Mercurial > repos > peterjc > blastxml_to_top_descr

annotate test-data/blastp_four_human_vs_rhodopsin.xml @ 13:8dc4ba7eba5d draft default tip

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v0.1.2 with Python 3.9 declaration
author peterjc
date Sun, 17 Sep 2023 13:01:56 +0000
parents 98f8431dab44
children
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1 <?xml version="1.0"?>
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2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
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3 <BlastOutput>
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4 <BlastOutput_program>blastp</BlastOutput_program>
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5 <BlastOutput_version>BLASTP 2.10.1+</BlastOutput_version>
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6 <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&amp;auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), &quot;Gapped BLAST and PSI-BLAST: a new generation of protein database search programs&quot;, Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference>
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7 <BlastOutput_db></BlastOutput_db>
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8 <BlastOutput_query-ID>Q9BS26</BlastOutput_query-ID>
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9 <BlastOutput_query-def>Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</BlastOutput_query-def>
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10 <BlastOutput_query-len>406</BlastOutput_query-len>
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11 <BlastOutput_param>
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12 <Parameters>
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13 <Parameters_matrix>BLOSUM62</Parameters_matrix>
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14 <Parameters_expect>1e-08</Parameters_expect>
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15 <Parameters_gap-open>11</Parameters_gap-open>
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16 <Parameters_gap-extend>1</Parameters_gap-extend>
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17 <Parameters_filter>F</Parameters_filter>
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18 </Parameters>
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19 </BlastOutput_param>
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20 <BlastOutput_iterations>
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21 <Iteration>
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22 <Iteration_iter-num>1</Iteration_iter-num>
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23 <Iteration_query-ID>Q9BS26</Iteration_query-ID>
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24 <Iteration_query-def>Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def>
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25 <Iteration_query-len>406</Iteration_query-len>
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26 <Iteration_hits>
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27 </Iteration_hits>
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28 <Iteration_stat>
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29 <Statistics>
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30 <Statistics_db-num>0</Statistics_db-num>
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31 <Statistics_db-len>0</Statistics_db-len>
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32 <Statistics_hsp-len>42</Statistics_hsp-len>
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33 <Statistics_eff-space>657748</Statistics_eff-space>
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34 <Statistics_kappa>0.041</Statistics_kappa>
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35 <Statistics_lambda>0.267</Statistics_lambda>
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36 <Statistics_entropy>0.14</Statistics_entropy>
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37 </Statistics>
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38 </Iteration_stat>
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39 <Iteration_message>No hits found</Iteration_message>
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40 </Iteration>
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41 <Iteration>
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42 <Iteration_iter-num>2</Iteration_iter-num>
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43 <Iteration_query-ID>Q9NSY1</Iteration_query-ID>
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44 <Iteration_query-def>BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def>
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45 <Iteration_query-len>1161</Iteration_query-len>
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46 <Iteration_hits>
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47 </Iteration_hits>
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48 <Iteration_stat>
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49 <Statistics>
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50 <Statistics_db-num>0</Statistics_db-num>
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51 <Statistics_db-len>0</Statistics_db-len>
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52 <Statistics_hsp-len>50</Statistics_hsp-len>
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53 <Statistics_eff-space>1954249</Statistics_eff-space>
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54 <Statistics_kappa>0.041</Statistics_kappa>
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55 <Statistics_lambda>0.267</Statistics_lambda>
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56 <Statistics_entropy>0.14</Statistics_entropy>
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57 </Statistics>
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58 </Iteration_stat>
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59 <Iteration_message>No hits found</Iteration_message>
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60 </Iteration>
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61 <Iteration>
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62 <Iteration_iter-num>3</Iteration_iter-num>
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63 <Iteration_query-ID>P06213</Iteration_query-ID>
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64 <Iteration_query-def>Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def>
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65 <Iteration_query-len>1382</Iteration_query-len>
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66 <Iteration_hits>
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67 </Iteration_hits>
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68 <Iteration_stat>
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69 <Statistics>
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70 <Statistics_db-num>0</Statistics_db-num>
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71 <Statistics_db-len>0</Statistics_db-len>
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72 <Statistics_hsp-len>51</Statistics_hsp-len>
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73 <Statistics_eff-space>2333243</Statistics_eff-space>
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74 <Statistics_kappa>0.041</Statistics_kappa>
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75 <Statistics_lambda>0.267</Statistics_lambda>
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76 <Statistics_entropy>0.14</Statistics_entropy>
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77 </Statistics>
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78 </Iteration_stat>
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79 <Iteration_message>No hits found</Iteration_message>
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80 </Iteration>
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81 <Iteration>
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82 <Iteration_iter-num>4</Iteration_iter-num>
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83 <Iteration_query-ID>P08100</Iteration_query-ID>
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84 <Iteration_query-def>Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def>
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85 <Iteration_query-len>348</Iteration_query-len>
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86 <Iteration_hits>
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87 <Hit>
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88 <Hit_num>1</Hit_num>
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89 <Hit_id>gi|57163783|ref|NP_001009242.1|</Hit_id>
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90 <Hit_def>rhodopsin [Felis catus]</Hit_def>
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91 <Hit_accession>NP_001009242</Hit_accession>
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92 <Hit_len>348</Hit_len>
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93 <Hit_hsps>
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94 <Hsp>
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95 <Hsp_num>1</Hsp_num>
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96 <Hsp_bit-score>701.049</Hsp_bit-score>
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97 <Hsp_score>1808</Hsp_score>
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98 <Hsp_evalue>0</Hsp_evalue>
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99 <Hsp_query-from>1</Hsp_query-from>
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100 <Hsp_query-to>348</Hsp_query-to>
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101 <Hsp_hit-from>1</Hsp_hit-from>
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102 <Hsp_hit-to>348</Hsp_hit-to>
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103 <Hsp_query-frame>0</Hsp_query-frame>
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104 <Hsp_hit-frame>0</Hsp_hit-frame>
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105 <Hsp_identity>336</Hsp_identity>
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106 <Hsp_positive>343</Hsp_positive>
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107 <Hsp_gaps>0</Hsp_gaps>
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108 <Hsp_align-len>348</Hsp_align-len>
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109 <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_qseq>
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110 <Hsp_hseq>MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA</Hsp_hseq>
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111 <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T SKTETSQVAPA</Hsp_midline>
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112 </Hsp>
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113 </Hit_hsps>
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114 </Hit>
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115 <Hit>
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116 <Hit_num>2</Hit_num>
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117 <Hit_id>gi|223523|prf||0811197A</Hit_id>
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118 <Hit_def>rhodopsin [Bos taurus]</Hit_def>
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119 <Hit_accession>0811197A</Hit_accession>
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120 <Hit_len>347</Hit_len>
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121 <Hit_hsps>
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122 <Hsp>
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123 <Hsp_num>1</Hsp_num>
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124 <Hsp_bit-score>673.315</Hsp_bit-score>
8dc4ba7eba5d v0.1.2 with Python 3.9 declaration
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parents: 11
diff changeset
125 <Hsp_score>1736</Hsp_score>
11
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
126 <Hsp_evalue>0</Hsp_evalue>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
127 <Hsp_query-from>1</Hsp_query-from>
13
8dc4ba7eba5d v0.1.2 with Python 3.9 declaration
peterjc
parents: 11
diff changeset
128 <Hsp_query-to>348</Hsp_query-to>
11
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
129 <Hsp_hit-from>1</Hsp_hit-from>
13
8dc4ba7eba5d v0.1.2 with Python 3.9 declaration
peterjc
parents: 11
diff changeset
130 <Hsp_hit-to>347</Hsp_hit-to>
11
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
131 <Hsp_query-frame>0</Hsp_query-frame>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
132 <Hsp_hit-frame>0</Hsp_hit-frame>
13
8dc4ba7eba5d v0.1.2 with Python 3.9 declaration
peterjc
parents: 11
diff changeset
133 <Hsp_identity>324</Hsp_identity>
8dc4ba7eba5d v0.1.2 with Python 3.9 declaration
peterjc
parents: 11
diff changeset
134 <Hsp_positive>336</Hsp_positive>
11
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
135 <Hsp_gaps>1</Hsp_gaps>
13
8dc4ba7eba5d v0.1.2 with Python 3.9 declaration
peterjc
parents: 11
diff changeset
136 <Hsp_align-len>348</Hsp_align-len>
8dc4ba7eba5d v0.1.2 with Python 3.9 declaration
peterjc
parents: 11
diff changeset
137 <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_qseq>
8dc4ba7eba5d v0.1.2 with Python 3.9 declaration
peterjc
parents: 11
diff changeset
138 <Hsp_hseq>MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGID-YTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA</Hsp_hseq>
8dc4ba7eba5d v0.1.2 with Python 3.9 declaration
peterjc
parents: 11
diff changeset
139 <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGID YT E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA</Hsp_midline>
11
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
140 </Hsp>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
141 </Hit_hsps>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
142 </Hit>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
143 <Hit>
13
8dc4ba7eba5d v0.1.2 with Python 3.9 declaration
peterjc
parents: 11
diff changeset
144 <Hit_num>3</Hit_num>
11
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
145 <Hit_id>gi|283855846|gb|ADB45242.1|</Hit_id>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
146 <Hit_def>rhodopsin [Cynopterus brachyotis]</Hit_def>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
147 <Hit_accession>ADB45242</Hit_accession>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
148 <Hit_len>328</Hit_len>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
149 <Hit_hsps>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
150 <Hsp>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
151 <Hsp_num>1</Hsp_num>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
152 <Hsp_bit-score>653.284</Hsp_bit-score>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
153 <Hsp_score>1684</Hsp_score>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
154 <Hsp_evalue>0</Hsp_evalue>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
155 <Hsp_query-from>11</Hsp_query-from>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
156 <Hsp_query-to>338</Hsp_query-to>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
157 <Hsp_hit-from>1</Hsp_hit-from>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
158 <Hsp_hit-to>328</Hsp_hit-to>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
159 <Hsp_query-frame>0</Hsp_query-frame>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
160 <Hsp_hit-frame>0</Hsp_hit-frame>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
161 <Hsp_identity>311</Hsp_identity>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
162 <Hsp_positive>321</Hsp_positive>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
163 <Hsp_gaps>0</Hsp_gaps>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
164 <Hsp_align-len>328</Hsp_align-len>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
165 <Hsp_qseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVS</Hsp_qseq>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
166 <Hsp_hseq>VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTAS</Hsp_hseq>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
167 <Hsp_midline>VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T S</Hsp_midline>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
168 </Hsp>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
169 </Hit_hsps>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
170 </Hit>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
171 <Hit>
13
8dc4ba7eba5d v0.1.2 with Python 3.9 declaration
peterjc
parents: 11
diff changeset
172 <Hit_num>4</Hit_num>
11
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
173 <Hit_id>gi|283855823|gb|ADB45229.1|</Hit_id>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
174 <Hit_def>rhodopsin [Myotis pilosus]</Hit_def>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
175 <Hit_accession>ADB45229</Hit_accession>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
176 <Hit_len>328</Hit_len>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
177 <Hit_hsps>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
178 <Hsp>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
179 <Hsp_num>1</Hsp_num>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
180 <Hsp_bit-score>631.328</Hsp_bit-score>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
181 <Hsp_score>1627</Hsp_score>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
182 <Hsp_evalue>0</Hsp_evalue>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
183 <Hsp_query-from>11</Hsp_query-from>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
184 <Hsp_query-to>338</Hsp_query-to>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
185 <Hsp_hit-from>1</Hsp_hit-from>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
186 <Hsp_hit-to>328</Hsp_hit-to>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
187 <Hsp_query-frame>0</Hsp_query-frame>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
188 <Hsp_hit-frame>0</Hsp_hit-frame>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
189 <Hsp_identity>311</Hsp_identity>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
190 <Hsp_positive>323</Hsp_positive>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
191 <Hsp_gaps>0</Hsp_gaps>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
192 <Hsp_align-len>328</Hsp_align-len>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
193 <Hsp_qseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVS</Hsp_qseq>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
194 <Hsp_hseq>VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTAS</Hsp_hseq>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
195 <Hsp_midline>VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVA+LFMV GGFT+TLYTS+HGYFVFG TGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+AFTWVMALACAAPPLAGWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMV+AFLICW+PYASVAFYIFTHQGSNFGP+FMTIPAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T S</Hsp_midline>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
196 </Hsp>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
197 </Hit_hsps>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
198 </Hit>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
199 <Hit>
13
8dc4ba7eba5d v0.1.2 with Python 3.9 declaration
peterjc
parents: 11
diff changeset
200 <Hit_num>5</Hit_num>
8dc4ba7eba5d v0.1.2 with Python 3.9 declaration
peterjc
parents: 11
diff changeset
201 <Hit_id>gi|3024260|sp|P56514.1|OPSD_BUFBU</Hit_id>
8dc4ba7eba5d v0.1.2 with Python 3.9 declaration
peterjc
parents: 11
diff changeset
202 <Hit_def>RecName: Full=Rhodopsin</Hit_def>
8dc4ba7eba5d v0.1.2 with Python 3.9 declaration
peterjc
parents: 11
diff changeset
203 <Hit_accession>P56514</Hit_accession>
8dc4ba7eba5d v0.1.2 with Python 3.9 declaration
peterjc
parents: 11
diff changeset
204 <Hit_len>354</Hit_len>
11
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
205 <Hit_hsps>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
206 <Hsp>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
207 <Hsp_num>1</Hsp_num>
13
8dc4ba7eba5d v0.1.2 with Python 3.9 declaration
peterjc
parents: 11
diff changeset
208 <Hsp_bit-score>619.002</Hsp_bit-score>
8dc4ba7eba5d v0.1.2 with Python 3.9 declaration
peterjc
parents: 11
diff changeset
209 <Hsp_score>1595</Hsp_score>
11
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
210 <Hsp_evalue>0</Hsp_evalue>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
211 <Hsp_query-from>1</Hsp_query-from>
13
8dc4ba7eba5d v0.1.2 with Python 3.9 declaration
peterjc
parents: 11
diff changeset
212 <Hsp_query-to>341</Hsp_query-to>
11
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
213 <Hsp_hit-from>1</Hsp_hit-from>
13
8dc4ba7eba5d v0.1.2 with Python 3.9 declaration
peterjc
parents: 11
diff changeset
214 <Hsp_hit-to>342</Hsp_hit-to>
11
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
215 <Hsp_query-frame>0</Hsp_query-frame>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
216 <Hsp_hit-frame>0</Hsp_hit-frame>
13
8dc4ba7eba5d v0.1.2 with Python 3.9 declaration
peterjc
parents: 11
diff changeset
217 <Hsp_identity>290</Hsp_identity>
8dc4ba7eba5d v0.1.2 with Python 3.9 declaration
peterjc
parents: 11
diff changeset
218 <Hsp_positive>322</Hsp_positive>
11
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
peterjc
parents: 4
diff changeset
219 <Hsp_gaps>1</Hsp_gaps>
13
8dc4ba7eba5d v0.1.2 with Python 3.9 declaration
peterjc
parents: 11
diff changeset
220 <Hsp_align-len>342</Hsp_align-len>
8dc4ba7eba5d v0.1.2 with Python 3.9 declaration
peterjc
parents: 11
diff changeset
221 <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA-SATVSKTE</Hsp_qseq>
8dc4ba7eba5d v0.1.2 with Python 3.9 declaration
peterjc
parents: 11
diff changeset
222 <Hsp_hseq>MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQESATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDDASSAATSKTE</Hsp_hseq>
8dc4ba7eba5d v0.1.2 with Python 3.9 declaration
peterjc
parents: 11
diff changeset
223 <Hsp_midline>MNGTEGPNFY+P SN TGVVRSPFEYPQYYLAEPWQ+S+L AYMFLLI+LGFPINF+TLYVT+QHKKLRTPLNYILLNLA A+ FMVL GFT T+Y+S++GYF+ G TGC +EGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF ENHA+MGVAFTW+MAL+CA PPL GWSRYIPEG+QCSCG+DYYTLKPEVNNESFVIYMFVVHFTIP+IIIFFCYG+LV TVKEAAAQQQESATTQKAEKEVTRMVIIMV+ FLICWVPYASVAF+IF++QGS FGPIFMT+PAFFAKS++IYNPVIYIM+NKQFRNCM+TT+CCGKNP G+D+A SA SKTE</Hsp_midline>
11
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224 </Hsp>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
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225 </Hit_hsps>
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226 </Hit>
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227 <Hit>
13
8dc4ba7eba5d v0.1.2 with Python 3.9 declaration
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228 <Hit_num>6</Hit_num>
11
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229 <Hit_id>gi|12583665|dbj|BAB21486.1|</Hit_id>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
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230 <Hit_def>fresh water form rod opsin [Conger myriaster]</Hit_def>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
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231 <Hit_accession>BAB21486</Hit_accession>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
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232 <Hit_len>354</Hit_len>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
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233 <Hit_hsps>
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234 <Hsp>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
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235 <Hsp_num>1</Hsp_num>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
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236 <Hsp_bit-score>599.356</Hsp_bit-score>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
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237 <Hsp_score>1544</Hsp_score>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
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parents: 4
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238 <Hsp_evalue>0</Hsp_evalue>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
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parents: 4
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239 <Hsp_query-from>1</Hsp_query-from>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
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parents: 4
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240 <Hsp_query-to>341</Hsp_query-to>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
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parents: 4
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241 <Hsp_hit-from>1</Hsp_hit-from>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
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parents: 4
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242 <Hsp_hit-to>342</Hsp_hit-to>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
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parents: 4
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243 <Hsp_query-frame>0</Hsp_query-frame>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
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parents: 4
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244 <Hsp_hit-frame>0</Hsp_hit-frame>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
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parents: 4
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245 <Hsp_identity>281</Hsp_identity>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
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246 <Hsp_positive>314</Hsp_positive>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
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247 <Hsp_gaps>1</Hsp_gaps>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
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248 <Hsp_align-len>342</Hsp_align-len>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
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parents: 4
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249 <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPL-GDDEASATVSKTE</Hsp_qseq>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
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parents: 4
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250 <Hsp_hseq>MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDGASATSSKTE</Hsp_hseq>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
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parents: 4
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251 <Hsp_midline>MNGTEGPNFY+P SNATGVVRSPFEYPQYYLAEPW FS L+AYMF LI+ GFPINFLTLYVT++HKKLRTPLNYILLNLAVADLFMV GGFT+T+YTS+HGYFVFGPTGCN+EGFFATLGGEIALW LVVLAIER++VVCKP++NFRFGE+HAIMGV TW MALACA PPL GWSRYIPEGLQCSCGIDYYT P +NNESFVIYMF HF+IP+ +I FCYG+LV TVKEAAAQQQES TTQ+AE+EVTRMV+IMVI+FL+CWVPYASVA+YIFTHQGS FGPIFMTIP+FFAKS+A+YNP+IYI MNKQFR+CM+TT+CCGKNP +D ASAT SKTE</Hsp_midline>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
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252 </Hsp>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
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253 </Hit_hsps>
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254 </Hit>
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255 </Iteration_hits>
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256 <Iteration_stat>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
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257 <Statistics>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
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258 <Statistics_db-num>0</Statistics_db-num>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
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259 <Statistics_db-len>0</Statistics_db-len>
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8dc4ba7eba5d v0.1.2 with Python 3.9 declaration
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260 <Statistics_hsp-len>41</Statistics_hsp-len>
8dc4ba7eba5d v0.1.2 with Python 3.9 declaration
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261 <Statistics_eff-space>556591</Statistics_eff-space>
11
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262 <Statistics_kappa>0.041</Statistics_kappa>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
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263 <Statistics_lambda>0.267</Statistics_lambda>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
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264 <Statistics_entropy>0.14</Statistics_entropy>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
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265 </Statistics>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
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266 </Iteration_stat>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
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267 </Iteration>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
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268 </BlastOutput_iterations>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
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269 </BlastOutput>
98f8431dab44 Uploaded v0.1.0, now also handles extended tabular BLAST output.
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270