Mercurial > repos > perssond > basic_illumination
view macros.xml @ 3:7ee5b6f7533e draft default tip
planemo upload for repository https://github.com/labsyspharm/basic-illumination commit 384bcb73bece365356d3aaaebffd545b01a35aa1
author | goeckslab |
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date | Wed, 21 Feb 2024 23:18:46 +0000 |
parents | acc6f509968c |
children |
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<?xml version="1.0"?> <macros> <xml name="requirements"> <requirements> <container type="docker">labsyspharm/basic-illumination:@TOOL_VERSION@</container> </requirements> </xml> <xml name="version_cmd"> <version_command>echo @TOOL_VERSION@</version_command> </xml> <xml name="citations"> <citations> <citation type="doi">10.1038/ncomms14836</citation> </citations> </xml> <token name="@TOOL_VERSION@">1.1.1</token> <token name="@VERSION_SUFFIX@">2</token> <token name="@PROFILE@">19.01</token> <token name="@CMD_BEGIN@"><![CDATA[ ## if ImageJ isn't already present, this is the docker-dependency version ## as such, ImageJ needs to be registered as a global executable on $PATH if ! [ -x "\$(which ImageJ)" ]; then ln -sf "\$(which ImageJ-linux64)" "ImageJ"; export PATH="\$PATH:\$(pwd)/"; fi && BASIC_SCRIPT="" && if [ -f "/opt/fiji/imagej_basic_ashlar.py" ]; then export BASIC_SCRIPT="/opt/fiji/imagej_basic_ashlar.py"; else export BASIC_SCRIPT="${__tool_directory__}/imagej_basic_ashlar.py"; fi && ImageJ --ij2 --headless --run \$BASIC_SCRIPT ]]></token> </macros>