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planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/s3segmenter commit 0f4f17235c5961c2fd3d4c30180507f66214c11d
author goeckslab
date Fri, 16 Sep 2022 20:05:54 +0000
parents 41e8efe8df43
children
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37acf42a824b "planemo upload for repository https://github.com/ohsu-comp-bio/S3segmenter commit d89a61efd4c465a1e6bf5b99b0f78fb19be5bdea-dirty"
perssond
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1 <?xml version="1.0"?>
37acf42a824b "planemo upload for repository https://github.com/ohsu-comp-bio/S3segmenter commit d89a61efd4c465a1e6bf5b99b0f78fb19be5bdea-dirty"
perssond
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2 <macros>
37acf42a824b "planemo upload for repository https://github.com/ohsu-comp-bio/S3segmenter commit d89a61efd4c465a1e6bf5b99b0f78fb19be5bdea-dirty"
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3 <xml name="requirements">
37acf42a824b "planemo upload for repository https://github.com/ohsu-comp-bio/S3segmenter commit d89a61efd4c465a1e6bf5b99b0f78fb19be5bdea-dirty"
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4 <requirements>
2
96d0d969ebc9 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/s3segmenter commit 0f4f17235c5961c2fd3d4c30180507f66214c11d
goeckslab
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5 <!--
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41e8efe8df43 "planemo upload for repository https://github.com/ohsu-comp-bio/S3segmenter commit c8f72e04db2cc6cc26f0359d5aa3b1a972bc6d53"
watsocam
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6 <requirement type="package" version="3.7">python</requirement>
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37acf42a824b "planemo upload for repository https://github.com/ohsu-comp-bio/S3segmenter commit d89a61efd4c465a1e6bf5b99b0f78fb19be5bdea-dirty"
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7 <requirement type="package">scikit-learn</requirement>
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41e8efe8df43 "planemo upload for repository https://github.com/ohsu-comp-bio/S3segmenter commit c8f72e04db2cc6cc26f0359d5aa3b1a972bc6d53"
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8 <requirement version="0.14.2" type="package">scikit-image</requirement>
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37acf42a824b "planemo upload for repository https://github.com/ohsu-comp-bio/S3segmenter commit d89a61efd4c465a1e6bf5b99b0f78fb19be5bdea-dirty"
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9 <requirement type="package">matplotlib</requirement>
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41e8efe8df43 "planemo upload for repository https://github.com/ohsu-comp-bio/S3segmenter commit c8f72e04db2cc6cc26f0359d5aa3b1a972bc6d53"
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10 <requirement version="2021.6.6" type="package">tifffile</requirement>
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37acf42a824b "planemo upload for repository https://github.com/ohsu-comp-bio/S3segmenter commit d89a61efd4c465a1e6bf5b99b0f78fb19be5bdea-dirty"
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11 <requirement type="package">opencv</requirement>
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96d0d969ebc9 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/s3segmenter commit 0f4f17235c5961c2fd3d4c30180507f66214c11d
goeckslab
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12 -->
96d0d969ebc9 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/s3segmenter commit 0f4f17235c5961c2fd3d4c30180507f66214c11d
goeckslab
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13 <container type="docker">labsyspharm/s3segmenter:@TOOL_VERSION@</container>
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37acf42a824b "planemo upload for repository https://github.com/ohsu-comp-bio/S3segmenter commit d89a61efd4c465a1e6bf5b99b0f78fb19be5bdea-dirty"
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14 </requirements>
37acf42a824b "planemo upload for repository https://github.com/ohsu-comp-bio/S3segmenter commit d89a61efd4c465a1e6bf5b99b0f78fb19be5bdea-dirty"
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15 </xml>
37acf42a824b "planemo upload for repository https://github.com/ohsu-comp-bio/S3segmenter commit d89a61efd4c465a1e6bf5b99b0f78fb19be5bdea-dirty"
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37acf42a824b "planemo upload for repository https://github.com/ohsu-comp-bio/S3segmenter commit d89a61efd4c465a1e6bf5b99b0f78fb19be5bdea-dirty"
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17 <xml name="citations">
37acf42a824b "planemo upload for repository https://github.com/ohsu-comp-bio/S3segmenter commit d89a61efd4c465a1e6bf5b99b0f78fb19be5bdea-dirty"
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18 <citations>
37acf42a824b "planemo upload for repository https://github.com/ohsu-comp-bio/S3segmenter commit d89a61efd4c465a1e6bf5b99b0f78fb19be5bdea-dirty"
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19 </citations>
37acf42a824b "planemo upload for repository https://github.com/ohsu-comp-bio/S3segmenter commit d89a61efd4c465a1e6bf5b99b0f78fb19be5bdea-dirty"
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20 </xml>
37acf42a824b "planemo upload for repository https://github.com/ohsu-comp-bio/S3segmenter commit d89a61efd4c465a1e6bf5b99b0f78fb19be5bdea-dirty"
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21
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96d0d969ebc9 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/s3segmenter commit 0f4f17235c5961c2fd3d4c30180507f66214c11d
goeckslab
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22 <token name="@TOOL_VERSION@">1.3.12</token>
96d0d969ebc9 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/s3segmenter commit 0f4f17235c5961c2fd3d4c30180507f66214c11d
goeckslab
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23 <token name="@VERSION_SUFFIX@">0</token>
96d0d969ebc9 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/s3segmenter commit 0f4f17235c5961c2fd3d4c30180507f66214c11d
goeckslab
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24 <token name="@PROFILE@">19.01</token>
96d0d969ebc9 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/s3segmenter commit 0f4f17235c5961c2fd3d4c30180507f66214c11d
goeckslab
parents: 1
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25 <token name="@CMD_BEGIN@"><![CDATA[
96d0d969ebc9 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/s3segmenter commit 0f4f17235c5961c2fd3d4c30180507f66214c11d
goeckslab
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26 S3SEG_CMD="" &&
96d0d969ebc9 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/s3segmenter commit 0f4f17235c5961c2fd3d4c30180507f66214c11d
goeckslab
parents: 1
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27 if [ -f "/app/S3segmenter.py" ]; then
96d0d969ebc9 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/s3segmenter commit 0f4f17235c5961c2fd3d4c30180507f66214c11d
goeckslab
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28 export S3SEG_CMD="python /app/S3segmenter.py";
96d0d969ebc9 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/s3segmenter commit 0f4f17235c5961c2fd3d4c30180507f66214c11d
goeckslab
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29 export PYTHONPATH="/app";
96d0d969ebc9 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/s3segmenter commit 0f4f17235c5961c2fd3d4c30180507f66214c11d
goeckslab
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30 else
96d0d969ebc9 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/s3segmenter commit 0f4f17235c5961c2fd3d4c30180507f66214c11d
goeckslab
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31 export S3SEG_CMD="S3segmenter.py";
96d0d969ebc9 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/s3segmenter commit 0f4f17235c5961c2fd3d4c30180507f66214c11d
goeckslab
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32 fi &&
96d0d969ebc9 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/s3segmenter commit 0f4f17235c5961c2fd3d4c30180507f66214c11d
goeckslab
parents: 1
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33 ]]></token>
96d0d969ebc9 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/s3segmenter commit 0f4f17235c5961c2fd3d4c30180507f66214c11d
goeckslab
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34 <xml name="version_cmd">
96d0d969ebc9 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/s3segmenter commit 0f4f17235c5961c2fd3d4c30180507f66214c11d
goeckslab
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35 <version_command>@CMD_BEGIN@ $S3SEG_CMD --help</version_command>
96d0d969ebc9 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/s3segmenter commit 0f4f17235c5961c2fd3d4c30180507f66214c11d
goeckslab
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36 </xml>
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37acf42a824b "planemo upload for repository https://github.com/ohsu-comp-bio/S3segmenter commit d89a61efd4c465a1e6bf5b99b0f78fb19be5bdea-dirty"
perssond
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37 </macros>