Mercurial > repos > peterjc > blast2go

annotate tool-data/blast2go.loc.sample @ 7:0ac3ef59ea93 draft

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Uploaded v0.0.8 with ToolShed neutral BLAST datatype dependency
author peterjc
date Mon, 23 Sep 2013 05:53:37 -0400
parents 872cf247c899
children
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e88a3246520e Uploaded v0.0.3 which adds tool-data/blast2go.loc.sample example settings file
peterjc
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1 # This is a three column tab separated file to define the properties
e88a3246520e Uploaded v0.0.3 which adds tool-data/blast2go.loc.sample example settings file
peterjc
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2 # file (settings) to be offered for Blast2GO for Pipelines (b2g4pipe).
e88a3246520e Uploaded v0.0.3 which adds tool-data/blast2go.loc.sample example settings file
peterjc
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3 #
e88a3246520e Uploaded v0.0.3 which adds tool-data/blast2go.loc.sample example settings file
peterjc
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4 # Column 1 - ID, string that Galaxy will save in its database
e88a3246520e Uploaded v0.0.3 which adds tool-data/blast2go.loc.sample example settings file
peterjc
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5 # Column 2 - Human readable name, Galaxy will show this in the UI
e88a3246520e Uploaded v0.0.3 which adds tool-data/blast2go.loc.sample example settings file
peterjc
parents:
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6 # Column 3 - Filename, Galaxy will use this when calling the tool
e88a3246520e Uploaded v0.0.3 which adds tool-data/blast2go.loc.sample example settings file
peterjc
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7 #
e88a3246520e Uploaded v0.0.3 which adds tool-data/blast2go.loc.sample example settings file
peterjc
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8 # Probably the most important setting in the properties file is the
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872cf247c899 Uploaded v0.0.8, auto-installation, RST README, MIT licence, citation information, development moved to GitHub, split out XML formatter into standalone script
peterjc
parents: 5
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9 # Blast2GO database to use. Currently b2g4pipe v2.5 ships with an
872cf247c899 Uploaded v0.0.8, auto-installation, RST README, MIT licence, citation information, development moved to GitHub, split out XML formatter into standalone script
peterjc
parents: 5
diff changeset
10 # old configuration so consult http://www.blast2go.com for the latest
872cf247c899 Uploaded v0.0.8, auto-installation, RST README, MIT licence, citation information, development moved to GitHub, split out XML formatter into standalone script
peterjc
parents: 5
diff changeset
11 # public database they host in Spain (or find this by running the GUI
872cf247c899 Uploaded v0.0.8, auto-installation, RST README, MIT licence, citation information, development moved to GitHub, split out XML formatter into standalone script
peterjc
parents: 5
diff changeset
12 # version of Blast2GO via Java Web Start under the menu entry "Tools",
872cf247c899 Uploaded v0.0.8, auto-installation, RST README, MIT licence, citation information, development moved to GitHub, split out XML formatter into standalone script
peterjc
parents: 5
diff changeset
13 # "General Settings", "DataAccess setting"). We also strongly recommend
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e88a3246520e Uploaded v0.0.3 which adds tool-data/blast2go.loc.sample example settings file
peterjc
parents:
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14 # configuring a local Blast2GO database.
e88a3246520e Uploaded v0.0.3 which adds tool-data/blast2go.loc.sample example settings file
peterjc
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15 #
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872cf247c899 Uploaded v0.0.8, auto-installation, RST README, MIT licence, citation information, development moved to GitHub, split out XML formatter into standalone script
peterjc
parents: 5
diff changeset
16 # The property filenames can be fully qualified paths like
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e4419efbefad Uploaded v0.0.6 of wrapper, which now supports b2g4pipe v2.5 (and no longer works with b2g4pipe v2.3.5). See manual install instructions!
peterjc
parents: 3
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17 # /opt/b2g4pipe/Spain_2012_August.properties or provided they are
e4419efbefad Uploaded v0.0.6 of wrapper, which now supports b2g4pipe v2.5 (and no longer works with b2g4pipe v2.3.5). See manual install instructions!
peterjc
parents: 3
diff changeset
18 # in the same folder as the Blast2GO JAR file, just the filename
e4419efbefad Uploaded v0.0.6 of wrapper, which now supports b2g4pipe v2.5 (and no longer works with b2g4pipe v2.3.5). See manual install instructions!
peterjc
parents: 3
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19 # like Spain_2012_August.properties instead. This is intended to
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872cf247c899 Uploaded v0.0.8, auto-installation, RST README, MIT licence, citation information, development moved to GitHub, split out XML formatter into standalone script
peterjc
parents: 5
diff changeset
20 # make migrating between future versions of Blast2GO easier (as the
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e4419efbefad Uploaded v0.0.6 of wrapper, which now supports b2g4pipe v2.5 (and no longer works with b2g4pipe v2.3.5). See manual install instructions!
peterjc
parents: 3
diff changeset
21 # property files change between versions), and simpler overall.
e4419efbefad Uploaded v0.0.6 of wrapper, which now supports b2g4pipe v2.5 (and no longer works with b2g4pipe v2.3.5). See manual install instructions!
peterjc
parents: 3
diff changeset
22 #
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872cf247c899 Uploaded v0.0.8, auto-installation, RST README, MIT licence, citation information, development moved to GitHub, split out XML formatter into standalone script
peterjc
parents: 5
diff changeset
23 #Local_2011_May Local database (May 2011) Local_2011_May.properties
872cf247c899 Uploaded v0.0.8, auto-installation, RST README, MIT licence, citation information, development moved to GitHub, split out XML formatter into standalone script
peterjc
parents: 5
diff changeset
24 #Spain_2010_May Database in Spain (May 2010) Spain_2010_May.properties
872cf247c899 Uploaded v0.0.8, auto-installation, RST README, MIT licence, citation information, development moved to GitHub, split out XML formatter into standalone script
peterjc
parents: 5
diff changeset
25 Spain_2012_August Database in Spain (August 2012) Spain_2012_August.properties
5
e4419efbefad Uploaded v0.0.6 of wrapper, which now supports b2g4pipe v2.5 (and no longer works with b2g4pipe v2.3.5). See manual install instructions!
peterjc
parents: 3
diff changeset
26 Spain_2011_June Database in Spain (June 2011) Spain_2011_June.properties
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872cf247c899 Uploaded v0.0.8, auto-installation, RST README, MIT licence, citation information, development moved to GitHub, split out XML formatter into standalone script
peterjc
parents: 5
diff changeset
27 #default Default settings b2gPipe.properties