Mercurial > repos > perssond > coreograph
view toolbox/ftools.py @ 0:99308601eaa6 draft
"planemo upload for repository https://github.com/ohsu-comp-bio/UNetCoreograph commit fb90660a1805b3f68fcff80d525b5459c3f7dfd6-dirty"
author | perssond |
---|---|
date | Wed, 19 May 2021 21:34:38 +0000 |
parents | |
children |
line wrap: on
line source
from os.path import * from os import listdir, makedirs, remove import pickle import shutil def fileparts(path): # path = file path [p,f] = split(path) [n,e] = splitext(f) return [p,n,e] def listfiles(path,token): # path = folder path l = [] for f in listdir(path): fullPath = join(path,f) if isfile(fullPath) and token in f: l.append(fullPath) l.sort() return l def listsubdirs(path): # path = folder path l = [] for f in listdir(path): fullPath = join(path,f) if isdir(fullPath): l.append(fullPath) l.sort() return l def pathjoin(p,ne): # '/path/to/folder', 'name.extension' (or a subfolder) return join(p,ne) def saveData(data,path): print('saving data') dataFile = open(path, 'wb') pickle.dump(data, dataFile) def loadData(path): print('loading data') dataFile = open(path, 'rb') return pickle.load(dataFile) def createFolderIfNonExistent(path): if not exists(path): # from os.path makedirs(path) def moveFile(fullPathSource,folderPathDestination): [p,n,e] = fileparts(fullPathSource) shutil.move(fullPathSource,pathjoin(folderPathDestination,n+e)) def copyFile(fullPathSource,folderPathDestination): [p,n,e] = fileparts(fullPathSource) shutil.copy(fullPathSource,pathjoin(folderPathDestination,n+e)) def removeFile(path): remove(path)