Mercurial > repos > peterjc > blastxml_to_top_descr

diff tools/ncbi_blast_plus/blastxml_to_top_descr.xml @ 5:662fea0fe6b2 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded v0.0.4, quotes filenames in case the contain spaces
author peterjc
date Wed, 20 Feb 2013 13:36:37 -0500
parents 075fe5424c32
children 8a0771c5e236
line wrap: on
line diff
--- a/tools/ncbi_blast_plus/blastxml_to_top_descr.xml	Wed Feb 20 13:18:07 2013 -0500
+++ b/tools/ncbi_blast_plus/blastxml_to_top_descr.xml	Wed Feb 20 13:36:37 2013 -0500
@@ -1,7 +1,7 @@
-<tool id="blastxml_to_top_descr" name="BLAST top hit descriptions" version="0.0.1">
+<tool id="blastxml_to_top_descr" name="BLAST top hit descriptions" version="0.0.4">
     <description>Make a table from BLAST XML</description>
     <command interpreter="python">
-      blastxml_to_top_descr.py $blastxml_file $tabular_file $topN
+      blastxml_to_top_descr.py "${blastxml_file}" "${tabular_file}" ${topN}
     </command>
     <inputs>
         <param name="blastxml_file" type="data" format="blastxml" label="BLAST results as XML"/>