Mercurial > repos > perssond > quantification
diff macros.xml @ 1:aba3655fdef0 draft
"planemo upload for repository https://github.com/ohsu-comp-bio/quantification commit 897a7dc7cb43e45d6f0fdfe2b2970e59f20f8853"
| author | watsocam |
|---|---|
| date | Fri, 11 Mar 2022 23:35:52 +0000 |
| parents | 928db0f952e3 |
| children | 261464223fa3 |
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--- a/macros.xml Fri Mar 12 00:19:24 2021 +0000 +++ b/macros.xml Fri Mar 11 23:35:52 2022 +0000 @@ -2,12 +2,13 @@ <macros> <xml name="requirements"> <requirements> - <requirement type="package" version="3.6.10">python</requirement> - <requirement type="package" version="0.17.2">scikit-image</requirement> - <requirement type="package" version="2.10.0">h5py</requirement> - <requirement type="package" version="1.0.4">pandas</requirement> - <requirement type="package" version="1.18.5">numpy</requirement> - <requirement type="package" version="1.0.1">pathlib</requirement> + <container type="docker">labsyspharm/quantification:@VERSION@</container> + <requirement type="package" version="3.9">python</requirement> + <requirement type="package" version="0.18.0">scikit-image</requirement> + <requirement type="package">h5py</requirement> + <requirement type="package">pandas</requirement> + <requirement type="package">numpy</requirement> + <requirement type="package">pathlib</requirement> </requirements> </xml> @@ -19,6 +20,13 @@ </citations> </xml> - <token name="@VERSION@">1.3.1</token> - <token name="@CMD_BEGIN@">python ${__tool_directory__}/CommandSingleCellExtraction.py</token> + <token name="@VERSION@">1.5.1</token> + <token name="@CMD_BEGIN@"><![CDATA[ + QUANT_PATH=""; + if [ -f "/app/CommandSingleCellExtraction.py" ]; then + export QUANT_PATH="/app/CommandSingleCellExtraction.py"; + else + export QUANT_PATH="${__tool_directory__}/CommandSingleCellExtraction.py"; + fi; + ]]></token> </macros>