annotate tool_dependencies.xml @ 7:a1c96ef6c111 draft

Uploaded updated wrapper
author pavlo-lutsik
date Wed, 17 Apr 2013 08:45:05 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
7
a1c96ef6c111 Uploaded updated wrapper
pavlo-lutsik
parents:
diff changeset
1 <?xml version="1.0"?>
a1c96ef6c111 Uploaded updated wrapper
pavlo-lutsik
parents:
diff changeset
2 <tool_dependency>
a1c96ef6c111 Uploaded updated wrapper
pavlo-lutsik
parents:
diff changeset
3 <set_environment version="0.9">
a1c96ef6c111 Uploaded updated wrapper
pavlo-lutsik
parents:
diff changeset
4 <environment_variable name="R_SCRIPTS_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable>
a1c96ef6c111 Uploaded updated wrapper
pavlo-lutsik
parents:
diff changeset
5 </set_environment>
a1c96ef6c111 Uploaded updated wrapper
pavlo-lutsik
parents:
diff changeset
6 <package name="R" version="3.0.0">
a1c96ef6c111 Uploaded updated wrapper
pavlo-lutsik
parents:
diff changeset
7 <install version="0.9">
a1c96ef6c111 Uploaded updated wrapper
pavlo-lutsik
parents:
diff changeset
8 <actions>
a1c96ef6c111 Uploaded updated wrapper
pavlo-lutsik
parents:
diff changeset
9 <action type="download_by_url">http://CRAN.R-project.org/src/base/R-3/R-3.0.0.tar.gz</action>
a1c96ef6c111 Uploaded updated wrapper
pavlo-lutsik
parents:
diff changeset
10 <action type="shell_command">./configure --prefix=$INSTALL_DIR --with-x=no</action>
a1c96ef6c111 Uploaded updated wrapper
pavlo-lutsik
parents:
diff changeset
11 <action type="shell_command">make</action>
a1c96ef6c111 Uploaded updated wrapper
pavlo-lutsik
parents:
diff changeset
12 <action type="set_environment">
a1c96ef6c111 Uploaded updated wrapper
pavlo-lutsik
parents:
diff changeset
13 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
a1c96ef6c111 Uploaded updated wrapper
pavlo-lutsik
parents:
diff changeset
14 </action>
a1c96ef6c111 Uploaded updated wrapper
pavlo-lutsik
parents:
diff changeset
15 <action type="shell_command">R --no-save &lt;&lt;&lt; "install.packages("getopt"); source('http://rnbeads.mpi-inf.mpg.de')"</action>
a1c96ef6c111 Uploaded updated wrapper
pavlo-lutsik
parents:
diff changeset
16 </actions>
a1c96ef6c111 Uploaded updated wrapper
pavlo-lutsik
parents:
diff changeset
17 </install>
a1c96ef6c111 Uploaded updated wrapper
pavlo-lutsik
parents:
diff changeset
18 <readme>
a1c96ef6c111 Uploaded updated wrapper
pavlo-lutsik
parents:
diff changeset
19 You need a FORTRAN compiler or perhaps f2c in addition to a C compiler to build R.
a1c96ef6c111 Uploaded updated wrapper
pavlo-lutsik
parents:
diff changeset
20 </readme>
a1c96ef6c111 Uploaded updated wrapper
pavlo-lutsik
parents:
diff changeset
21 </package>
a1c96ef6c111 Uploaded updated wrapper
pavlo-lutsik
parents:
diff changeset
22 </tool_dependency>