Mercurial > repos > peterjc > blastxml_to_top_descr

annotate test-data/blastp_four_human_vs_rhodopsin.xml @ 4:34a0adda2770 draft

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Uploaded v0.0.3 which includes the test files required for the unit tests.
author peterjc
date Wed, 20 Feb 2013 13:18:07 -0500
parents
children 98f8431dab44
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34a0adda2770 Uploaded v0.0.3 which includes the test files required for the unit tests.
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1 <?xml version="1.0"?>
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2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
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3 <BlastOutput>
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4 <BlastOutput_program>blastp</BlastOutput_program>
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5 <BlastOutput_version>BLASTP 2.2.26+</BlastOutput_version>
34a0adda2770 Uploaded v0.0.3 which includes the test files required for the unit tests.
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6 <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&amp;auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), &quot;Gapped BLAST and PSI-BLAST: a new generation of protein database search programs&quot;, Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference>
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7 <BlastOutput_db></BlastOutput_db>
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8 <BlastOutput_query-ID>sp|Q9BS26|ERP44_HUMAN</BlastOutput_query-ID>
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9 <BlastOutput_query-def>Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</BlastOutput_query-def>
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10 <BlastOutput_query-len>406</BlastOutput_query-len>
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11 <BlastOutput_param>
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12 <Parameters>
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13 <Parameters_matrix>BLOSUM62</Parameters_matrix>
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14 <Parameters_expect>1e-08</Parameters_expect>
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15 <Parameters_gap-open>11</Parameters_gap-open>
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16 <Parameters_gap-extend>1</Parameters_gap-extend>
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17 <Parameters_filter>F</Parameters_filter>
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18 </Parameters>
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19 </BlastOutput_param>
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20 <BlastOutput_iterations>
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21 <Iteration>
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22 <Iteration_iter-num>1</Iteration_iter-num>
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23 <Iteration_query-ID>sp|Q9BS26|ERP44_HUMAN</Iteration_query-ID>
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24 <Iteration_query-def>Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def>
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25 <Iteration_query-len>406</Iteration_query-len>
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26 <Iteration_hits></Iteration_hits>
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27 <Iteration_stat>
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28 <Statistics>
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29 <Statistics_db-num>0</Statistics_db-num>
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30 <Statistics_db-len>0</Statistics_db-len>
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31 <Statistics_hsp-len>30</Statistics_hsp-len>
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32 <Statistics_eff-space>119568</Statistics_eff-space>
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33 <Statistics_kappa>0.041</Statistics_kappa>
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34 <Statistics_lambda>0.267</Statistics_lambda>
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35 <Statistics_entropy>0.14</Statistics_entropy>
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36 </Statistics>
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37 </Iteration_stat>
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38 <Iteration_message>No hits found</Iteration_message>
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39 </Iteration>
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40 <Iteration>
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41 <Iteration_iter-num>2</Iteration_iter-num>
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42 <Iteration_query-ID>sp|Q9BS26|ERP44_HUMAN</Iteration_query-ID>
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43 <Iteration_query-def>Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def>
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44 <Iteration_query-len>406</Iteration_query-len>
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45 <Iteration_hits></Iteration_hits>
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46 <Iteration_stat>
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47 <Statistics>
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48 <Statistics_db-num>0</Statistics_db-num>
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49 <Statistics_db-len>0</Statistics_db-len>
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50 <Statistics_hsp-len>30</Statistics_hsp-len>
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51 <Statistics_eff-space>119568</Statistics_eff-space>
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52 <Statistics_kappa>0.041</Statistics_kappa>
34a0adda2770 Uploaded v0.0.3 which includes the test files required for the unit tests.
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53 <Statistics_lambda>0.267</Statistics_lambda>
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54 <Statistics_entropy>0.14</Statistics_entropy>
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55 </Statistics>
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56 </Iteration_stat>
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57 <Iteration_message>No hits found</Iteration_message>
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58 </Iteration>
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59 <Iteration>
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60 <Iteration_iter-num>3</Iteration_iter-num>
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61 <Iteration_query-ID>sp|Q9BS26|ERP44_HUMAN</Iteration_query-ID>
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62 <Iteration_query-def>Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def>
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63 <Iteration_query-len>406</Iteration_query-len>
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64 <Iteration_hits></Iteration_hits>
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65 <Iteration_stat>
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66 <Statistics>
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67 <Statistics_db-num>0</Statistics_db-num>
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68 <Statistics_db-len>0</Statistics_db-len>
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69 <Statistics_hsp-len>30</Statistics_hsp-len>
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70 <Statistics_eff-space>119568</Statistics_eff-space>
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71 <Statistics_kappa>0.041</Statistics_kappa>
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72 <Statistics_lambda>0.267</Statistics_lambda>
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73 <Statistics_entropy>0.14</Statistics_entropy>
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74 </Statistics>
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75 </Iteration_stat>
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76 <Iteration_message>No hits found</Iteration_message>
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77 </Iteration>
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78 <Iteration>
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79 <Iteration_iter-num>4</Iteration_iter-num>
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80 <Iteration_query-ID>sp|Q9BS26|ERP44_HUMAN</Iteration_query-ID>
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81 <Iteration_query-def>Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def>
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82 <Iteration_query-len>406</Iteration_query-len>
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83 <Iteration_hits></Iteration_hits>
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84 <Iteration_stat>
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85 <Statistics>
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86 <Statistics_db-num>0</Statistics_db-num>
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87 <Statistics_db-len>0</Statistics_db-len>
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88 <Statistics_hsp-len>30</Statistics_hsp-len>
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89 <Statistics_eff-space>119568</Statistics_eff-space>
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90 <Statistics_kappa>0.041</Statistics_kappa>
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91 <Statistics_lambda>0.267</Statistics_lambda>
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92 <Statistics_entropy>0.14</Statistics_entropy>
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93 </Statistics>
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94 </Iteration_stat>
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95 <Iteration_message>No hits found</Iteration_message>
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96 </Iteration>
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97 <Iteration>
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98 <Iteration_iter-num>5</Iteration_iter-num>
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99 <Iteration_query-ID>sp|Q9BS26|ERP44_HUMAN</Iteration_query-ID>
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100 <Iteration_query-def>Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def>
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101 <Iteration_query-len>406</Iteration_query-len>
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102 <Iteration_hits></Iteration_hits>
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103 <Iteration_stat>
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104 <Statistics>
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107 <Statistics_hsp-len>30</Statistics_hsp-len>
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108 <Statistics_eff-space>119568</Statistics_eff-space>
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109 <Statistics_kappa>0.041</Statistics_kappa>
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112 </Statistics>
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113 </Iteration_stat>
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114 <Iteration_message>No hits found</Iteration_message>
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115 </Iteration>
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116 <Iteration>
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117 <Iteration_iter-num>6</Iteration_iter-num>
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118 <Iteration_query-ID>sp|Q9BS26|ERP44_HUMAN</Iteration_query-ID>
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119 <Iteration_query-def>Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def>
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121 <Iteration_hits></Iteration_hits>
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122 <Iteration_stat>
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123 <Statistics>
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126 <Statistics_hsp-len>30</Statistics_hsp-len>
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127 <Statistics_eff-space>119568</Statistics_eff-space>
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128 <Statistics_kappa>0.041</Statistics_kappa>
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129 <Statistics_lambda>0.267</Statistics_lambda>
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130 <Statistics_entropy>0.14</Statistics_entropy>
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131 </Statistics>
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627 <Hsp_hseq>MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDGASATSSKTE</Hsp_hseq>
34a0adda2770 Uploaded v0.0.3 which includes the test files required for the unit tests.
peterjc
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628 <Hsp_midline>MNGTEGPNFY+P SNATGVVRSPFEYPQYYLAEPW FS L+AYMF LI+ GFPINFLTLYVT++HKKLRTPLNYILLNLAVADLFMV GGFT+T+YTS+HGYFVFGPTGCN+EGFFATLGGEIALW LVVLAIER++VVCKP++NFRFGE+HAIMGV TW MALACA PPL GWSRYIPEGLQCSCGIDYYT P +NNESFVIYMF HF+IP+ +I FCYG+LV TVKEAAAQQQES TTQ+AE+EVTRMV+IMVI+FL+CWVPYASVA+YIFTHQGS FGPIFMTIP+FFAKS+A+YNP+IYI MNKQFR+CM+TT+CCGKNP +D ASAT SKTE</Hsp_midline>
34a0adda2770 Uploaded v0.0.3 which includes the test files required for the unit tests.
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629 </Hsp>
34a0adda2770 Uploaded v0.0.3 which includes the test files required for the unit tests.
peterjc
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630 </Hit_hsps>
34a0adda2770 Uploaded v0.0.3 which includes the test files required for the unit tests.
peterjc
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631 </Hit>
34a0adda2770 Uploaded v0.0.3 which includes the test files required for the unit tests.
peterjc
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632 </Iteration_hits>
34a0adda2770 Uploaded v0.0.3 which includes the test files required for the unit tests.
peterjc
parents:
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633 <Iteration_stat>
34a0adda2770 Uploaded v0.0.3 which includes the test files required for the unit tests.
peterjc
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634 <Statistics>
34a0adda2770 Uploaded v0.0.3 which includes the test files required for the unit tests.
peterjc
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635 <Statistics_db-num>0</Statistics_db-num>
34a0adda2770 Uploaded v0.0.3 which includes the test files required for the unit tests.
peterjc
parents:
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636 <Statistics_db-len>0</Statistics_db-len>
34a0adda2770 Uploaded v0.0.3 which includes the test files required for the unit tests.
peterjc
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637 <Statistics_hsp-len>29</Statistics_hsp-len>
34a0adda2770 Uploaded v0.0.3 which includes the test files required for the unit tests.
peterjc
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638 <Statistics_eff-space>101761</Statistics_eff-space>
34a0adda2770 Uploaded v0.0.3 which includes the test files required for the unit tests.
peterjc
parents:
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639 <Statistics_kappa>0.041</Statistics_kappa>
34a0adda2770 Uploaded v0.0.3 which includes the test files required for the unit tests.
peterjc
parents:
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640 <Statistics_lambda>0.267</Statistics_lambda>
34a0adda2770 Uploaded v0.0.3 which includes the test files required for the unit tests.
peterjc
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641 <Statistics_entropy>0.14</Statistics_entropy>
34a0adda2770 Uploaded v0.0.3 which includes the test files required for the unit tests.
peterjc
parents:
diff changeset
642 </Statistics>
34a0adda2770 Uploaded v0.0.3 which includes the test files required for the unit tests.
peterjc
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643 </Iteration_stat>
34a0adda2770 Uploaded v0.0.3 which includes the test files required for the unit tests.
peterjc
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644 </Iteration>
34a0adda2770 Uploaded v0.0.3 which includes the test files required for the unit tests.
peterjc
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645 </BlastOutput_iterations>
34a0adda2770 Uploaded v0.0.3 which includes the test files required for the unit tests.
peterjc
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646 </BlastOutput>