coreograph: toolbox/ftools.py comparison

"planemo upload for repository https://github.com/ohsu-comp-bio/UNetCoreograph commit fb90660a1805b3f68fcff80d525b5459c3f7dfd6-dirty"

comparison

equal deleted inserted replaced

--1:000000000000
+:99308601eaa6
+from os.path import *
+from os import listdir, makedirs, remove
+import pickle
+import shutil
+def fileparts(path): # path = file path
+[p,f] = split(path)
+[n,e] = splitext(f)
+return [p,n,e]
+def listfiles(path,token): # path = folder path
+l = []
+for f in listdir(path):
+fullPath = join(path,f)
+if isfile(fullPath) and token in f:
+l.append(fullPath)
+l.sort()
+return l
+def listsubdirs(path): # path = folder path
+l = []
+for f in listdir(path):
+fullPath = join(path,f)
+if isdir(fullPath):
+l.append(fullPath)
+l.sort()
+return l
+def pathjoin(p,ne): # '/path/to/folder', 'name.extension' (or a subfolder)
+return join(p,ne)
+def saveData(data,path):
+print('saving data')
+dataFile = open(path, 'wb')
+pickle.dump(data, dataFile)
+def loadData(path):
+print('loading data')
+dataFile = open(path, 'rb')
+return pickle.load(dataFile)
+def createFolderIfNonExistent(path):
+if not exists(path): # from os.path
+makedirs(path)
+def moveFile(fullPathSource,folderPathDestination):
+[p,n,e] = fileparts(fullPathSource)
+shutil.move(fullPathSource,pathjoin(folderPathDestination,n+e))
+def copyFile(fullPathSource,folderPathDestination):
+[p,n,e] = fileparts(fullPathSource)
+shutil.copy(fullPathSource,pathjoin(folderPathDestination,n+e))
+def removeFile(path):
+remove(path)

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