18936 2.65909 3.23362 0.16325 42 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547 43 3.01518 3.68691 0.10686 3.60210 43 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547 44 3.05129 2.32303 3.10110 0.21106 44 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06867 4.06867 1.46634 0.26236 1.09861 0.40547 45 3.01518 3.68691 0.10686 3.60210 45 - - 1.38629 1.38629 1.38629 1.38629 0.01755 4.05142 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Bacillariophyta_58S_end_seven_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 11:42:22 2012 NSEQ 7 EFFN 3.380371 CKSUM 2693198585 STATS LOCAL MSV -7.4165 0.71932 STATS LOCAL VITERBI -7.6098 0.71932 STATS LOCAL FORWARD -4.0200 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.57825 1.37670 1.37176 1.24621 1.38629 1.38629 1.38629 1.38629 0.03650 4.02184 4.02184 1.46634 0.26236 0.00000 * 1 3.45418 0.12772 3.50274 2.84431 1 - - 1.38629 1.38629 1.38629 1.38629 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547 2 2.96025 3.60628 0.11515 3.51289 2 - - 1.38629 1.38629 1.38629 1.38629 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547 3 3.45418 0.12772 3.50274 2.84431 3 - - 1.38629 1.38629 1.38629 1.38629 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547 4 3.10711 2.60690 3.15456 0.17572 4 - - 1.38629 1.38629 1.38629 1.38629 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547 5 3.10711 2.60690 3.15456 0.17572 5 - - 1.38629 1.38629 1.38629 1.38629 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547 6 3.10711 2.60690 3.15456 0.17572 6 - - 1.38629 1.38629 1.38629 1.38629 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547 7 3.10711 2.60690 3.15456 0.17572 7 - - 1.38629 1.38629 1.38629 1.38629 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547 8 2.96025 3.60628 0.11515 3.51289 8 - - 1.38629 1.38629 1.38629 1.38629 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547 9 2.96025 3.60628 0.11515 3.51289 9 - - 1.38629 1.38629 1.38629 1.38629 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547 10 2.96025 3.60628 0.11515 3.51289 10 - - 1.38629 1.38629 1.38629 1.38629 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547 11 3.10711 2.60690 3.15456 0.17572 11 - - 1.38629 1.38629 1.38629 1.38629 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547 12 0.13950 3.39856 2.81379 3.30196 12 - - 1.38629 1.38629 1.38629 1.38629 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547 13 0.13950 3.39856 2.81379 3.30196 13 - - 1.38629 1.38629 1.38629 1.38629 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547 14 3.10711 2.60690 3.15456 0.17572 14 - - 1.38629 1.38629 1.38629 1.38629 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547 15 2.96025 3.60628 0.11515 3.51289 15 - - 1.38629 1.38629 1.38629 1.38629 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547 16 3.45418 0.12772 3.50274 2.84431 16 - - 1.38629 1.38629 1.38629 1.38629 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547 17 3.45418 0.12772 3.50274 2.84431 17 - - 1.38629 1.38629 1.38629 1.38629 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547 18 3.45418 0.12772 3.50274 2.84431 18 - - 1.38629 1.38629 1.38629 1.38629 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547 19 0.13950 3.39856 2.81379 3.30196 19 - - 1.38629 1.38629 1.38629 1.38629 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547 20 0.13950 3.39856 2.81379 3.30196 20 - - 1.38629 1.38629 1.38629 1.38629 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547 21 2.96025 3.60628 0.11515 3.51289 21 - - 1.38629 1.38629 1.38629 1.38629 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547 22 0.13950 3.39856 2.81379 3.30196 22 - - 1.38629 1.38629 1.38629 1.38629 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547 23 2.96025 3.60628 0.11515 3.51289 23 - - 1.38629 1.38629 1.38629 1.38629 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547 24 3.45418 0.12772 3.50274 2.84431 24 - - 1.38629 1.38629 1.38629 1.38629 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547 25 0.13950 3.39856 2.81379 3.30196 25 - - 1.38629 1.38629 1.38629 1.38629 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547 26 3.10711 2.60690 3.15456 0.17572 26 - - 1.38629 1.38629 1.38629 1.38629 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547 27 2.96025 3.60628 0.11515 3.51289 27 - - 1.38629 1.38629 1.38629 1.38629 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547 28 3.45418 0.12772 3.50274 2.84431 28 - - 1.38629 1.38629 1.38629 1.38629 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547 29 3.10711 2.60690 3.15456 0.17572 29 - - 1.38629 1.38629 1.38629 1.38629 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547 30 3.10711 2.60690 3.15456 0.17572 30 - - 1.38629 1.38629 1.38629 1.38629 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547 31 0.13950 3.39856 2.81379 3.30196 31 - - 1.38629 1.38629 1.38629 1.38629 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547 32 3.10711 2.60690 3.15456 0.17572 32 - - 1.38629 1.38629 1.38629 1.38629 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547 33 3.45418 0.12772 3.50274 2.84431 33 - - 1.38629 1.38629 1.38629 1.38629 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547 34 3.10711 2.60690 3.15456 0.17572 34 - - 1.38629 1.38629 1.38629 1.38629 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547 35 2.96025 3.60628 0.11515 3.51289 35 - - 1.38629 1.38629 1.38629 1.38629 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547 36 0.13950 3.39856 2.81379 3.30196 36 - - 1.38629 1.38629 1.38629 1.38629 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547 37 2.96025 3.60628 0.11515 3.51289 37 - - 1.38629 1.38629 1.38629 1.38629 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547 38 3.10711 2.60690 3.15456 0.17572 38 - - 1.38629 1.38629 1.38629 1.38629 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547 39 2.96025 3.60628 0.11515 3.51289 39 - - 1.38629 1.38629 1.38629 1.38629 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547 40 3.10711 2.60690 3.15456 0.17572 40 - - 1.38629 1.38629 1.38629 1.38629 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547 41 3.45418 0.12772 3.50274 2.84431 41 - - 1.38629 1.38629 1.38629 1.38629 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547 42 3.45418 0.12772 3.50274 2.84431 42 - - 1.38629 1.38629 1.38629 1.38629 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547 43 3.45418 0.12772 3.50274 2.84431 43 - - 1.38629 1.38629 1.38629 1.38629 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547 44 3.10711 2.60690 3.15456 0.17572 44 - - 1.38629 1.38629 1.38629 1.38629 0.03650 4.02184 4.02184 1.46634 0.26236 1.09861 0.40547 45 0.44242 2.71377 1.53569 2.57794 45 - - 1.38629 1.38629 1.38629 1.38629 0.01842 4.00376 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Bacillariophyta_58S_end_six_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 11:42:15 2012 NSEQ 23 EFFN 4.910522 CKSUM 989768431 STATS LOCAL MSV -6.8527 0.71932 STATS LOCAL VITERBI -7.7326 0.71932 STATS LOCAL FORWARD -4.0652 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.90902 1.42695 1.19558 1.17375 1.38629 1.38629 1.38629 1.38629 0.02853 4.26416 4.26416 1.46634 0.26236 0.00000 * 1 3.88157 0.08732 3.91039 3.14745 1 - - 1.38629 1.38629 1.38629 1.38629 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547 2 3.20993 3.97473 0.08224 3.92175 2 - - 1.38629 1.38629 1.38629 1.38629 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547 3 3.88157 0.08732 3.91039 3.14745 3 - - 1.38629 1.38629 1.38629 1.38629 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547 4 3.50993 2.86404 3.54157 0.12319 4 - - 1.38629 1.38629 1.38629 1.38629 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547 5 3.19216 2.03607 3.24025 0.23671 5 - - 1.38629 1.38629 1.38629 1.38629 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547 6 3.19429 0.20047 2.53561 2.78965 6 - - 1.38629 1.38629 1.38629 1.38629 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547 7 3.88157 0.08732 3.91039 3.14745 7 - - 1.38629 1.38629 1.38629 1.38629 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547 8 1.06582 2.19973 1.26269 1.34006 8 - - 1.38629 1.38629 1.38629 1.38629 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547 9 3.20993 3.97473 0.08224 3.92175 9 - - 1.38629 1.38629 1.38629 1.38629 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547 10 3.20993 3.97473 0.08224 3.92175 10 - - 1.38629 1.38629 1.38629 1.38629 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547 11 0.09879 3.77800 3.05894 3.71889 11 - - 1.38629 1.38629 1.38629 1.38629 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547 12 3.50993 2.86404 3.54157 0.12319 12 - - 1.38629 1.38629 1.38629 1.38629 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547 13 3.50993 2.86404 3.54157 0.12319 13 - - 1.38629 1.38629 1.38629 1.38629 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547 14 3.50993 2.86404 3.54157 0.12319 14 - - 1.38629 1.38629 1.38629 1.38629 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547 15 3.50993 2.86404 3.54157 0.12319 15 - - 1.38629 1.38629 1.38629 1.38629 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547 16 3.88157 0.08732 3.91039 3.14745 16 - - 1.38629 1.38629 1.38629 1.38629 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547 17 3.88157 0.08732 3.91039 3.14745 17 - - 1.38629 1.38629 1.38629 1.38629 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547 18 2.70043 0.67997 2.76952 1.01198 18 - - 1.38629 1.38629 1.38629 1.38629 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547 19 3.20993 3.97473 0.08224 3.92175 19 - - 1.38629 1.38629 1.38629 1.38629 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547 20 3.20993 3.97473 0.08224 3.92175 20 - - 1.38629 1.38629 1.38629 1.38629 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547 21 2.59948 1.89052 0.34474 2.71373 21 - - 1.38629 1.38629 1.38629 1.38629 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547 22 0.09879 3.77800 3.05894 3.71889 22 - - 1.38629 1.38629 1.38629 1.38629 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547 23 3.20993 3.97473 0.08224 3.92175 23 - - 1.38629 1.38629 1.38629 1.38629 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547 24 3.88157 0.08732 3.91039 3.14745 24 - - 1.38629 1.38629 1.38629 1.38629 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547 25 0.09879 3.77800 3.05894 3.71889 25 - - 1.38629 1.38629 1.38629 1.38629 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547 26 3.50993 2.86404 3.54157 0.12319 26 - - 1.38629 1.38629 1.38629 1.38629 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547 27 3.20993 3.97473 0.08224 3.92175 27 - - 1.38629 1.38629 1.38629 1.38629 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547 28 3.88157 0.08732 3.91039 3.14745 28 - - 1.38629 1.38629 1.38629 1.38629 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547 29 2.24774 2.63840 2.99460 0.25770 29 - - 1.38629 1.38629 1.38629 1.38629 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547 30 3.37000 2.44529 3.40918 0.16742 30 - - 1.38629 1.38629 1.38629 1.38629 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547 31 3.20993 3.97473 0.08224 3.92175 31 - - 1.38629 1.38629 1.38629 1.38629 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547 32 3.50993 2.86404 3.54157 0.12319 32 - - 1.38629 1.38629 1.38629 1.38629 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547 33 2.70934 0.65669 2.77834 1.04210 33 - - 1.38629 1.38629 1.38629 1.38629 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547 34 3.50993 2.86404 3.54157 0.12319 34 - - 1.38629 1.38629 1.38629 1.38629 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547 35 3.20993 3.97473 0.08224 3.92175 35 - - 1.38629 1.38629 1.38629 1.38629 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547 36 0.09879 3.77800 3.05894 3.71889 36 - - 1.38629 1.38629 1.38629 1.38629 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547 37 3.20993 3.97473 0.08224 3.92175 37 - - 1.38629 1.38629 1.38629 1.38629 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547 38 3.50993 2.86404 3.54157 0.12319 38 - - 1.38629 1.38629 1.38629 1.38629 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547 39 3.20993 3.97473 0.08224 3.92175 39 - - 1.38629 1.38629 1.38629 1.38629 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547 40 3.50993 2.86404 3.54157 0.12319 40 - - 1.38629 1.38629 1.38629 1.38629 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547 41 2.94893 0.38481 3.01361 1.52366 41 - - 1.38629 1.38629 1.38629 1.38629 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547 42 0.39990 2.71590 2.54745 1.68638 42 - - 1.38629 1.38629 1.38629 1.38629 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547 43 3.20993 3.97473 0.08224 3.92175 43 - - 1.38629 1.38629 1.38629 1.38629 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547 44 2.83838 1.37814 2.90080 0.45499 44 - - 1.38629 1.38629 1.38629 1.38629 0.02853 4.26416 4.26416 1.46634 0.26236 1.09861 0.40547 45 1.25375 2.88872 0.51876 2.75413 45 - - 1.38629 1.38629 1.38629 1.38629 0.01437 4.25000 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Bacillariophyta_58S_end_ten_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 11:42:48 2012 NSEQ 12 EFFN 3.571289 CKSUM 3994526417 STATS LOCAL MSV -7.4590 0.71932 STATS LOCAL VITERBI -7.8349 0.71932 STATS LOCAL FORWARD -3.7654 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.69655 1.33242 1.35217 1.22360 1.38629 1.38629 1.38629 1.38629 0.03527 4.05548 4.05548 1.46634 0.26236 0.00000 * 1 3.52090 0.12021 3.56655 2.89248 1 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547 2 3.00009 3.66468 0.10908 3.57747 2 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547 3 3.52090 0.12021 3.56655 2.89248 3 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547 4 3.16639 2.64453 3.21155 0.16663 4 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547 5 3.16639 2.64453 3.21155 0.16663 5 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547 6 3.52090 0.12021 3.56655 2.89248 6 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547 7 3.16639 2.64453 3.21155 0.16663 7 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547 8 3.00009 3.66468 0.10908 3.57747 8 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547 9 3.00009 3.66468 0.10908 3.57747 9 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547 10 3.00009 3.66468 0.10908 3.57747 10 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547 11 3.16639 2.64453 3.21155 0.16663 11 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547 12 3.16639 2.64453 3.21155 0.16663 12 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547 13 0.13221 3.45665 2.85132 3.36565 13 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547 14 3.16639 2.64453 3.21155 0.16663 14 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547 15 3.16639 2.64453 3.21155 0.16663 15 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547 16 3.52090 0.12021 3.56655 2.89248 16 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547 17 3.52090 0.12021 3.56655 2.89248 17 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547 18 3.52090 0.12021 3.56655 2.89248 18 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547 19 0.13221 3.45665 2.85132 3.36565 19 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547 20 3.00009 3.66468 0.10908 3.57747 20 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547 21 3.00009 3.66468 0.10908 3.57747 21 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547 22 0.13221 3.45665 2.85132 3.36565 22 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547 23 3.00009 3.66468 0.10908 3.57747 23 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547 24 3.52090 0.12021 3.56655 2.89248 24 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547 25 0.13221 3.45665 2.85132 3.36565 25 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547 26 3.16639 2.64453 3.21155 0.16663 26 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547 27 0.13221 3.45665 2.85132 3.36565 27 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547 28 3.52090 0.12021 3.56655 2.89248 28 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547 29 3.16639 2.64453 3.21155 0.16663 29 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547 30 3.16639 2.64453 3.21155 0.16663 30 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547 31 0.13221 3.45665 2.85132 3.36565 31 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547 32 3.16639 2.64453 3.21155 0.16663 32 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547 33 3.52090 0.12021 3.56655 2.89248 33 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547 34 3.16639 2.64453 3.21155 0.16663 34 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547 35 3.00009 3.66468 0.10908 3.57747 35 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547 36 0.20546 3.20130 2.30575 3.09377 36 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547 37 3.00009 3.66468 0.10908 3.57747 37 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547 38 3.16639 2.64453 3.21155 0.16663 38 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547 39 3.00009 3.66468 0.10908 3.57747 39 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547 40 3.16639 2.64453 3.21155 0.16663 40 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547 41 3.52090 0.12021 3.56655 2.89248 41 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547 42 3.52090 0.12021 3.56655 2.89248 42 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547 43 2.54971 0.57954 2.62092 1.24131 43 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547 44 3.00009 3.66468 0.10908 3.57747 44 - - 1.38629 1.38629 1.38629 1.38629 0.03527 4.05548 4.05548 1.46634 0.26236 1.09861 0.40547 45 0.86869 2.55645 0.88355 2.41231 45 - - 1.38629 1.38629 1.38629 1.38629 0.01779 4.03800 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Bacillariophyta_58S_end_three_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 11:41:46 2012 NSEQ 5 EFFN 3.647461 CKSUM 282462996 STATS LOCAL MSV -7.4641 0.71933 STATS LOCAL VITERBI -7.7880 0.71933 STATS LOCAL FORWARD -4.3354 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.78844 1.55757 1.15735 1.17826 1.38629 1.38629 1.38629 1.38629 0.03480 4.06859 4.06859 1.46634 0.26236 0.00000 * 1 3.54628 0.11749 3.59080 2.91069 1 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547 2 3.01510 3.68679 0.10688 3.60196 2 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547 3 3.54628 0.11749 3.59080 2.91069 3 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547 4 3.18923 2.65900 3.23350 0.16327 4 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547 5 3.01510 3.68679 0.10688 3.60196 5 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547 6 3.18923 2.65900 3.23350 0.16327 6 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547 7 3.18923 2.65900 3.23350 0.16327 7 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547 8 3.18923 2.65900 3.23350 0.16327 8 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547 9 3.01510 3.68679 0.10688 3.60196 9 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547 10 3.01510 3.68679 0.10688 3.60196 10 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547 11 3.01510 3.68679 0.10688 3.60196 11 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547 12 0.12954 3.47883 2.86559 3.38998 12 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547 13 0.12954 3.47883 2.86559 3.38998 13 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547 14 3.18923 2.65900 3.23350 0.16327 14 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547 15 3.18923 2.65900 3.23350 0.16327 15 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547 16 3.54628 0.11749 3.59080 2.91069 16 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547 17 3.54628 0.11749 3.59080 2.91069 17 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547 18 3.18923 2.65900 3.23350 0.16327 18 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547 19 3.01510 3.68679 0.10688 3.60196 19 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547 20 3.01510 3.68679 0.10688 3.60196 20 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547 21 3.54628 0.11749 3.59080 2.91069 21 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547 22 0.12954 3.47883 2.86559 3.38998 22 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547 23 3.01510 3.68679 0.10688 3.60196 23 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547 24 3.54628 0.11749 3.59080 2.91069 24 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547 25 0.12954 3.47883 2.86559 3.38998 25 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547 26 3.18923 2.65900 3.23350 0.16327 26 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547 27 3.01510 3.68679 0.10688 3.60196 27 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547 28 3.18923 2.65900 3.23350 0.16327 28 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547 29 3.18923 2.65900 3.23350 0.16327 29 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547 30 3.18923 2.65900 3.23350 0.16327 30 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547 31 3.01510 3.68679 0.10688 3.60196 31 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547 32 3.18923 2.65900 3.23350 0.16327 32 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547 33 3.54628 0.11749 3.59080 2.91069 33 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547 34 3.18923 2.65900 3.23350 0.16327 34 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547 35 3.01510 3.68679 0.10688 3.60196 35 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547 36 0.12954 3.47883 2.86559 3.38998 36 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547 37 3.01510 3.68679 0.10688 3.60196 37 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547 38 2.50462 1.17407 2.57418 0.62929 38 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547 39 3.01510 3.68679 0.10688 3.60196 39 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547 40 3.18923 2.65900 3.23350 0.16327 40 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547 41 2.50462 1.17407 2.57418 0.62929 41 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547 42 0.12954 3.47883 2.86559 3.38998 42 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547 43 3.01510 3.68679 0.10688 3.60196 43 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547 44 3.54628 0.11749 3.59080 2.91069 44 - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06859 4.06859 1.46634 0.26236 1.09861 0.40547 45 1.12332 2.61913 0.65802 2.47627 45 - - 1.38629 1.38629 1.38629 1.38629 0.01755 4.05134 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Bacillariophyta_58S_end_twelve_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 11:43:07 2012 NSEQ 4 EFFN 3.191406 CKSUM 292128274 STATS LOCAL MSV -8.0824 0.71931 STATS LOCAL VITERBI -7.8114 0.71931 STATS LOCAL FORWARD -4.1333 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.81883 1.38860 1.09146 1.37581 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 0.00000 * 1 3.38354 0.13628 3.43507 2.79277 1 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 2 2.91732 3.54398 0.12206 3.44415 2 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 3 3.38354 0.13628 3.43507 2.79277 3 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 4 3.04545 2.56765 3.09524 0.18579 4 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 5 3.04545 2.56765 3.09524 0.18579 5 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 6 3.38354 0.13628 3.43507 2.79277 6 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 7 3.38354 0.13628 3.43507 2.79277 7 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 8 2.91732 3.54398 0.12206 3.44415 8 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 9 2.91732 3.54398 0.12206 3.44415 9 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 10 2.91732 3.54398 0.12206 3.44415 10 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 11 0.14770 3.33730 2.77393 3.23493 11 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 12 0.14770 3.33730 2.77393 3.23493 12 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 13 0.14770 3.33730 2.77393 3.23493 13 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 14 3.04545 2.56765 3.09524 0.18579 14 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 15 2.91732 3.54398 0.12206 3.44415 15 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 16 3.38354 0.13628 3.43507 2.79277 16 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 17 3.38354 0.13628 3.43507 2.79277 17 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 18 3.38354 0.13628 3.43507 2.79277 18 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 19 2.91732 3.54398 0.12206 3.44415 19 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 20 2.91732 3.54398 0.12206 3.44415 20 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 21 3.04545 2.56765 3.09524 0.18579 21 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 22 0.14770 3.33730 2.77393 3.23493 22 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 23 2.91732 3.54398 0.12206 3.44415 23 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 24 3.38354 0.13628 3.43507 2.79277 24 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 25 0.14770 3.33730 2.77393 3.23493 25 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 26 3.04545 2.56765 3.09524 0.18579 26 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 27 2.91732 3.54398 0.12206 3.44415 27 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 28 3.38354 0.13628 3.43507 2.79277 28 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 29 3.38354 0.13628 3.43507 2.79277 29 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 30 3.04545 2.56765 3.09524 0.18579 30 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 31 2.91732 3.54398 0.12206 3.44415 31 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 32 2.91732 3.54398 0.12206 3.44415 32 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 33 3.04545 2.56765 3.09524 0.18579 33 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 34 3.04545 2.56765 3.09524 0.18579 34 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 35 2.91732 3.54398 0.12206 3.44415 35 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 36 0.14770 3.33730 2.77393 3.23493 36 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 37 2.91732 3.54398 0.12206 3.44415 37 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 38 3.04545 2.56765 3.09524 0.18579 38 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 39 2.91732 3.54398 0.12206 3.44415 39 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 40 3.04545 2.56765 3.09524 0.18579 40 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 41 3.04545 2.56765 3.09524 0.18579 41 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 42 3.38354 0.13628 3.43507 2.79277 42 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 43 2.91732 3.54398 0.12206 3.44415 43 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 44 3.04545 2.56765 3.09524 0.18579 44 - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 45 2.91732 3.54398 0.12206 3.44415 45 - - 1.38629 1.38629 1.38629 1.38629 0.01908 3.96867 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Bacillariophyta_58S_end_two_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 11:41:39 2012 NSEQ 2 EFFN 2.000000 CKSUM 3128468991 STATS LOCAL MSV -7.4839 0.72820 STATS LOCAL VITERBI -8.3885 0.72820 STATS LOCAL FORWARD -3.5934 0.72820 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.65400 1.65338 1.16290 1.18831 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.57915 2.25909 2.64442 0.28946 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.57915 2.25909 2.64442 0.28946 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.53331 3.02441 0.20344 2.88069 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 0.23862 2.84929 2.43386 2.70756 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.57915 2.25909 2.64442 0.28946 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 0.23862 2.84929 2.43386 2.70756 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.57915 2.25909 2.64442 0.28946 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.53331 3.02441 0.20344 2.88069 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.53331 3.02441 0.20344 2.88069 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.53331 3.02441 0.20344 2.88069 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 0.23862 2.84929 2.43386 2.70756 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.81865 0.23582 2.88868 2.35662 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.23862 2.84929 2.43386 2.70756 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.57915 2.25909 2.64442 0.28946 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.57915 2.25909 2.64442 0.28946 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.23862 2.84929 2.43386 2.70756 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.57915 2.25909 2.64442 0.28946 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.53331 3.02441 0.20344 2.88069 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.57915 2.25909 2.64442 0.28946 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53331 3.02441 0.20344 2.88069 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.57915 2.25909 2.64442 0.28946 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.81865 0.23582 2.88868 2.35662 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.53331 3.02441 0.20344 2.88069 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.53331 3.02441 0.20344 2.88069 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Bacillariophyta_58S_start_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Oct 1 02:11:41 2011 NSEQ 144 EFFN 6.077637 CKSUM 1030745055 STATS LOCAL MSV -6.8970 0.71932 STATS LOCAL VITERBI -7.5686 0.71932 STATS LOCAL FORWARD -4.3787 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.22465 1.36279 1.47544 1.50726 1.38629 1.38629 1.38629 1.38629 0.02446 4.41614 4.41614 1.46634 0.26236 0.00000 * 1 3.99350 0.09233 4.01872 2.96069 1 - - 1.38629 1.38629 1.38629 1.38629 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547 2 0.26673 2.37689 2.76416 2.54783 2 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.41614 3.73066 1.46634 0.26236 1.09861 0.40547 3 0.08397 3.95853 3.18118 3.91647 3 - - 1.38629 1.38629 1.38629 1.38629 0.02476 4.40417 4.40417 1.46634 0.26236 0.69698 0.68932 4 4.08931 0.07282 4.10855 3.29556 4 - - 1.38629 1.38629 1.38629 1.38629 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547 5 3.60874 2.54724 3.63979 0.14115 5 - - 1.38629 1.38629 1.38629 1.38629 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547 6 2.81521 2.90569 3.46061 0.15784 6 - - 1.38629 1.38629 1.38629 1.38629 0.03672 4.41614 3.73066 1.46634 0.26236 1.09861 0.40547 7 3.71512 3.00075 3.73903 0.10301 7 - - 1.38629 1.38629 1.38629 1.38629 0.02476 4.40417 4.40417 1.46634 0.26236 0.69698 0.68932 8 3.49880 0.21228 3.54875 2.02290 8 - - 1.38629 1.38629 1.38629 1.38629 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547 9 0.20606 3.57886 2.05667 3.49231 9 - - 1.38629 1.38629 1.38629 1.38629 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547 10 2.29832 3.79341 0.15934 3.71548 10 - - 1.38629 1.38629 1.38629 1.38629 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547 11 3.78938 0.13609 3.82622 2.49087 11 - - 1.38629 1.38629 1.38629 1.38629 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547 12 0.79345 2.47005 1.14686 1.92755 12 - - 1.38629 1.38629 1.38629 1.38629 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547 13 0.64077 1.89059 1.47582 2.36937 13 - - 1.38629 1.38629 1.38629 1.38629 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547 14 3.00490 1.28502 3.06513 0.46655 14 - - 1.38629 1.38629 1.38629 1.38629 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547 15 3.33504 4.15230 0.07002 4.11774 15 - - 1.38629 1.38629 1.38629 1.38629 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547 16 3.33504 4.15230 0.07002 4.11774 16 - - 1.38629 1.38629 1.38629 1.38629 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547 17 0.08289 3.97284 3.19122 3.93205 17 - - 1.38629 1.38629 1.38629 1.38629 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547 18 3.73173 3.01214 3.75504 0.10152 18 - - 1.38629 1.38629 1.38629 1.38629 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547 19 3.33504 4.15230 0.07002 4.11774 19 - - 1.38629 1.38629 1.38629 1.38629 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547 20 3.73173 3.01214 3.75504 0.10152 20 - - 1.38629 1.38629 1.38629 1.38629 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547 21 4.08931 0.07282 4.10855 3.29556 21 - - 1.38629 1.38629 1.38629 1.38629 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547 22 2.40870 2.82458 3.26662 0.20752 22 - - 1.38629 1.38629 1.38629 1.38629 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547 23 0.50152 2.68344 2.57692 1.38607 23 - - 1.38629 1.38629 1.38629 1.38629 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547 24 2.56134 3.92766 0.12541 3.86462 24 - - 1.38629 1.38629 1.38629 1.38629 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547 25 3.33504 4.15230 0.07002 4.11774 25 - - 1.38629 1.38629 1.38629 1.38629 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547 26 1.84788 1.37699 1.54968 0.97345 26 - - 1.38629 1.38629 1.38629 1.38629 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547 27 3.73173 3.01214 3.75504 0.10152 27 - - 1.38629 1.38629 1.38629 1.38629 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547 28 3.93022 0.09244 3.54057 3.22740 28 - - 1.38629 1.38629 1.38629 1.38629 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547 29 3.23546 0.14449 3.66947 2.66353 29 - - 1.38629 1.38629 1.38629 1.38629 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547 30 3.77053 0.11478 3.15435 3.15272 30 - - 1.38629 1.38629 1.38629 1.38629 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547 31 0.10083 3.91055 2.90290 3.86225 31 - - 1.38629 1.38629 1.38629 1.38629 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547 32 2.95075 0.23869 2.49016 2.56212 32 - - 1.38629 1.38629 1.38629 1.38629 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547 33 0.16976 2.61407 3.00452 3.40117 33 - - 1.38629 1.38629 1.38629 1.38629 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547 34 0.22861 3.21085 2.88206 2.22547 34 - - 1.38629 1.38629 1.38629 1.38629 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547 35 3.90913 0.10987 3.93940 2.74061 35 - - 1.38629 1.38629 1.38629 1.38629 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547 36 2.56134 3.92766 0.12541 3.86462 36 - - 1.38629 1.38629 1.38629 1.38629 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547 37 0.08289 3.97284 3.19122 3.93205 37 - - 1.38629 1.38629 1.38629 1.38629 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547 38 3.73173 3.01214 3.75504 0.10152 38 - - 1.38629 1.38629 1.38629 1.38629 0.02827 4.41614 4.14791 1.46634 0.26236 1.09861 0.40547 39 3.22610 3.89440 0.10656 3.19397 39 - - 1.38629 1.38629 1.38629 1.38629 0.02455 4.41242 4.41242 1.46634 0.26236 0.92801 0.50309 40 0.08289 3.97284 3.19122 3.93205 40 - - 1.38629 1.38629 1.38629 1.38629 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547 41 0.15880 3.55611 2.73128 2.93474 41 - - 1.38629 1.38629 1.38629 1.38629 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547 42 3.30078 4.06617 0.08187 3.70475 42 - - 1.38629 1.38629 1.38629 1.38629 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547 43 0.09762 3.87464 3.15684 3.51704 43 - - 1.38629 1.38629 1.38629 1.38629 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547 44 0.08289 3.97284 3.19122 3.93205 44 - - 1.38629 1.38629 1.38629 1.38629 0.02446 4.41614 4.41614 1.46634 0.26236 1.09861 0.40547 45 3.80347 0.13290 3.83957 2.51762 45 - - 1.38629 1.38629 1.38629 1.38629 0.01230 4.40399 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Bacillariophyta_4_LSU_start_five_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 11:59:52 2012 NSEQ 5 EFFN 3.657227 CKSUM 2111448149 STATS LOCAL MSV -7.6920 0.71932 STATS LOCAL VITERBI -7.6476 0.71932 STATS LOCAL FORWARD -3.8455 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.20593 1.21862 1.62039 1.57443 1.38629 1.38629 1.38629 1.38629 0.03474 4.07026 4.07026 1.46634 0.26236 0.00000 * 1 3.54949 0.11715 3.59387 2.91298 1 - - 1.38629 1.38629 1.38629 1.38629 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547 2 3.54949 0.11715 3.59387 2.91298 2 - - 1.38629 1.38629 1.38629 1.38629 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547 3 3.54949 0.11715 3.59387 2.91298 3 - - 1.38629 1.38629 1.38629 1.38629 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547 4 3.19213 2.66084 3.23628 0.16285 4 - - 1.38629 1.38629 1.38629 1.38629 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547 5 3.01699 3.68957 0.10660 3.60505 5 - - 1.38629 1.38629 1.38629 1.38629 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547 6 0.12921 3.48163 2.86740 3.39306 6 - - 1.38629 1.38629 1.38629 1.38629 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547 7 3.19213 2.66084 3.23628 0.16285 7 - - 1.38629 1.38629 1.38629 1.38629 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547 8 3.54949 0.11715 3.59387 2.91298 8 - - 1.38629 1.38629 1.38629 1.38629 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547 9 3.19213 2.66084 3.23628 0.16285 9 - - 1.38629 1.38629 1.38629 1.38629 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547 10 3.54949 0.11715 3.59387 2.91298 10 - - 1.38629 1.38629 1.38629 1.38629 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547 11 0.12921 3.48163 2.86740 3.39306 11 - - 1.38629 1.38629 1.38629 1.38629 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547 12 3.01699 3.68957 0.10660 3.60505 12 - - 1.38629 1.38629 1.38629 1.38629 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547 13 3.54949 0.11715 3.59387 2.91298 13 - - 1.38629 1.38629 1.38629 1.38629 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547 14 3.19213 2.66084 3.23628 0.16285 14 - - 1.38629 1.38629 1.38629 1.38629 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547 15 3.54949 0.11715 3.59387 2.91298 15 - - 1.38629 1.38629 1.38629 1.38629 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547 16 0.12921 3.48163 2.86740 3.39306 16 - - 1.38629 1.38629 1.38629 1.38629 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547 17 0.12921 3.48163 2.86740 3.39306 17 - - 1.38629 1.38629 1.38629 1.38629 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547 18 0.12921 3.48163 2.86740 3.39306 18 - - 1.38629 1.38629 1.38629 1.38629 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547 19 3.54949 0.11715 3.59387 2.91298 19 - - 1.38629 1.38629 1.38629 1.38629 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547 20 0.12921 3.48163 2.86740 3.39306 20 - - 1.38629 1.38629 1.38629 1.38629 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547 21 0.12921 3.48163 2.86740 3.39306 21 - - 1.38629 1.38629 1.38629 1.38629 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547 22 3.01699 3.68957 0.10660 3.60505 22 - - 1.38629 1.38629 1.38629 1.38629 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547 23 3.01699 3.68957 0.10660 3.60505 23 - - 1.38629 1.38629 1.38629 1.38629 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547 24 2.14931 2.23541 0.80168 1.11501 24 - - 1.38629 1.38629 1.38629 1.38629 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547 25 2.14931 2.23541 0.80168 1.11501 25 - - 1.38629 1.38629 1.38629 1.38629 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547 26 0.12921 3.48163 2.86740 3.39306 26 - - 1.38629 1.38629 1.38629 1.38629 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547 27 3.54949 0.11715 3.59387 2.91298 27 - - 1.38629 1.38629 1.38629 1.38629 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547 28 3.54949 0.11715 3.59387 2.91298 28 - - 1.38629 1.38629 1.38629 1.38629 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547 29 3.54949 0.11715 3.59387 2.91298 29 - - 1.38629 1.38629 1.38629 1.38629 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547 30 3.01699 3.68957 0.10660 3.60505 30 - - 1.38629 1.38629 1.38629 1.38629 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547 31 3.54949 0.11715 3.59387 2.91298 31 - - 1.38629 1.38629 1.38629 1.38629 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547 32 3.19213 2.66084 3.23628 0.16285 32 - - 1.38629 1.38629 1.38629 1.38629 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547 33 3.01699 3.68957 0.10660 3.60505 33 - - 1.38629 1.38629 1.38629 1.38629 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547 34 0.12921 3.48163 2.86740 3.39306 34 - - 1.38629 1.38629 1.38629 1.38629 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547 35 0.12921 3.48163 2.86740 3.39306 35 - - 1.38629 1.38629 1.38629 1.38629 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547 36 2.48946 0.73109 2.56123 1.02596 36 - - 1.38629 1.38629 1.38629 1.38629 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547 37 3.19213 2.66084 3.23628 0.16285 37 - - 1.38629 1.38629 1.38629 1.38629 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547 38 3.19213 2.66084 3.23628 0.16285 38 - - 1.38629 1.38629 1.38629 1.38629 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547 39 0.12921 3.48163 2.86740 3.39306 39 - - 1.38629 1.38629 1.38629 1.38629 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547 40 0.12921 3.48163 2.86740 3.39306 40 - - 1.38629 1.38629 1.38629 1.38629 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547 41 3.01699 3.68957 0.10660 3.60505 41 - - 1.38629 1.38629 1.38629 1.38629 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547 42 3.54949 0.11715 3.59387 2.91298 42 - - 1.38629 1.38629 1.38629 1.38629 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547 43 0.12921 3.48163 2.86740 3.39306 43 - - 1.38629 1.38629 1.38629 1.38629 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547 44 3.19213 2.66084 3.23628 0.16285 44 - - 1.38629 1.38629 1.38629 1.38629 0.03474 4.07026 4.07026 1.46634 0.26236 1.09861 0.40547 45 0.12921 3.48163 2.86740 3.39306 45 - - 1.38629 1.38629 1.38629 1.38629 0.01752 4.05304 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Bacillariophyta_4_LSU_start_four_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 11:59:43 2012 NSEQ 2 EFFN 2.000000 CKSUM 3289991583 STATS LOCAL MSV -7.5573 0.72794 STATS LOCAL VITERBI -8.1212 0.72794 STATS LOCAL FORWARD -3.3703 0.72794 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.23978 1.40458 1.43017 1.48805 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.57915 2.25909 2.64442 0.28946 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.53331 3.02441 0.20344 2.88069 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.57915 2.25909 2.64442 0.28946 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.53331 3.02441 0.20344 2.88069 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.23862 2.84929 2.43386 2.70756 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.57915 2.25909 2.64442 0.28946 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.57915 2.25909 2.64442 0.28946 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.81865 0.23582 2.88868 2.35662 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.53331 3.02441 0.20344 2.88069 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.81865 0.23582 2.88868 2.35662 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.81865 0.23582 2.88868 2.35662 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 0.23862 2.84929 2.43386 2.70756 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.23862 2.84929 2.43386 2.70756 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.53331 3.02441 0.20344 2.88069 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.81865 0.23582 2.88868 2.35662 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.23862 2.84929 2.43386 2.70756 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 0.23862 2.84929 2.43386 2.70756 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.53331 3.02441 0.20344 2.88069 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.53331 3.02441 0.20344 2.88069 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.23862 2.84929 2.43386 2.70756 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.81865 0.23582 2.88868 2.35662 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.53331 3.02441 0.20344 2.88069 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.81865 0.23582 2.88868 2.35662 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.53331 3.02441 0.20344 2.88069 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.23862 2.84929 2.43386 2.70756 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 0.23862 2.84929 2.43386 2.70756 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.57915 2.25909 2.64442 0.28946 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.57915 2.25909 2.64442 0.28946 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.23862 2.84929 2.43386 2.70756 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.53331 3.02441 0.20344 2.88069 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.81865 0.23582 2.88868 2.35662 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.23862 2.84929 2.43386 2.70756 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Bacillariophyta_4_LSU_start_one_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 11:59:19 2012 NSEQ 40 EFFN 3.999023 CKSUM 706348853 STATS LOCAL MSV -7.2263 0.71931 STATS LOCAL VITERBI -7.6120 0.71931 STATS LOCAL FORWARD -3.8186 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.14058 1.36426 1.52942 1.56957 1.38629 1.38629 1.38629 1.38629 0.03280 4.12698 4.12698 1.46634 0.26236 0.00000 * 1 2.44979 2.56427 2.94985 0.24288 1 - - 1.38629 1.38629 1.38629 1.38629 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547 2 2.54426 1.07425 2.61378 0.67992 2 - - 1.38629 1.38629 1.38629 1.38629 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547 3 3.50322 0.13678 3.54889 2.67387 3 - - 1.38629 1.38629 1.38629 1.38629 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547 4 2.20358 2.29709 0.74699 1.15439 4 - - 1.38629 1.38629 1.38629 1.38629 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547 5 3.07859 3.78078 0.09805 3.70627 5 - - 1.38629 1.38629 1.38629 1.38629 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547 6 0.15910 3.34062 2.82940 2.94454 6 - - 1.38629 1.38629 1.38629 1.38629 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547 7 3.28900 2.72228 3.32934 0.14947 7 - - 1.38629 1.38629 1.38629 1.38629 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547 8 3.65491 0.10660 3.69447 2.98796 8 - - 1.38629 1.38629 1.38629 1.38629 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547 9 3.28900 2.72228 3.32934 0.14947 9 - - 1.38629 1.38629 1.38629 1.38629 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547 10 3.65491 0.10660 3.69447 2.98796 10 - - 1.38629 1.38629 1.38629 1.38629 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547 11 0.11873 3.57431 2.92691 3.49490 11 - - 1.38629 1.38629 1.38629 1.38629 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547 12 3.07859 3.78078 0.09805 3.70627 12 - - 1.38629 1.38629 1.38629 1.38629 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547 13 0.30331 2.14137 2.57045 2.69362 13 - - 1.38629 1.38629 1.38629 1.38629 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547 14 3.28900 2.72228 3.32934 0.14947 14 - - 1.38629 1.38629 1.38629 1.38629 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547 15 3.65491 0.10660 3.69447 2.98796 15 - - 1.38629 1.38629 1.38629 1.38629 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547 16 0.11873 3.57431 2.92691 3.49490 16 - - 1.38629 1.38629 1.38629 1.38629 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547 17 0.11873 3.57431 2.92691 3.49490 17 - - 1.38629 1.38629 1.38629 1.38629 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547 18 3.07859 3.78078 0.09805 3.70627 18 - - 1.38629 1.38629 1.38629 1.38629 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547 19 3.43616 0.15164 3.48450 2.55302 19 - - 1.38629 1.38629 1.38629 1.38629 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547 20 0.11873 3.57431 2.92691 3.49490 20 - - 1.38629 1.38629 1.38629 1.38629 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547 21 0.11873 3.57431 2.92691 3.49490 21 - - 1.38629 1.38629 1.38629 1.38629 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547 22 3.07859 3.78078 0.09805 3.70627 22 - - 1.38629 1.38629 1.38629 1.38629 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547 23 0.14321 3.47772 2.67523 3.39148 23 - - 1.38629 1.38629 1.38629 1.38629 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547 24 1.21241 2.20089 0.91483 1.65428 24 - - 1.38629 1.38629 1.38629 1.38629 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547 25 3.07859 3.78078 0.09805 3.70627 25 - - 1.38629 1.38629 1.38629 1.38629 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547 26 0.11873 3.57431 2.92691 3.49490 26 - - 1.38629 1.38629 1.38629 1.38629 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547 27 3.65491 0.10660 3.69447 2.98796 27 - - 1.38629 1.38629 1.38629 1.38629 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547 28 3.65491 0.10660 3.69447 2.98796 28 - - 1.38629 1.38629 1.38629 1.38629 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547 29 3.65491 0.10660 3.69447 2.98796 29 - - 1.38629 1.38629 1.38629 1.38629 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547 30 3.07859 3.78078 0.09805 3.70627 30 - - 1.38629 1.38629 1.38629 1.38629 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547 31 3.65491 0.10660 3.69447 2.98796 31 - - 1.38629 1.38629 1.38629 1.38629 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547 32 3.18188 0.22051 3.23916 2.14400 32 - - 1.38629 1.38629 1.38629 1.38629 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547 33 3.07859 3.78078 0.09805 3.70627 33 - - 1.38629 1.38629 1.38629 1.38629 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547 34 0.11873 3.57431 2.92691 3.49490 34 - - 1.38629 1.38629 1.38629 1.38629 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547 35 0.11873 3.57431 2.92691 3.49490 35 - - 1.38629 1.38629 1.38629 1.38629 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547 36 3.28900 2.72228 3.32934 0.14947 36 - - 1.38629 1.38629 1.38629 1.38629 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547 37 3.28900 2.72228 3.32934 0.14947 37 - - 1.38629 1.38629 1.38629 1.38629 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547 38 3.28900 2.72228 3.32934 0.14947 38 - - 1.38629 1.38629 1.38629 1.38629 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547 39 0.11873 3.57431 2.92691 3.49490 39 - - 1.38629 1.38629 1.38629 1.38629 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547 40 0.11873 3.57431 2.92691 3.49490 40 - - 1.38629 1.38629 1.38629 1.38629 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547 41 3.07859 3.78078 0.09805 3.70627 41 - - 1.38629 1.38629 1.38629 1.38629 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547 42 3.65491 0.10660 3.69447 2.98796 42 - - 1.38629 1.38629 1.38629 1.38629 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547 43 0.11873 3.57431 2.92691 3.49490 43 - - 1.38629 1.38629 1.38629 1.38629 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547 44 3.28900 2.72228 3.32934 0.14947 44 - - 1.38629 1.38629 1.38629 1.38629 0.03280 4.12698 4.12698 1.46634 0.26236 1.09861 0.40547 45 0.11873 3.57431 2.92691 3.49490 45 - - 1.38629 1.38629 1.38629 1.38629 0.01653 4.11071 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Bacillariophyta_4_LSU_start_six_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 12:00:01 2012 NSEQ 2 EFFN 2.000000 CKSUM 274407066 STATS LOCAL MSV -7.5697 0.72844 STATS LOCAL VITERBI -7.9859 0.72844 STATS LOCAL FORWARD -3.2875 0.72844 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.14546 1.45292 1.63473 1.37424 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.81865 0.23582 2.88868 2.35662 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.57915 2.25909 2.64442 0.28946 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.57915 2.25909 2.64442 0.28946 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.53331 3.02441 0.20344 2.88069 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.23862 2.84929 2.43386 2.70756 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.57915 2.25909 2.64442 0.28946 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.57915 2.25909 2.64442 0.28946 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.81865 0.23582 2.88868 2.35662 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.53331 3.02441 0.20344 2.88069 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.81865 0.23582 2.88868 2.35662 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 0.23862 2.84929 2.43386 2.70756 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.57915 2.25909 2.64442 0.28946 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.53331 3.02441 0.20344 2.88069 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.57915 2.25909 2.64442 0.28946 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.23862 2.84929 2.43386 2.70756 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 0.23862 2.84929 2.43386 2.70756 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 0.23862 2.84929 2.43386 2.70756 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.23862 2.84929 2.43386 2.70756 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.81865 0.23582 2.88868 2.35662 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.53331 3.02441 0.20344 2.88069 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.81865 0.23582 2.88868 2.35662 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.53331 3.02441 0.20344 2.88069 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.23862 2.84929 2.43386 2.70756 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 0.23862 2.84929 2.43386 2.70756 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.57915 2.25909 2.64442 0.28946 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.57915 2.25909 2.64442 0.28946 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.23862 2.84929 2.43386 2.70756 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.53331 3.02441 0.20344 2.88069 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.81865 0.23582 2.88868 2.35662 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.23862 2.84929 2.43386 2.70756 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Bacillariophyta_4_LSU_start_three_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 11:59:35 2012 NSEQ 15 EFFN 3.643799 CKSUM 2793155846 STATS LOCAL MSV -7.7992 0.71932 STATS LOCAL VITERBI -7.4552 0.71932 STATS LOCAL FORWARD -3.9887 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.10595 1.60246 1.61822 1.31136 1.38629 1.38629 1.38629 1.38629 0.03482 4.06797 4.06797 1.46634 0.26236 0.00000 * 1 3.18815 2.65832 3.23245 0.16343 1 - - 1.38629 1.38629 1.38629 1.38629 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547 2 0.12967 3.47777 2.86492 3.38883 2 - - 1.38629 1.38629 1.38629 1.38629 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547 3 3.18815 2.65832 3.23245 0.16343 3 - - 1.38629 1.38629 1.38629 1.38629 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547 4 3.01439 3.68574 0.10698 3.60080 4 - - 1.38629 1.38629 1.38629 1.38629 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547 5 1.33274 2.70507 0.52349 2.56483 5 - - 1.38629 1.38629 1.38629 1.38629 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547 6 0.12967 3.47777 2.86492 3.38883 6 - - 1.38629 1.38629 1.38629 1.38629 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547 7 3.18815 2.65832 3.23245 0.16343 7 - - 1.38629 1.38629 1.38629 1.38629 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547 8 3.54508 0.11761 3.58965 2.90982 8 - - 1.38629 1.38629 1.38629 1.38629 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547 9 3.18815 2.65832 3.23245 0.16343 9 - - 1.38629 1.38629 1.38629 1.38629 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547 10 3.54508 0.11761 3.58965 2.90982 10 - - 1.38629 1.38629 1.38629 1.38629 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547 11 0.12967 3.47777 2.86492 3.38883 11 - - 1.38629 1.38629 1.38629 1.38629 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547 12 3.01439 3.68574 0.10698 3.60080 12 - - 1.38629 1.38629 1.38629 1.38629 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547 13 0.12967 3.47777 2.86492 3.38883 13 - - 1.38629 1.38629 1.38629 1.38629 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547 14 3.18815 2.65832 3.23245 0.16343 14 - - 1.38629 1.38629 1.38629 1.38629 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547 15 3.18815 2.65832 3.23245 0.16343 15 - - 1.38629 1.38629 1.38629 1.38629 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547 16 0.51418 2.68429 1.36497 2.54654 16 - - 1.38629 1.38629 1.38629 1.38629 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547 17 0.12967 3.47777 2.86492 3.38883 17 - - 1.38629 1.38629 1.38629 1.38629 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547 18 3.01439 3.68574 0.10698 3.60080 18 - - 1.38629 1.38629 1.38629 1.38629 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547 19 3.18815 2.65832 3.23245 0.16343 19 - - 1.38629 1.38629 1.38629 1.38629 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547 20 0.12967 3.47777 2.86492 3.38883 20 - - 1.38629 1.38629 1.38629 1.38629 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547 21 0.12967 3.47777 2.86492 3.38883 21 - - 1.38629 1.38629 1.38629 1.38629 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547 22 3.01439 3.68574 0.10698 3.60080 22 - - 1.38629 1.38629 1.38629 1.38629 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547 23 0.12967 3.47777 2.86492 3.38883 23 - - 1.38629 1.38629 1.38629 1.38629 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547 24 3.54508 0.11761 3.58965 2.90982 24 - - 1.38629 1.38629 1.38629 1.38629 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547 25 3.18815 2.65832 3.23245 0.16343 25 - - 1.38629 1.38629 1.38629 1.38629 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547 26 0.12967 3.47777 2.86492 3.38883 26 - - 1.38629 1.38629 1.38629 1.38629 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547 27 3.54508 0.11761 3.58965 2.90982 27 - - 1.38629 1.38629 1.38629 1.38629 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547 28 3.54508 0.11761 3.58965 2.90982 28 - - 1.38629 1.38629 1.38629 1.38629 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547 29 3.54508 0.11761 3.58965 2.90982 29 - - 1.38629 1.38629 1.38629 1.38629 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547 30 3.01439 3.68574 0.10698 3.60080 30 - - 1.38629 1.38629 1.38629 1.38629 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547 31 3.54508 0.11761 3.58965 2.90982 31 - - 1.38629 1.38629 1.38629 1.38629 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547 32 2.74213 1.70504 2.80382 0.36640 32 - - 1.38629 1.38629 1.38629 1.38629 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547 33 3.01439 3.68574 0.10698 3.60080 33 - - 1.38629 1.38629 1.38629 1.38629 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547 34 0.12967 3.47777 2.86492 3.38883 34 - - 1.38629 1.38629 1.38629 1.38629 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547 35 0.12967 3.47777 2.86492 3.38883 35 - - 1.38629 1.38629 1.38629 1.38629 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547 36 3.18815 2.65832 3.23245 0.16343 36 - - 1.38629 1.38629 1.38629 1.38629 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547 37 3.18815 2.65832 3.23245 0.16343 37 - - 1.38629 1.38629 1.38629 1.38629 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547 38 3.18815 2.65832 3.23245 0.16343 38 - - 1.38629 1.38629 1.38629 1.38629 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547 39 0.12967 3.47777 2.86492 3.38883 39 - - 1.38629 1.38629 1.38629 1.38629 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547 40 0.12967 3.47777 2.86492 3.38883 40 - - 1.38629 1.38629 1.38629 1.38629 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547 41 3.01439 3.68574 0.10698 3.60080 41 - - 1.38629 1.38629 1.38629 1.38629 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547 42 3.54508 0.11761 3.58965 2.90982 42 - - 1.38629 1.38629 1.38629 1.38629 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547 43 0.12967 3.47777 2.86492 3.38883 43 - - 1.38629 1.38629 1.38629 1.38629 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547 44 3.18815 2.65832 3.23245 0.16343 44 - - 1.38629 1.38629 1.38629 1.38629 0.03482 4.06797 4.06797 1.46634 0.26236 1.09861 0.40547 45 0.12967 3.47777 2.86492 3.38883 45 - - 1.38629 1.38629 1.38629 1.38629 0.01756 4.05071 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Bacillariophyta_4_LSU_start_two_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 11:59:28 2012 NSEQ 2 EFFN 2.000000 CKSUM 53972170 STATS LOCAL MSV -7.5197 0.72823 STATS LOCAL VITERBI -8.1408 0.72823 STATS LOCAL FORWARD -3.1060 0.72823 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.19216 1.39756 1.56314 1.42812 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.57915 2.25909 2.64442 0.28946 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.53331 3.02441 0.20344 2.88069 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.53331 3.02441 0.20344 2.88069 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.23862 2.84929 2.43386 2.70756 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.57915 2.25909 2.64442 0.28946 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.57915 2.25909 2.64442 0.28946 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.81865 0.23582 2.88868 2.35662 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.53331 3.02441 0.20344 2.88069 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.81865 0.23582 2.88868 2.35662 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 0.23862 2.84929 2.43386 2.70756 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.23862 2.84929 2.43386 2.70756 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.53331 3.02441 0.20344 2.88069 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.57915 2.25909 2.64442 0.28946 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.23862 2.84929 2.43386 2.70756 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 0.23862 2.84929 2.43386 2.70756 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.57915 2.25909 2.64442 0.28946 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.57915 2.25909 2.64442 0.28946 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.23862 2.84929 2.43386 2.70756 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.81865 0.23582 2.88868 2.35662 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.53331 3.02441 0.20344 2.88069 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.81865 0.23582 2.88868 2.35662 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.53331 3.02441 0.20344 2.88069 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.23862 2.84929 2.43386 2.70756 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 0.23862 2.84929 2.43386 2.70756 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.57915 2.25909 2.64442 0.28946 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.57915 2.25909 2.64442 0.28946 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.23862 2.84929 2.43386 2.70756 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.53331 3.02441 0.20344 2.88069 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.81865 0.23582 2.88868 2.35662 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.23862 2.84929 2.43386 2.70756 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 1_SSU_Bacillariophyta_1_SSU_end_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Oct 1 01:59:06 2011 NSEQ 44 EFFN 3.225342 CKSUM 3533706599 STATS LOCAL MSV -8.0048 0.71933 STATS LOCAL VITERBI -7.6830 0.71933 STATS LOCAL FORWARD -4.1089 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.27189 1.62644 1.24659 1.44567 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 0.00000 * 1 0.14615 3.34859 2.78130 3.24727 1 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 2 2.92530 3.55551 0.12075 3.45686 2 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 3 3.05675 2.57485 3.10612 0.18390 3 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 4 3.39657 0.13465 3.44756 2.80232 4 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 5 2.92530 3.55551 0.12075 3.45686 5 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 6 3.05675 2.57485 3.10612 0.18390 6 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 7 0.14615 3.34859 2.78130 3.24727 7 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 8 0.14615 3.34859 2.78130 3.24727 8 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 9 3.39657 0.13465 3.44756 2.80232 9 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 10 0.14615 3.34859 2.78130 3.24727 10 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 11 0.14615 3.34859 2.78130 3.24727 11 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 12 2.92530 3.55551 0.12075 3.45686 12 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 13 2.92530 3.55551 0.12075 3.45686 13 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 14 3.05675 2.57485 3.10612 0.18390 14 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 15 3.05675 2.57485 3.10612 0.18390 15 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 16 3.05675 2.57485 3.10612 0.18390 16 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 17 3.39657 0.13465 3.44756 2.80232 17 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 18 3.39657 0.13465 3.44756 2.80232 18 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 19 2.92530 3.55551 0.12075 3.45686 19 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 20 3.05675 2.57485 3.10612 0.18390 20 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 21 0.14615 3.34859 2.78130 3.24727 21 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 22 2.92530 3.55551 0.12075 3.45686 22 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 23 2.92530 3.55551 0.12075 3.45686 23 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 24 3.05675 2.57485 3.10612 0.18390 24 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 25 2.92530 3.55551 0.12075 3.45686 25 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 26 0.14615 3.34859 2.78130 3.24727 26 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 27 0.14615 3.34859 2.78130 3.24727 27 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 28 3.39657 0.13465 3.44756 2.80232 28 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 29 3.39657 0.13465 3.44756 2.80232 29 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 30 3.05675 2.57485 3.10612 0.18390 30 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 31 2.92530 3.55551 0.12075 3.45686 31 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 32 3.39657 0.13465 3.44756 2.80232 32 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 33 2.92530 3.55551 0.12075 3.45686 33 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 34 2.92530 3.55551 0.12075 3.45686 34 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 35 0.14615 3.34859 2.78130 3.24727 35 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 36 0.14615 3.34859 2.78130 3.24727 36 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 37 2.92530 3.55551 0.12075 3.45686 37 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 38 2.92530 3.55551 0.12075 3.45686 38 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 39 0.14615 3.34859 2.78130 3.24727 39 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 40 3.05675 2.57485 3.10612 0.18390 40 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 41 3.39657 0.13465 3.44756 2.80232 41 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 42 0.14615 3.34859 2.78130 3.24727 42 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 43 3.05675 2.57485 3.10612 0.18390 43 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 44 3.05675 2.57485 3.10612 0.18390 44 - - 1.38629 1.38629 1.38629 1.38629 0.03756 3.99367 3.99367 1.46634 0.26236 1.09861 0.40547 45 0.14615 3.34859 2.78130 3.24727 45 - - 1.38629 1.38629 1.38629 1.38629 0.01896 3.97506 * 1.46634 0.26236 0.00000 * //