Mercurial > repos > peterjc > effectivet3

annotate tools/effectiveT3/tool_dependencies.xml @ 10:a46d7861c32c draft

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"Update all the pico_galaxy tools on main Tool Shed"
author peterjc
date Fri, 16 Apr 2021 22:34:56 +0000
parents 60a9b3f760cc
children
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="effectiveT3" version="1.0.1">
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4 <install version="1.0">
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5 <actions>
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6 <!-- Main JAR file -->
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7 <!-- Original URL http://effectors.csb.univie.ac.at/sites/eff/files/others/TTSS_GUI-1.0.1.jar -->
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8 <action type="download_file" sha256sum="5a811a86a14dffbc5ae91dc45f40791642b8866266ffd2337b97d4c298129cab" target_filename="TTSS_GUI-1.0.1.jar">https://depot.galaxyproject.org/software/TTSS_GUI/TTSS_GUI_1.0.1_src_all.jar</action>
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9 <action type="move_file"><source>TTSS_GUI-1.0.1.jar</source><destination>$INSTALL_DIR</destination></action>
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10 <!-- Model specific JAR files -->
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11 <action type="make_directory">$INSTALL_DIR/module</action>
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12 <!-- Original URL http://effectors.csb.univie.ac.at/sites/eff/files/others/TTSS_ANIMAL-1.0.1.jar -->
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13 <action type="download_file" sha256sum="3d9cd8e805387d2dfa855076b3d5f7f97334aa612288075111329fb036c94e34" target_filename="TTSS_ANIMAL-1.0.1.jar">https://depot.galaxyproject.org/software/TTSS_ANIMAL/TTSS_ANIMAL_1.0.1_src_all.jar</action>
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a46d7861c32c "Update all the pico_galaxy tools on main Tool Shed"
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14 <action type="move_file"><source>TTSS_ANIMAL-1.0.1.jar</source><destination>$INSTALL_DIR/module/</destination></action>
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15 <!-- Original URL http://effectors.csb.univie.ac.at/sites/eff/files/others/TTSS_PLANT-1.0.1.jar -->
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16 <action type="download_file" sha256sum="593f0052ace030c2fa16cf336f3916a21bc2addbaefdfa149b084b1425e42a13" target_filename="TTSS_PLANT-1.0.1.jar">https://depot.galaxyproject.org/software/TTSS_PLANT/TTSS_PLANT_1.0.1_src_all.jar</action>
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17 <action type="move_file"><source>TTSS_PLANT-1.0.1.jar</source><destination>$INSTALL_DIR/module/</destination></action>
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18 <!-- Original URL http://effectors.csb.univie.ac.at/sites/eff/files/others/TTSS_STD-1.0.1.jar -->
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19 <action type="download_file" sha256sum="865809e5ead6d8bb038e854ccaebc7c102b72738ff3557553af9b9ac8e529336" target_filename="TTSS_STD-1.0.1.jar">https://depot.galaxyproject.org/software/TTSS_STD/TTSS_STD_1.0.1_src_all.jar</action>
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20 <action type="move_file"><source>TTSS_STD-1.0.1.jar</source><destination>$INSTALL_DIR/module/</destination></action>
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21 <!-- Original URL http://effectors.csb.univie.ac.at/sites/eff/files/others/TTSS_STD-2.0.2.jar -->
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22 <action type="download_file" sha256sum="860c6e3680fa1f3c6ac2362605205af4cdd9a1caefee59fdbd37d1453c9bad44" target_filename="TTSS_STD-2.0.2.jar">https://depot.galaxyproject.org/software/TTSS_STD/TTSS_STD_2.0.2_src_all.jar</action>
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23 <action type="move_file"><source>TTSS_STD-2.0.2.jar</source><destination>$INSTALL_DIR/module/</destination></action>
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24 <!-- Make this accessible -->
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25 <action type="set_environment">
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26 <environment_variable name="EFFECTIVET3" action="set_to">$INSTALL_DIR</environment_variable>
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27 </action>
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28 </actions>
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29 </install>
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30 <readme>
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31 Downloads effectiveT3 v1.0.1 and associated models from http://effectors.org/ aka http://effectors.csb.univie.ac.at/
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33 Sets environment variable $EFFECTIVET3 to the directory containing the main JAR file whose subdirectory module/ holds the model JAR files.
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34 </readme>
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35 </package>
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36 </tool_dependency>
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