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annotate macros.xml @ 1:aba3655fdef0 draft

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"planemo upload for repository https://github.com/ohsu-comp-bio/quantification commit 897a7dc7cb43e45d6f0fdfe2b2970e59f20f8853"
author watsocam
date Fri, 11 Mar 2022 23:35:52 +0000
parents 928db0f952e3
children 261464223fa3
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928db0f952e3 "planemo upload for repository https://github.com/ohsu-comp-bio/quantification commit a4349062e9177b5e60fb7c49115c57299e0d648d-dirty"
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1 <?xml version="1.0"?>
928db0f952e3 "planemo upload for repository https://github.com/ohsu-comp-bio/quantification commit a4349062e9177b5e60fb7c49115c57299e0d648d-dirty"
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2 <macros>
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3 <xml name="requirements">
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4 <requirements>
1
aba3655fdef0 "planemo upload for repository https://github.com/ohsu-comp-bio/quantification commit 897a7dc7cb43e45d6f0fdfe2b2970e59f20f8853"
watsocam
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5 <container type="docker">labsyspharm/quantification:@VERSION@</container>
aba3655fdef0 "planemo upload for repository https://github.com/ohsu-comp-bio/quantification commit 897a7dc7cb43e45d6f0fdfe2b2970e59f20f8853"
watsocam
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6 <requirement type="package" version="3.9">python</requirement>
aba3655fdef0 "planemo upload for repository https://github.com/ohsu-comp-bio/quantification commit 897a7dc7cb43e45d6f0fdfe2b2970e59f20f8853"
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7 <requirement type="package" version="0.18.0">scikit-image</requirement>
aba3655fdef0 "planemo upload for repository https://github.com/ohsu-comp-bio/quantification commit 897a7dc7cb43e45d6f0fdfe2b2970e59f20f8853"
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8 <requirement type="package">h5py</requirement>
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9 <requirement type="package">pandas</requirement>
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10 <requirement type="package">numpy</requirement>
aba3655fdef0 "planemo upload for repository https://github.com/ohsu-comp-bio/quantification commit 897a7dc7cb43e45d6f0fdfe2b2970e59f20f8853"
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11 <requirement type="package">pathlib</requirement>
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12 </requirements>
928db0f952e3 "planemo upload for repository https://github.com/ohsu-comp-bio/quantification commit a4349062e9177b5e60fb7c49115c57299e0d648d-dirty"
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13 </xml>
928db0f952e3 "planemo upload for repository https://github.com/ohsu-comp-bio/quantification commit a4349062e9177b5e60fb7c49115c57299e0d648d-dirty"
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14
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15 <xml name="version_cmd">
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16 <version_command>echo @VERSION@</version_command>
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17 </xml>
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18 <xml name="citations">
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19 <citations>
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20 </citations>
928db0f952e3 "planemo upload for repository https://github.com/ohsu-comp-bio/quantification commit a4349062e9177b5e60fb7c49115c57299e0d648d-dirty"
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21 </xml>
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22
1
aba3655fdef0 "planemo upload for repository https://github.com/ohsu-comp-bio/quantification commit 897a7dc7cb43e45d6f0fdfe2b2970e59f20f8853"
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23 <token name="@VERSION@">1.5.1</token>
aba3655fdef0 "planemo upload for repository https://github.com/ohsu-comp-bio/quantification commit 897a7dc7cb43e45d6f0fdfe2b2970e59f20f8853"
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24 <token name="@CMD_BEGIN@"><![CDATA[
aba3655fdef0 "planemo upload for repository https://github.com/ohsu-comp-bio/quantification commit 897a7dc7cb43e45d6f0fdfe2b2970e59f20f8853"
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25 QUANT_PATH="";
aba3655fdef0 "planemo upload for repository https://github.com/ohsu-comp-bio/quantification commit 897a7dc7cb43e45d6f0fdfe2b2970e59f20f8853"
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26 if [ -f "/app/CommandSingleCellExtraction.py" ]; then
aba3655fdef0 "planemo upload for repository https://github.com/ohsu-comp-bio/quantification commit 897a7dc7cb43e45d6f0fdfe2b2970e59f20f8853"
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27 export QUANT_PATH="/app/CommandSingleCellExtraction.py";
aba3655fdef0 "planemo upload for repository https://github.com/ohsu-comp-bio/quantification commit 897a7dc7cb43e45d6f0fdfe2b2970e59f20f8853"
watsocam
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28 else
aba3655fdef0 "planemo upload for repository https://github.com/ohsu-comp-bio/quantification commit 897a7dc7cb43e45d6f0fdfe2b2970e59f20f8853"
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29 export QUANT_PATH="${__tool_directory__}/CommandSingleCellExtraction.py";
aba3655fdef0 "planemo upload for repository https://github.com/ohsu-comp-bio/quantification commit 897a7dc7cb43e45d6f0fdfe2b2970e59f20f8853"
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30 fi;
aba3655fdef0 "planemo upload for repository https://github.com/ohsu-comp-bio/quantification commit 897a7dc7cb43e45d6f0fdfe2b2970e59f20f8853"
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31 ]]></token>
0
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32 </macros>