<?xml version="1.0"?>
<macros>
    <xml name="requirements">
        <requirements>
            <container type="docker">labsyspharm/unmicst:@TOOL_VERSION@</container>
            <!--
            <requirement type="package" version="3.7">python</requirement>
            <requirement type="package" version="1.15.0">tensorflow</requirement>
            <requirement type="package" version="1.15.1">tensorflow-estimator</requirement>
            <requirement type="package">cudnn</requirement>
            <requirement type="package" version="10.0">cudatoolkit</requirement>
            <requirement type="package" version="0.17.2">scikit-image</requirement>
            <requirement type="package" version="1.4.1">scipy</requirement>
            <requirement type="package" version="2020.7.24">tifffile</requirement>
            <requirement type="package" version="2019.7.2">czifile</requirement>
            <requirement type="package" version="3.2.3">nd2reader</requirement>
            -->
        </requirements>
    </xml>

    <xml name="version_cmd">
        <version_command>@CMD_BEGIN@ --help</version_command> 
    </xml>
    <xml name="citations">
        <citations>
            <citation type="doi">10.1101/2021.04.02.438285</citation>
        </citations>
    </xml>

    <token name="@TOOL_VERSION@">2.7.1</token>
    <token name="@VERSION_SUFFIX@">0</token>
    <token name="@CMD_BEGIN@"><![CDATA[
    UNMICST_PATH='' &&
    if [ -f '/app/unmicstWrapper.py' ]; then
        export UNMICST_PATH='python /app/unmicstWrapper.py';
    else
        export UNMICST_PATH='unmicstWrapper.py';
    fi &&
    \$UNMICST_PATH
    ]]></token>
</macros>