Mercurial > repos > peterjc > blastxml_to_top_descr

comparison tools/ncbi_blast_plus/blastxml_to_top_descr.xml @ 5:662fea0fe6b2 draft

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Uploaded v0.0.4, quotes filenames in case the contain spaces
author peterjc
date Wed, 20 Feb 2013 13:36:37 -0500
parents 075fe5424c32
children 8a0771c5e236
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4:34a0adda2770 5:662fea0fe6b2
1 <tool id="blastxml_to_top_descr" name="BLAST top hit descriptions" version="0.0.1"> 1 <tool id="blastxml_to_top_descr" name="BLAST top hit descriptions" version="0.0.4">
2 <description>Make a table from BLAST XML</description> 2 <description>Make a table from BLAST XML</description>
3 <command interpreter="python"> 3 <command interpreter="python">
4 blastxml_to_top_descr.py $blastxml_file $tabular_file $topN 4 blastxml_to_top_descr.py "${blastxml_file}" "${tabular_file}" ${topN}
5 </command> 5 </command>
6 <inputs> 6 <inputs>
7 <param name="blastxml_file" type="data" format="blastxml" label="BLAST results as XML"/> 7 <param name="blastxml_file" type="data" format="blastxml" label="BLAST results as XML"/>
8 <param name="topN" type="integer" min="1" max="100" optional="false" label="Number of descriptions" value="3"/> 8 <param name="topN" type="integer" min="1" max="100" optional="false" label="Number of descriptions" value="3"/>
9 </inputs> 9 </inputs>