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annotate tool-data/blast2go.loc.sample @ 5:e4419efbefad draft

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Uploaded v0.0.6 of wrapper, which now supports b2g4pipe v2.5 (and no longer works with b2g4pipe v2.3.5). See manual install instructions!
author peterjc
date Fri, 22 Feb 2013 08:47:27 -0500
parents a5594772282c
children 872cf247c899
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e88a3246520e Uploaded v0.0.3 which adds tool-data/blast2go.loc.sample example settings file
peterjc
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1 # This is a three column tab separated file to define the properties
e88a3246520e Uploaded v0.0.3 which adds tool-data/blast2go.loc.sample example settings file
peterjc
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2 # file (settings) to be offered for Blast2GO for Pipelines (b2g4pipe).
e88a3246520e Uploaded v0.0.3 which adds tool-data/blast2go.loc.sample example settings file
peterjc
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3 #
e88a3246520e Uploaded v0.0.3 which adds tool-data/blast2go.loc.sample example settings file
peterjc
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4 # Column 1 - ID, string that Galaxy will save in its database
e88a3246520e Uploaded v0.0.3 which adds tool-data/blast2go.loc.sample example settings file
peterjc
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5 # Column 2 - Human readable name, Galaxy will show this in the UI
e88a3246520e Uploaded v0.0.3 which adds tool-data/blast2go.loc.sample example settings file
peterjc
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6 # Column 3 - Filename, Galaxy will use this when calling the tool
e88a3246520e Uploaded v0.0.3 which adds tool-data/blast2go.loc.sample example settings file
peterjc
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7 #
e88a3246520e Uploaded v0.0.3 which adds tool-data/blast2go.loc.sample example settings file
peterjc
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8 # Probably the most important setting in the properties file is the
e88a3246520e Uploaded v0.0.3 which adds tool-data/blast2go.loc.sample example settings file
peterjc
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9 # Blast2GO database to use. Currently b2g4pipe v2.3.5 ships with an
e88a3246520e Uploaded v0.0.3 which adds tool-data/blast2go.loc.sample example settings file
peterjc
parents:
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10 # old configuration so consult http://blast2go.org for the latest
e88a3246520e Uploaded v0.0.3 which adds tool-data/blast2go.loc.sample example settings file
peterjc
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11 # public database they host in Spain. We also strongly recommend
e88a3246520e Uploaded v0.0.3 which adds tool-data/blast2go.loc.sample example settings file
peterjc
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12 # configuring a local Blast2GO database.
e88a3246520e Uploaded v0.0.3 which adds tool-data/blast2go.loc.sample example settings file
peterjc
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13 #
5
e4419efbefad Uploaded v0.0.6 of wrapper, which now supports b2g4pipe v2.5 (and no longer works with b2g4pipe v2.3.5). See manual install instructions!
peterjc
parents: 3
diff changeset
14 # The property filenames can be fullied qualified paths like
e4419efbefad Uploaded v0.0.6 of wrapper, which now supports b2g4pipe v2.5 (and no longer works with b2g4pipe v2.3.5). See manual install instructions!
peterjc
parents: 3
diff changeset
15 # /opt/b2g4pipe/Spain_2012_August.properties or provided they are
e4419efbefad Uploaded v0.0.6 of wrapper, which now supports b2g4pipe v2.5 (and no longer works with b2g4pipe v2.3.5). See manual install instructions!
peterjc
parents: 3
diff changeset
16 # in the same folder as the Blast2GO JAR file, just the filename
e4419efbefad Uploaded v0.0.6 of wrapper, which now supports b2g4pipe v2.5 (and no longer works with b2g4pipe v2.3.5). See manual install instructions!
peterjc
parents: 3
diff changeset
17 # like Spain_2012_August.properties instead. This is intended to
e4419efbefad Uploaded v0.0.6 of wrapper, which now supports b2g4pipe v2.5 (and no longer works with b2g4pipe v2.3.5). See manual install instructions!
peterjc
parents: 3
diff changeset
18 # make migrating between versions of Blast2GO easier (as the
e4419efbefad Uploaded v0.0.6 of wrapper, which now supports b2g4pipe v2.5 (and no longer works with b2g4pipe v2.3.5). See manual install instructions!
peterjc
parents: 3
diff changeset
19 # property files change between versions), and simpler overall.
e4419efbefad Uploaded v0.0.6 of wrapper, which now supports b2g4pipe v2.5 (and no longer works with b2g4pipe v2.3.5). See manual install instructions!
peterjc
parents: 3
diff changeset
20 #
e4419efbefad Uploaded v0.0.6 of wrapper, which now supports b2g4pipe v2.5 (and no longer works with b2g4pipe v2.3.5). See manual install instructions!
peterjc
parents: 3
diff changeset
21 Local_2011_May Local database (May 2011) Local_2011_May.properties
e4419efbefad Uploaded v0.0.6 of wrapper, which now supports b2g4pipe v2.5 (and no longer works with b2g4pipe v2.3.5). See manual install instructions!
peterjc
parents: 3
diff changeset
22 Spain_2010_May Database in Spain (May 2010) Spain_2010_May.properties
e4419efbefad Uploaded v0.0.6 of wrapper, which now supports b2g4pipe v2.5 (and no longer works with b2g4pipe v2.3.5). See manual install instructions!
peterjc
parents: 3
diff changeset
23 Spain_2011_June Database in Spain (June 2011) Spain_2011_June.properties
e4419efbefad Uploaded v0.0.6 of wrapper, which now supports b2g4pipe v2.5 (and no longer works with b2g4pipe v2.3.5). See manual install instructions!
peterjc
parents: 3
diff changeset
24 Spain_2012_August Database in Spain (August 2012) Spain_2012_August.properties