Mercurial > repos > okorol > itsx
view ITSx_db/HMMs/Q.hmm @ 9:3610c6312b85 draft default tip
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| author | okorol |
|---|---|
| date | Fri, 05 Jun 2015 12:05:37 -0400 |
| parents | f82c70f54bd7 |
| children |
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HMMER3/b [3.0 | March 2010] NAME 3_End_Raphidophyceae_58S_end_one_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Thu Jan 19 22:28:09 2012 NSEQ 29 EFFN 3.345337 CKSUM 2540392139 STATS LOCAL MSV -8.0627 0.71933 STATS LOCAL VITERBI -7.5685 0.71933 STATS LOCAL FORWARD -3.8000 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.72491 1.59887 1.25392 1.09570 1.38629 1.38629 1.38629 1.38629 0.03673 4.01554 4.01554 1.46634 0.26236 0.00000 * 1 3.44143 0.12922 3.49054 2.83505 1 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547 2 0.14094 3.38749 2.80662 3.28984 2 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547 3 3.44143 0.12922 3.49054 2.83505 3 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547 4 3.09591 2.59978 3.14378 0.17750 4 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547 5 3.09591 2.59978 3.14378 0.17750 5 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547 6 3.44143 0.12922 3.49054 2.83505 6 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547 7 3.44143 0.12922 3.49054 2.83505 7 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547 8 2.95256 3.59508 0.11636 3.50051 8 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547 9 2.95256 3.59508 0.11636 3.50051 9 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547 10 2.95256 3.59508 0.11636 3.50051 10 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547 11 0.14094 3.38749 2.80662 3.28984 11 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547 12 3.09591 2.59978 3.14378 0.17750 12 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547 13 0.14094 3.38749 2.80662 3.28984 13 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547 14 3.09591 2.59978 3.14378 0.17750 14 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547 15 3.09591 2.59978 3.14378 0.17750 15 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547 16 3.44143 0.12922 3.49054 2.83505 16 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547 17 3.44143 0.12922 3.49054 2.83505 17 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547 18 3.09591 2.59978 3.14378 0.17750 18 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547 19 2.95256 3.59508 0.11636 3.50051 19 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547 20 2.95256 3.59508 0.11636 3.50051 20 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547 21 2.95256 3.59508 0.11636 3.50051 21 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547 22 0.14094 3.38749 2.80662 3.28984 22 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547 23 2.95256 3.59508 0.11636 3.50051 23 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547 24 3.09591 2.59978 3.14378 0.17750 24 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547 25 0.14094 3.38749 2.80662 3.28984 25 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547 26 3.09591 2.59978 3.14378 0.17750 26 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547 27 2.95256 3.59508 0.11636 3.50051 27 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547 28 3.44143 0.12922 3.49054 2.83505 28 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547 29 3.09591 2.59978 3.14378 0.17750 29 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547 30 3.09591 2.59978 3.14378 0.17750 30 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547 31 2.95256 3.59508 0.11636 3.50051 31 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547 32 3.09591 2.59978 3.14378 0.17750 32 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547 33 3.09591 2.59978 3.14378 0.17750 33 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547 34 0.17548 3.26091 2.52535 3.15686 34 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547 35 2.95256 3.59508 0.11636 3.50051 35 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547 36 0.14094 3.38749 2.80662 3.28984 36 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547 37 2.95256 3.59508 0.11636 3.50051 37 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547 38 3.09591 2.59978 3.14378 0.17750 38 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547 39 2.95256 3.59508 0.11636 3.50051 39 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547 40 3.09591 2.59978 3.14378 0.17750 40 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547 41 3.44143 0.12922 3.49054 2.83505 41 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547 42 3.09591 2.59978 3.14378 0.17750 42 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547 43 2.95256 3.59508 0.11636 3.50051 43 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547 44 3.09591 2.59978 3.14378 0.17750 44 - - 1.38629 1.38629 1.38629 1.38629 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547 45 3.09591 2.59978 3.14378 0.17750 45 - - 1.38629 1.38629 1.38629 1.38629 0.01854 3.99734 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Raphidophyceae_58S_end_three_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Thu Jan 19 22:28:25 2012 NSEQ 22 EFFN 3.348877 CKSUM 1842339946 STATS LOCAL MSV -7.9914 0.71933 STATS LOCAL VITERBI -7.6624 0.71933 STATS LOCAL FORWARD -3.8281 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.72163 1.59833 1.25283 1.09872 1.38629 1.38629 1.38629 1.38629 0.03671 4.01618 4.01618 1.46634 0.26236 0.00000 * 1 2.95334 3.59622 0.11624 3.50177 1 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547 2 3.44273 0.12907 3.49178 2.83600 2 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547 3 0.14080 3.38861 2.80735 3.29107 3 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547 4 3.44273 0.12907 3.49178 2.83600 4 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547 5 3.09705 2.60051 3.14488 0.17732 5 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547 6 3.09705 2.60051 3.14488 0.17732 6 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547 7 3.44273 0.12907 3.49178 2.83600 7 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547 8 3.44273 0.12907 3.49178 2.83600 8 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547 9 2.95334 3.59622 0.11624 3.50177 9 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547 10 2.95334 3.59622 0.11624 3.50177 10 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547 11 2.95334 3.59622 0.11624 3.50177 11 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547 12 2.96194 2.28365 3.01466 0.22652 12 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547 13 0.14080 3.38861 2.80735 3.29107 13 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547 14 3.09705 2.60051 3.14488 0.17732 14 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547 15 3.09705 2.60051 3.14488 0.17732 15 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547 16 3.44273 0.12907 3.49178 2.83600 16 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547 17 3.44273 0.12907 3.49178 2.83600 17 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547 18 3.09705 2.60051 3.14488 0.17732 18 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547 19 2.95334 3.59622 0.11624 3.50177 19 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547 20 2.95334 3.59622 0.11624 3.50177 20 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547 21 2.95334 3.59622 0.11624 3.50177 21 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547 22 0.14080 3.38861 2.80735 3.29107 22 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547 23 2.95334 3.59622 0.11624 3.50177 23 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547 24 3.09705 2.60051 3.14488 0.17732 24 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547 25 0.14080 3.38861 2.80735 3.29107 25 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547 26 3.09705 2.60051 3.14488 0.17732 26 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547 27 2.95334 3.59622 0.11624 3.50177 27 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547 28 3.44273 0.12907 3.49178 2.83600 28 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547 29 3.09705 2.60051 3.14488 0.17732 29 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547 30 3.09705 2.60051 3.14488 0.17732 30 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547 31 3.09705 2.60051 3.14488 0.17732 31 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547 32 0.14080 3.38861 2.80735 3.29107 32 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547 33 3.09705 2.60051 3.14488 0.17732 33 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547 34 0.14080 3.38861 2.80735 3.29107 34 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547 35 2.95334 3.59622 0.11624 3.50177 35 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547 36 0.14080 3.38861 2.80735 3.29107 36 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547 37 2.95334 3.59622 0.11624 3.50177 37 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547 38 3.09705 2.60051 3.14488 0.17732 38 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547 39 2.95334 3.59622 0.11624 3.50177 39 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547 40 3.09705 2.60051 3.14488 0.17732 40 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547 41 3.44273 0.12907 3.49178 2.83600 41 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547 42 3.09705 2.60051 3.14488 0.17732 42 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547 43 2.95334 3.59622 0.11624 3.50177 43 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547 44 3.09705 2.60051 3.14488 0.17732 44 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547 45 3.09705 2.60051 3.14488 0.17732 45 - - 1.38629 1.38629 1.38629 1.38629 0.01852 3.99799 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Raphidophyceae_58S_end_two_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Thu Jan 19 22:28:17 2012 NSEQ 2 EFFN 2.000000 CKSUM 3536786290 STATS LOCAL MSV -7.4659 0.72801 STATS LOCAL VITERBI -8.3758 0.72801 STATS LOCAL FORWARD -3.4843 0.72801 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.92192 1.27826 1.22095 1.27224 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.81865 0.23582 2.88868 2.35662 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.53331 3.02441 0.20344 2.88069 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.57915 2.25909 2.64442 0.28946 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.81865 0.23582 2.88868 2.35662 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.23862 2.84929 2.43386 2.70756 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.57915 2.25909 2.64442 0.28946 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.81865 0.23582 2.88868 2.35662 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.81865 0.23582 2.88868 2.35662 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.81865 0.23582 2.88868 2.35662 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.53331 3.02441 0.20344 2.88069 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.23862 2.84929 2.43386 2.70756 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.57915 2.25909 2.64442 0.28946 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.57915 2.25909 2.64442 0.28946 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53331 3.02441 0.20344 2.88069 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.81865 0.23582 2.88868 2.35662 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.53331 3.02441 0.20344 2.88069 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.57915 2.25909 2.64442 0.28946 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Raphidophyceae_58S_start_one_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Thu Jan 19 22:20:20 2012 NSEQ 55 EFFN 3.481140 CKSUM 1990027650 STATS LOCAL MSV -7.4661 0.71933 STATS LOCAL VITERBI -7.6976 0.71933 STATS LOCAL FORWARD -4.3165 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.41421 1.31471 1.35031 1.47329 1.38629 1.38629 1.38629 1.38629 0.03584 4.03974 4.03974 1.46634 0.26236 0.00000 * 1 3.48996 0.12363 3.53697 2.87020 1 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547 2 2.98169 3.63765 0.11184 3.54756 2 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547 3 0.13554 3.42968 2.83393 3.33606 3 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547 4 3.48996 0.12363 3.53697 2.87020 4 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547 5 3.13877 2.62701 3.18500 0.17080 5 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547 6 3.13877 2.62701 3.18500 0.17080 6 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547 7 3.13877 2.62701 3.18500 0.17080 7 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547 8 3.48996 0.12363 3.53697 2.87020 8 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547 9 0.13554 3.42968 2.83393 3.33606 9 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547 10 2.98169 3.63765 0.11184 3.54756 10 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547 11 3.48996 0.12363 3.53697 2.87020 11 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547 12 0.83378 2.54150 0.92669 2.39705 12 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547 13 2.98169 3.63765 0.11184 3.54756 13 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547 14 3.48996 0.12363 3.53697 2.87020 14 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547 15 2.98169 3.63765 0.11184 3.54756 15 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547 16 2.98169 3.63765 0.11184 3.54756 16 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547 17 0.13554 3.42968 2.83393 3.33606 17 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547 18 3.13877 2.62701 3.18500 0.17080 18 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547 19 2.98169 3.63765 0.11184 3.54756 19 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547 20 3.13877 2.62701 3.18500 0.17080 20 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547 21 3.48996 0.12363 3.53697 2.87020 21 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547 22 3.13877 2.62701 3.18500 0.17080 22 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547 23 3.13877 2.62701 3.18500 0.17080 23 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547 24 2.98169 3.63765 0.11184 3.54756 24 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547 25 2.98169 3.63765 0.11184 3.54756 25 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547 26 3.13877 2.62701 3.18500 0.17080 26 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547 27 3.13877 2.62701 3.18500 0.17080 27 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547 28 3.48996 0.12363 3.53697 2.87020 28 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547 29 3.48996 0.12363 3.53697 2.87020 29 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547 30 3.48996 0.12363 3.53697 2.87020 30 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547 31 0.13554 3.42968 2.83393 3.33606 31 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547 32 3.48996 0.12363 3.53697 2.87020 32 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547 33 0.13554 3.42968 2.83393 3.33606 33 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547 34 0.91891 2.17063 2.17690 0.98471 34 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547 35 3.48996 0.12363 3.53697 2.87020 35 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547 36 2.98169 3.63765 0.11184 3.54756 36 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547 37 0.13554 3.42968 2.83393 3.33606 37 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547 38 3.13877 2.62701 3.18500 0.17080 38 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547 39 2.98169 3.63765 0.11184 3.54756 39 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547 40 0.13554 3.42968 2.83393 3.33606 40 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547 41 0.13554 3.42968 2.83393 3.33606 41 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547 42 2.98169 3.63765 0.11184 3.54756 42 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547 43 0.13554 3.42968 2.83393 3.33606 43 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547 44 0.13554 3.42968 2.83393 3.33606 44 - - 1.38629 1.38629 1.38629 1.38629 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547 45 3.48996 0.12363 3.53697 2.87020 45 - - 1.38629 1.38629 1.38629 1.38629 0.01808 4.02198 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Raphidophyceae_58S_start_two_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Oct 8 23:41:06 2011 NSEQ 2 EFFN 2.000000 CKSUM 4228921988 STATS LOCAL MSV -7.5411 0.72814 STATS LOCAL VITERBI -8.1860 0.72814 STATS LOCAL FORWARD -3.8575 0.72814 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.23782 1.40044 1.49697 1.42842 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.57915 2.25909 2.64442 0.28946 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.23862 2.84929 2.43386 2.70756 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.23862 2.84929 2.43386 2.70756 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.57915 2.25909 2.64442 0.28946 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.57915 2.25909 2.64442 0.28946 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 0.23862 2.84929 2.43386 2.70756 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.81865 0.23582 2.88868 2.35662 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.23862 2.84929 2.43386 2.70756 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.23862 2.84929 2.43386 2.70756 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.57915 2.25909 2.64442 0.28946 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.81865 0.23582 2.88868 2.35662 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.57915 2.25909 2.64442 0.28946 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.57915 2.25909 2.64442 0.28946 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.53331 3.02441 0.20344 2.88069 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.53331 3.02441 0.20344 2.88069 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.81865 0.23582 2.88868 2.35662 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.57915 2.25909 2.64442 0.28946 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.81865 0.23582 2.88868 2.35662 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 0.23862 2.84929 2.43386 2.70756 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.23862 2.84929 2.43386 2.70756 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.23862 2.84929 2.43386 2.70756 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.53331 3.02441 0.20344 2.88069 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.23862 2.84929 2.43386 2.70756 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.23862 2.84929 2.43386 2.70756 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.53331 3.02441 0.20344 2.88069 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.23862 2.84929 2.43386 2.70756 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.81865 0.23582 2.88868 2.35662 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Raphidophyceae_4_LSU_start_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Oct 8 23:57:11 2011 NSEQ 23 EFFN 3.293335 CKSUM 2676057667 STATS LOCAL MSV -8.1976 0.71932 STATS LOCAL VITERBI -7.6482 0.71932 STATS LOCAL FORWARD -3.7861 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.06153 1.46136 1.69261 1.43500 1.38629 1.38629 1.38629 1.38629 0.03709 4.00612 4.00612 1.46634 0.26236 0.00000 * 1 3.07909 2.58908 3.12761 0.18022 1 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547 2 3.07909 2.58908 3.12761 0.18022 2 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547 3 3.42223 0.13151 3.47214 2.82107 3 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547 4 0.14315 3.37082 2.79579 3.27159 4 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547 5 2.94093 3.57817 0.11821 3.48184 5 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547 6 0.14315 3.37082 2.79579 3.27159 6 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547 7 3.07909 2.58908 3.12761 0.18022 7 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547 8 3.42223 0.13151 3.47214 2.82107 8 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547 9 3.07909 2.58908 3.12761 0.18022 9 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547 10 3.42223 0.13151 3.47214 2.82107 10 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547 11 3.07909 2.58908 3.12761 0.18022 11 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547 12 0.14315 3.37082 2.79579 3.27159 12 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547 13 0.14315 3.37082 2.79579 3.27159 13 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547 14 3.07909 2.58908 3.12761 0.18022 14 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547 15 3.42223 0.13151 3.47214 2.82107 15 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547 16 0.14315 3.37082 2.79579 3.27159 16 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547 17 0.14315 3.37082 2.79579 3.27159 17 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547 18 2.94093 3.57817 0.11821 3.48184 18 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547 19 3.42223 0.13151 3.47214 2.82107 19 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547 20 0.14315 3.37082 2.79579 3.27159 20 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547 21 0.14315 3.37082 2.79579 3.27159 21 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547 22 2.94093 3.57817 0.11821 3.48184 22 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547 23 0.14315 3.37082 2.79579 3.27159 23 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547 24 0.14315 3.37082 2.79579 3.27159 24 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547 25 2.94093 3.57817 0.11821 3.48184 25 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547 26 0.14315 3.37082 2.79579 3.27159 26 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547 27 3.42223 0.13151 3.47214 2.82107 27 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547 28 3.42223 0.13151 3.47214 2.82107 28 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547 29 3.42223 0.13151 3.47214 2.82107 29 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547 30 2.94093 3.57817 0.11821 3.48184 30 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547 31 3.42223 0.13151 3.47214 2.82107 31 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547 32 3.07909 2.58908 3.12761 0.18022 32 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547 33 2.94093 3.57817 0.11821 3.48184 33 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547 34 0.14315 3.37082 2.79579 3.27159 34 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547 35 0.14315 3.37082 2.79579 3.27159 35 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547 36 3.07909 2.58908 3.12761 0.18022 36 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547 37 3.07909 2.58908 3.12761 0.18022 37 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547 38 3.07909 2.58908 3.12761 0.18022 38 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547 39 0.14315 3.37082 2.79579 3.27159 39 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547 40 0.14315 3.37082 2.79579 3.27159 40 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547 41 2.94093 3.57817 0.11821 3.48184 41 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547 42 3.42223 0.13151 3.47214 2.82107 42 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547 43 0.14315 3.37082 2.79579 3.27159 43 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547 44 3.07909 2.58908 3.12761 0.18022 44 - - 1.38629 1.38629 1.38629 1.38629 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547 45 0.14315 3.37082 2.79579 3.27159 45 - - 1.38629 1.38629 1.38629 1.38629 0.01872 3.98775 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 1_SSU_Raphidophyceae_1_SSU_end_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Oct 8 23:33:58 2011 NSEQ 4 EFFN 3.230469 CKSUM 805615287 STATS LOCAL MSV -8.0211 0.71931 STATS LOCAL VITERBI -7.6818 0.71931 STATS LOCAL FORWARD -4.1105 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.27186 1.62653 1.24657 1.44566 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 0.00000 * 1 0.14592 3.35028 2.78241 3.24912 1 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 2 2.92650 3.55724 0.12055 3.45877 2 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 3 3.05845 2.57594 3.10775 0.18362 3 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 4 3.39853 0.13441 3.44944 2.80375 4 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 5 2.92650 3.55724 0.12055 3.45877 5 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 6 3.05845 2.57594 3.10775 0.18362 6 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 7 0.14592 3.35028 2.78241 3.24912 7 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 8 0.14592 3.35028 2.78241 3.24912 8 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 9 3.39853 0.13441 3.44944 2.80375 9 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 10 0.14592 3.35028 2.78241 3.24912 10 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 11 0.14592 3.35028 2.78241 3.24912 11 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 12 2.92650 3.55724 0.12055 3.45877 12 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 13 2.92650 3.55724 0.12055 3.45877 13 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 14 3.05845 2.57594 3.10775 0.18362 14 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 15 3.05845 2.57594 3.10775 0.18362 15 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 16 3.05845 2.57594 3.10775 0.18362 16 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 17 3.39853 0.13441 3.44944 2.80375 17 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 18 3.39853 0.13441 3.44944 2.80375 18 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 19 2.92650 3.55724 0.12055 3.45877 19 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 20 3.05845 2.57594 3.10775 0.18362 20 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 21 0.14592 3.35028 2.78241 3.24912 21 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 22 2.92650 3.55724 0.12055 3.45877 22 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 23 2.92650 3.55724 0.12055 3.45877 23 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 24 3.05845 2.57594 3.10775 0.18362 24 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 25 2.92650 3.55724 0.12055 3.45877 25 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 26 0.14592 3.35028 2.78241 3.24912 26 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 27 0.14592 3.35028 2.78241 3.24912 27 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 28 3.39853 0.13441 3.44944 2.80375 28 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 29 3.39853 0.13441 3.44944 2.80375 29 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 30 3.05845 2.57594 3.10775 0.18362 30 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 31 2.92650 3.55724 0.12055 3.45877 31 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 32 3.39853 0.13441 3.44944 2.80375 32 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 33 2.92650 3.55724 0.12055 3.45877 33 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 34 2.92650 3.55724 0.12055 3.45877 34 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 35 0.14592 3.35028 2.78241 3.24912 35 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 36 0.14592 3.35028 2.78241 3.24912 36 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 37 2.92650 3.55724 0.12055 3.45877 37 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 38 2.92650 3.55724 0.12055 3.45877 38 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 39 0.14592 3.35028 2.78241 3.24912 39 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 40 3.05845 2.57594 3.10775 0.18362 40 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 41 3.39853 0.13441 3.44944 2.80375 41 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 42 0.14592 3.35028 2.78241 3.24912 42 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 43 3.05845 2.57594 3.10775 0.18362 43 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 44 3.05845 2.57594 3.10775 0.18362 44 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 45 0.14592 3.35028 2.78241 3.24912 45 - - 1.38629 1.38629 1.38629 1.38629 0.01894 3.97602 * 1.46634 0.26236 0.00000 * //