Mercurial > repos > perssond > unmicst

annotate macros.xml @ 1:74fe58ff55a5 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/HMS-IDAC/UnMicst commit e14f76a8803cab0013c6dbe809bc81d7667f2ab9
author goeckslab
date Wed, 07 Sep 2022 23:10:14 +0000
parents 6bec4fef6b2e
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
6bec4fef6b2e "planemo upload for repository https://github.com/ohsu-comp-bio/unmicst commit 73e4cae15f2d7cdc86719e77470eb00af4b6ebb7-dirty"
perssond
parents:
diff changeset
1 <?xml version="1.0"?>
6bec4fef6b2e "planemo upload for repository https://github.com/ohsu-comp-bio/unmicst commit 73e4cae15f2d7cdc86719e77470eb00af4b6ebb7-dirty"
perssond
parents:
diff changeset
2 <macros>
6bec4fef6b2e "planemo upload for repository https://github.com/ohsu-comp-bio/unmicst commit 73e4cae15f2d7cdc86719e77470eb00af4b6ebb7-dirty"
perssond
parents:
diff changeset
3 <xml name="requirements">
6bec4fef6b2e "planemo upload for repository https://github.com/ohsu-comp-bio/unmicst commit 73e4cae15f2d7cdc86719e77470eb00af4b6ebb7-dirty"
perssond
parents:
diff changeset
4 <requirements>
1
74fe58ff55a5 planemo upload for repository https://github.com/HMS-IDAC/UnMicst commit e14f76a8803cab0013c6dbe809bc81d7667f2ab9
goeckslab
parents: 0
diff changeset
5 <container type="docker">labsyspharm/unmicst:@TOOL_VERSION@</container>
74fe58ff55a5 planemo upload for repository https://github.com/HMS-IDAC/UnMicst commit e14f76a8803cab0013c6dbe809bc81d7667f2ab9
goeckslab
parents: 0
diff changeset
6 <!--
0
6bec4fef6b2e "planemo upload for repository https://github.com/ohsu-comp-bio/unmicst commit 73e4cae15f2d7cdc86719e77470eb00af4b6ebb7-dirty"
perssond
parents:
diff changeset
7 <requirement type="package" version="3.7">python</requirement>
6bec4fef6b2e "planemo upload for repository https://github.com/ohsu-comp-bio/unmicst commit 73e4cae15f2d7cdc86719e77470eb00af4b6ebb7-dirty"
perssond
parents:
diff changeset
8 <requirement type="package" version="1.15.0">tensorflow</requirement>
6bec4fef6b2e "planemo upload for repository https://github.com/ohsu-comp-bio/unmicst commit 73e4cae15f2d7cdc86719e77470eb00af4b6ebb7-dirty"
perssond
parents:
diff changeset
9 <requirement type="package" version="1.15.1">tensorflow-estimator</requirement>
6bec4fef6b2e "planemo upload for repository https://github.com/ohsu-comp-bio/unmicst commit 73e4cae15f2d7cdc86719e77470eb00af4b6ebb7-dirty"
perssond
parents:
diff changeset
10 <requirement type="package">cudnn</requirement>
6bec4fef6b2e "planemo upload for repository https://github.com/ohsu-comp-bio/unmicst commit 73e4cae15f2d7cdc86719e77470eb00af4b6ebb7-dirty"
perssond
parents:
diff changeset
11 <requirement type="package" version="10.0">cudatoolkit</requirement>
6bec4fef6b2e "planemo upload for repository https://github.com/ohsu-comp-bio/unmicst commit 73e4cae15f2d7cdc86719e77470eb00af4b6ebb7-dirty"
perssond
parents:
diff changeset
12 <requirement type="package" version="0.17.2">scikit-image</requirement>
6bec4fef6b2e "planemo upload for repository https://github.com/ohsu-comp-bio/unmicst commit 73e4cae15f2d7cdc86719e77470eb00af4b6ebb7-dirty"
perssond
parents:
diff changeset
13 <requirement type="package" version="1.4.1">scipy</requirement>
6bec4fef6b2e "planemo upload for repository https://github.com/ohsu-comp-bio/unmicst commit 73e4cae15f2d7cdc86719e77470eb00af4b6ebb7-dirty"
perssond
parents:
diff changeset
14 <requirement type="package" version="2020.7.24">tifffile</requirement>
6bec4fef6b2e "planemo upload for repository https://github.com/ohsu-comp-bio/unmicst commit 73e4cae15f2d7cdc86719e77470eb00af4b6ebb7-dirty"
perssond
parents:
diff changeset
15 <requirement type="package" version="2019.7.2">czifile</requirement>
6bec4fef6b2e "planemo upload for repository https://github.com/ohsu-comp-bio/unmicst commit 73e4cae15f2d7cdc86719e77470eb00af4b6ebb7-dirty"
perssond
parents:
diff changeset
16 <requirement type="package" version="3.2.3">nd2reader</requirement>
1
74fe58ff55a5 planemo upload for repository https://github.com/HMS-IDAC/UnMicst commit e14f76a8803cab0013c6dbe809bc81d7667f2ab9
goeckslab
parents: 0
diff changeset
17 -->
0
6bec4fef6b2e "planemo upload for repository https://github.com/ohsu-comp-bio/unmicst commit 73e4cae15f2d7cdc86719e77470eb00af4b6ebb7-dirty"
perssond
parents:
diff changeset
18 </requirements>
6bec4fef6b2e "planemo upload for repository https://github.com/ohsu-comp-bio/unmicst commit 73e4cae15f2d7cdc86719e77470eb00af4b6ebb7-dirty"
perssond
parents:
diff changeset
19 </xml>
6bec4fef6b2e "planemo upload for repository https://github.com/ohsu-comp-bio/unmicst commit 73e4cae15f2d7cdc86719e77470eb00af4b6ebb7-dirty"
perssond
parents:
diff changeset
20
6bec4fef6b2e "planemo upload for repository https://github.com/ohsu-comp-bio/unmicst commit 73e4cae15f2d7cdc86719e77470eb00af4b6ebb7-dirty"
perssond
parents:
diff changeset
21 <xml name="version_cmd">
1
74fe58ff55a5 planemo upload for repository https://github.com/HMS-IDAC/UnMicst commit e14f76a8803cab0013c6dbe809bc81d7667f2ab9
goeckslab
parents: 0
diff changeset
22 <version_command>@CMD_BEGIN@ --help</version_command>
0
6bec4fef6b2e "planemo upload for repository https://github.com/ohsu-comp-bio/unmicst commit 73e4cae15f2d7cdc86719e77470eb00af4b6ebb7-dirty"
perssond
parents:
diff changeset
23 </xml>
6bec4fef6b2e "planemo upload for repository https://github.com/ohsu-comp-bio/unmicst commit 73e4cae15f2d7cdc86719e77470eb00af4b6ebb7-dirty"
perssond
parents:
diff changeset
24 <xml name="citations">
6bec4fef6b2e "planemo upload for repository https://github.com/ohsu-comp-bio/unmicst commit 73e4cae15f2d7cdc86719e77470eb00af4b6ebb7-dirty"
perssond
parents:
diff changeset
25 <citations>
1
74fe58ff55a5 planemo upload for repository https://github.com/HMS-IDAC/UnMicst commit e14f76a8803cab0013c6dbe809bc81d7667f2ab9
goeckslab
parents: 0
diff changeset
26 <citation type="doi">10.1101/2021.04.02.438285</citation>
0
6bec4fef6b2e "planemo upload for repository https://github.com/ohsu-comp-bio/unmicst commit 73e4cae15f2d7cdc86719e77470eb00af4b6ebb7-dirty"
perssond
parents:
diff changeset
27 </citations>
6bec4fef6b2e "planemo upload for repository https://github.com/ohsu-comp-bio/unmicst commit 73e4cae15f2d7cdc86719e77470eb00af4b6ebb7-dirty"
perssond
parents:
diff changeset
28 </xml>
6bec4fef6b2e "planemo upload for repository https://github.com/ohsu-comp-bio/unmicst commit 73e4cae15f2d7cdc86719e77470eb00af4b6ebb7-dirty"
perssond
parents:
diff changeset
29
1
74fe58ff55a5 planemo upload for repository https://github.com/HMS-IDAC/UnMicst commit e14f76a8803cab0013c6dbe809bc81d7667f2ab9
goeckslab
parents: 0
diff changeset
30 <token name="@TOOL_VERSION@">2.7.1</token>
74fe58ff55a5 planemo upload for repository https://github.com/HMS-IDAC/UnMicst commit e14f76a8803cab0013c6dbe809bc81d7667f2ab9
goeckslab
parents: 0
diff changeset
31 <token name="@VERSION_SUFFIX@">0</token>
74fe58ff55a5 planemo upload for repository https://github.com/HMS-IDAC/UnMicst commit e14f76a8803cab0013c6dbe809bc81d7667f2ab9
goeckslab
parents: 0
diff changeset
32 <token name="@CMD_BEGIN@"><![CDATA[
74fe58ff55a5 planemo upload for repository https://github.com/HMS-IDAC/UnMicst commit e14f76a8803cab0013c6dbe809bc81d7667f2ab9
goeckslab
parents: 0
diff changeset
33 UNMICST_PATH='' &&
74fe58ff55a5 planemo upload for repository https://github.com/HMS-IDAC/UnMicst commit e14f76a8803cab0013c6dbe809bc81d7667f2ab9
goeckslab
parents: 0
diff changeset
34 if [ -f '/app/unmicstWrapper.py' ]; then
74fe58ff55a5 planemo upload for repository https://github.com/HMS-IDAC/UnMicst commit e14f76a8803cab0013c6dbe809bc81d7667f2ab9
goeckslab
parents: 0
diff changeset
35 export UNMICST_PATH='python /app/unmicstWrapper.py';
74fe58ff55a5 planemo upload for repository https://github.com/HMS-IDAC/UnMicst commit e14f76a8803cab0013c6dbe809bc81d7667f2ab9
goeckslab
parents: 0
diff changeset
36 else
74fe58ff55a5 planemo upload for repository https://github.com/HMS-IDAC/UnMicst commit e14f76a8803cab0013c6dbe809bc81d7667f2ab9
goeckslab
parents: 0
diff changeset
37 export UNMICST_PATH='unmicstWrapper.py';
74fe58ff55a5 planemo upload for repository https://github.com/HMS-IDAC/UnMicst commit e14f76a8803cab0013c6dbe809bc81d7667f2ab9
goeckslab
parents: 0
diff changeset
38 fi &&
74fe58ff55a5 planemo upload for repository https://github.com/HMS-IDAC/UnMicst commit e14f76a8803cab0013c6dbe809bc81d7667f2ab9
goeckslab
parents: 0
diff changeset
39 \$UNMICST_PATH
74fe58ff55a5 planemo upload for repository https://github.com/HMS-IDAC/UnMicst commit e14f76a8803cab0013c6dbe809bc81d7667f2ab9
goeckslab
parents: 0
diff changeset
40 ]]></token>
0
6bec4fef6b2e "planemo upload for repository https://github.com/ohsu-comp-bio/unmicst commit 73e4cae15f2d7cdc86719e77470eb00af4b6ebb7-dirty"
perssond
parents:
diff changeset
41 </macros>